Strain Fitness in Variovorax sp. SCN45 around GFF5444

Experiment: M9 with calcium pantothenate 10 mg/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9 with calcium pantothenate 10 mg/mL
69,919	+		GFF5443	0.71	-0.2
69,919	+		GFF5443	0.71	+0.4
69,919	+		GFF5443	0.71	+0.4
69,919	+		GFF5443	0.71	-4.3
69,919	+		GFF5443	0.71	-0.1
69,919	+		GFF5443	0.71	+0.3
69,920	-		GFF5443	0.71	-2.2
69,920	-		GFF5443	0.71	-0.7
69,920	-		GFF5443	0.71	-0.9
69,920	-		GFF5443	0.71	-0.8
69,920	-		GFF5443	0.71	-1.3
69,928	+		GFF5443	0.71	-0.3
70,063	+		GFF5443	0.76	-1.8
70,063	+		GFF5443	0.76	-0.1
70,064	-		GFF5443	0.76	+0.9
70,064	-		GFF5443	0.76	-1.1
70,064	-		GFF5443	0.76	-0.3
70,064	-		GFF5443	0.76	+1.2
70,177	+		GFF5443	0.80	+0.9
70,177	+		GFF5443	0.80	-2.9
70,177	+		GFF5443	0.80	+2.3
70,177	+		GFF5443	0.80	-1.3
70,177	+		GFF5443	0.80	-0.1
70,177	+		GFF5443	0.80	-1.1
70,177	+		GFF5443	0.80	-0.1
70,177	+		GFF5443	0.80	-1.1
70,177	+		GFF5443	0.80	-0.9
70,177	+		GFF5443	0.80	+0.1
70,177	+		GFF5443	0.80	-0.1
70,177	+		GFF5443	0.80	+2.3
70,177	+		GFF5443	0.80	-0.8
70,177	+		GFF5443	0.80	+0.3
70,177	+		GFF5443	0.80	-0.0
70,177	+		GFF5443	0.80	-0.2
70,177	+		GFF5443	0.80	-0.9
70,177	+		GFF5443	0.80	-0.9
70,177	+		GFF5443	0.80	-0.9
70,177	+		GFF5443	0.80	-1.0
70,177	+		GFF5443	0.80	+0.4
70,178	-		GFF5443	0.80	-0.0
70,178	-		GFF5443	0.80	-0.6
70,178	-		GFF5443	0.80	-1.5
70,178	-		GFF5443	0.80	-0.5
70,178	-		GFF5443	0.80	+0.1
70,178	-		GFF5443	0.80	-0.4
70,178	-		GFF5443	0.80	-0.1
70,178	-		GFF5443	0.80	-0.1
70,178	-		GFF5443	0.80	-1.4
70,178	-		GFF5443	0.80	-1.4
70,204	+		GFF5443	0.81	+0.3
70,204	+		GFF5443	0.81	-0.7
70,204	+		GFF5443	0.81	+0.4
70,204	+		GFF5443	0.81	-0.1
70,204	+		GFF5443	0.81	-1.3
70,205	-		GFF5443	0.81	+0.4
70,205	-		GFF5443	0.81	+1.1
70,205	-		GFF5443	0.81	-0.3
70,205	-		GFF5443	0.81	-0.6
70,267	+		GFF5443	0.83	+0.8
70,267	+		GFF5443	0.83	+0.1
70,267	+		GFF5443	0.83	-0.1
70,268	-		GFF5443	0.83	-1.0
70,268	-		GFF5443	0.83	-2.9
70,268	-		GFF5443	0.83	+0.6
70,273	+		GFF5443	0.84	-0.7
70,273	+		GFF5443	0.84	-1.0
70,273	+		GFF5443	0.84	-1.4
70,273	+		GFF5443	0.84	-1.8
70,273	+		GFF5443	0.84	-1.2
70,273	+		GFF5443	0.84	+0.6
70,273	+		GFF5443	0.84	+0.3
70,273	+		GFF5443	0.84	+0.3
70,273	+		GFF5443	0.84	-2.2
70,273	+		GFF5443	0.84	-0.8
70,274	-		GFF5443	0.84	-0.4
70,274	-		GFF5443	0.84	-0.6
70,274	-		GFF5443	0.84	-0.9
70,274	-		GFF5443	0.84	-0.3
70,274	-		GFF5443	0.84	-0.7
70,274	-		GFF5443	0.84	-0.9
70,274	-		GFF5443	0.84	-1.7
70,274	-		GFF5443	0.84	-1.0
70,274	-		GFF5443	0.84	-0.4
70,274	-		GFF5443	0.84	-0.6
70,274	-		GFF5443	0.84	-0.1
70,274	-		GFF5443	0.84	+0.3
70,274	-		GFF5443	0.84	+0.2
70,274	-		GFF5443	0.84	+0.2
70,274	-		GFF5443	0.84	-0.7
70,274	-		GFF5443	0.84	-0.4
70,274	-		GFF5443	0.84	+1.2
70,500	+				-0.3
70,500	+				-1.0
70,500	+				+1.1
70,500	+				-1.5
70,500	+				+0.3
70,500	+				-0.3
70,501	-				-0.8
70,501	-				+0.3
70,501	-				-0.3
70,501	-				-0.1
70,501	-				+0.6
70,501	-				-0.1
70,501	-				-1.3
70,579	+				-0.1
70,579	+				+0.0
70,579	+				-0.6
70,579	+				-1.0
70,579	+				-0.9
70,579	+				+0.9
70,580	-				+1.2
70,580	-				+0.7
70,580	-				+0.9
70,580	-				-0.2
70,580	-				-0.4
70,580	-				+0.9
70,580	-				-1.1
70,580	-				-0.4
70,580	-				-1.3
70,642	+				-0.7
70,642	+				+1.6
70,642	+				-0.2
70,642	+				-0.2
70,642	+				-1.0
70,643	-				-0.2
70,643	-				-0.9
70,643	-				+0.8
70,643	-				-0.3
70,643	-				+0.3
70,643	-				+1.2
70,675	+				-2.7
70,675	+				+0.3
70,675	+				-0.5
70,676	-				+0.1
70,676	-				+0.0
70,676	-				-0.5
70,676	-				+1.0
70,766	+				-1.1
70,766	+				-0.7
70,766	+				+0.1
70,766	+				-0.4
70,766	+				-1.4
70,767	-				+0.6
70,767	-				-1.4
70,767	-				-0.3
70,767	-				-0.5
70,767	-				+0.1
70,767	-				-0.9
70,767	-				+0.3
70,767	-				-0.0
70,809	+				-1.0
70,809	+				-0.3
70,809	+				-0.8
70,810	-				-1.7
70,810	-				-1.1
70,810	-				+0.4
70,810	-				-0.1
70,910	+				-0.1
70,910	+				-0.3
70,910	+				-0.1
70,910	+				+1.0
70,911	-				-1.1
70,968	+				-1.6
70,968	+				-1.1
70,968	+				+0.9
70,968	+				+0.7
70,969	-				+0.0
71,155	+				-0.7
71,155	+				-0.3
71,155	+				-1.5
71,155	+				-0.8
71,155	+				+1.9
71,155	+				+1.5
71,155	+				+0.1
71,155	+				-0.3
71,155	+				-0.5
71,156	-				-0.3
71,156	-				+1.3
71,156	-				-1.0
71,156	-				+1.1
71,156	-				-0.9
71,156	-				-2.1
71,156	-				+0.6
71,156	-				-0.1
71,156	-				-1.9
71,156	-				-0.7
71,515	+		GFF5444	0.17	-0.6
71,515	+		GFF5444	0.17	-0.8
71,515	+		GFF5444	0.17	+0.2
71,516	-		GFF5444	0.17	-0.5
71,516	-		GFF5444	0.17	+0.2
71,530	+		GFF5444	0.17	+0.7
71,530	+		GFF5444	0.17	-0.4
71,530	+		GFF5444	0.17	-1.0
71,530	+		GFF5444	0.17	-2.3
71,530	+		GFF5444	0.17	-0.6
71,530	+		GFF5444	0.17	-2.0
71,530	+		GFF5444	0.17	-0.0
71,531	-		GFF5444	0.18	+1.7
71,531	-		GFF5444	0.18	-0.4
71,531	-		GFF5444	0.18	+0.1
71,557	+		GFF5444	0.18	-0.0
71,557	+		GFF5444	0.18	+0.3
71,557	+		GFF5444	0.18	-0.1
71,557	+		GFF5444	0.18	-0.5
71,557	+		GFF5444	0.18	-0.2
71,557	+		GFF5444	0.18	-0.5
71,557	+		GFF5444	0.18	+0.5
71,557	+		GFF5444	0.18	-0.4
71,557	+		GFF5444	0.18	-0.2
71,557	+		GFF5444	0.18	-1.7
71,558	-		GFF5444	0.18	-1.9
71,558	-		GFF5444	0.18	-0.4
71,558	-		GFF5444	0.18	-0.6
71,558	-		GFF5444	0.18	+0.9
71,558	-		GFF5444	0.18	+0.3
71,558	-		GFF5444	0.18	-1.5
71,558	-		GFF5444	0.18	-0.2
71,558	-		GFF5444	0.18	-0.9
71,558	-		GFF5444	0.18	+0.1
71,558	-		GFF5444	0.18	+0.2
71,962	+		GFF5444	0.28	+0.1
71,962	+		GFF5444	0.28	-0.6
71,962	+		GFF5444	0.28	-0.5
71,962	+		GFF5444	0.28	-0.3
71,963	-		GFF5444	0.28	-0.2
71,963	-		GFF5444	0.28	-0.6
71,963	-		GFF5444	0.28	-1.3
71,963	-		GFF5444	0.28	-0.1
72,031	+		GFF5444	0.29	-0.1
72,464	-		GFF5444	0.40	-2.0
72,527	-		GFF5444	0.41	-1.3
72,527	-		GFF5444	0.41	+0.2
72,527	-		GFF5444	0.41	-0.9
72,562	+		GFF5444	0.42	-1.3
72,563	-		GFF5444	0.42	+0.2
72,697	+		GFF5444	0.45	-0.1
72,697	+		GFF5444	0.45	-0.7
72,697	+		GFF5444	0.45	-1.7
72,697	+		GFF5444	0.45	-1.5
72,697	+		GFF5444	0.45	-0.5
72,697	+		GFF5444	0.45	-0.1
72,698	-		GFF5444	0.45	-1.8
72,698	-		GFF5444	0.45	+0.4
72,703	+		GFF5444	0.45	+1.1
72,703	+		GFF5444	0.45	+0.7
73,042	+		GFF5444	0.53	-0.4
73,042	+		GFF5444	0.53	-0.4
73,043	-		GFF5444	0.53	-1.1
73,043	-		GFF5444	0.53	-0.0
73,043	-		GFF5444	0.53	-0.7
73,043	-		GFF5444	0.53	+1.2
73,043	-		GFF5444	0.53	-0.7
73,043	-		GFF5444	0.53	+0.0
73,618	+		GFF5444	0.67	+0.0
73,618	+		GFF5444	0.67	+0.2
73,618	+		GFF5444	0.67	+0.1
73,618	+		GFF5444	0.67	+0.7
73,618	+		GFF5444	0.67	-1.0
73,618	+		GFF5444	0.67	+0.5
73,618	+		GFF5444	0.67	-1.8
73,618	+		GFF5444	0.67	+0.4
73,618	+		GFF5444	0.67	-2.1
73,618	+		GFF5444	0.67	-0.7
73,618	+		GFF5444	0.67	+0.6
73,619	-		GFF5444	0.67	-0.0
73,619	-		GFF5444	0.67	-1.8
73,619	-		GFF5444	0.67	-1.1
73,619	-		GFF5444	0.67	-1.0
73,619	-		GFF5444	0.67	-0.2
73,619	-		GFF5444	0.67	-1.3
73,619	-		GFF5444	0.67	-1.4
73,619	-		GFF5444	0.67	-0.3
73,619	-		GFF5444	0.67	+1.1
73,619	-		GFF5444	0.67	-0.9
73,843	+		GFF5444	0.72	-1.2
73,843	+		GFF5444	0.72	-0.4
73,843	+		GFF5444	0.72	-0.5
73,843	+		GFF5444	0.72	+0.5
73,844	-		GFF5444	0.72	-0.5
73,978	+		GFF5444	0.76	-0.4
73,978	+		GFF5444	0.76	+0.3
73,979	-		GFF5444	0.76	-0.9
73,987	+		GFF5444	0.76	-1.1
73,987	+		GFF5444	0.76	-0.1
73,987	+		GFF5444	0.76	-0.6
73,987	+		GFF5444	0.76	-0.1
74,014	+		GFF5444	0.76	+0.3
74,014	+		GFF5444	0.76	+0.1
74,898	-				-0.7
75,126	+		GFF5445	0.15	-0.7
75,126	+		GFF5445	0.15	+0.3
75,126	+		GFF5445	0.15	-0.7
75,126	+		GFF5445	0.15	+0.3
75,127	-		GFF5445	0.15	-0.4
75,127	-		GFF5445	0.15	+0.9
75,336	+		GFF5445	0.40	+0.9
75,381	+		GFF5445	0.46	-0.5
75,382	-		GFF5445	0.46	-0.1
75,382	-		GFF5445	0.46	-0.2
75,480	+		GFF5445	0.58	-0.1
75,480	+		GFF5445	0.58	+1.3
75,480	+		GFF5445	0.58	-0.1
75,480	+		GFF5445	0.58	+1.9
75,480	+		GFF5445	0.58	+0.1
75,481	-		GFF5445	0.58	-1.3
75,481	-		GFF5445	0.58	-1.7
75,481	-		GFF5445	0.58	+1.9
75,481	-		GFF5445	0.58	+0.9
75,481	-		GFF5445	0.58	+0.3
75,504	+		GFF5445	0.61	-0.2
75,566	+		GFF5445	0.69	-1.5
75,567	-		GFF5445	0.69	-0.1
75,819	+				+0.5
75,820	-				-0.1
75,820	-				-0.5
75,820	-				-0.5
75,820	-				-0.7