Strain Fitness in Variovorax sp. SCN45 around GFF512

Experiment: M9 with calcium pantothenate 10 mg/mL

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGFF509 and GFF510 overlap by 4 nucleotidesGFF510 and GFF511 overlap by 4 nucleotidesGFF511 and GFF512 overlap by 4 nucleotidesGFF512 and GFF513 are separated by 44 nucleotides GFF509 - ABC transporter, permease protein 1 (cluster 4, leucine/isoleucine/valine/benzoate), at 550,666 to 551,646 GFF509 GFF510 - ABC transporter, ATP-binding protein 2 (cluster 4, leucine/isoleucine/valine/benzoate), at 551,643 to 552,371 GFF510 GFF511 - no description, at 552,368 to 552,514 GFF511 GFF512 - ABC transporter, ATP-binding protein 1 (cluster 4, leucine/isoleucine/valine/benzoate), at 552,511 to 553,278 GFF512 GFF513 - Chitinase (EC 3.2.1.14), at 553,323 to 554,780 GFF513 Position (kb) 552 553 554Strain fitness (log2 ratio) -2 -1 0 1 2at 551.647 kb on - strandat 551.647 kb on - strandat 551.647 kb on - strandat 552.118 kb on + strand, within GFF510at 552.118 kb on + strand, within GFF510at 552.118 kb on + strand, within GFF510at 552.118 kb on + strand, within GFF510at 552.119 kb on - strand, within GFF510at 552.119 kb on - strand, within GFF510at 552.119 kb on - strand, within GFF510at 552.119 kb on - strand, within GFF510at 552.316 kb on + strandat 552.317 kb on - strandat 552.375 kb on + strandat 552.375 kb on + strandat 552.376 kb on - strandat 552.542 kb on + strandat 552.542 kb on + strandat 552.542 kb on + strandat 552.543 kb on - strandat 552.543 kb on - strandat 553.151 kb on + strand, within GFF512at 553.151 kb on + strand, within GFF512at 553.151 kb on + strand, within GFF512at 553.151 kb on + strand, within GFF512at 553.152 kb on - strand, within GFF512at 553.152 kb on - strand, within GFF512at 553.152 kb on - strand, within GFF512at 553.152 kb on - strand, within GFF512at 553.152 kb on - strand, within GFF512at 553.152 kb on - strand, within GFF512at 553.342 kb on + strandat 553.342 kb on + strandat 553.342 kb on + strandat 553.342 kb on + strandat 553.343 kb on - strandat 553.343 kb on - strandat 553.343 kb on - strandat 553.345 kb on + strandat 553.345 kb on + strandat 553.345 kb on + strandat 553.345 kb on + strandat 553.346 kb on - strandat 553.346 kb on - strandat 553.346 kb on - strandat 553.346 kb on - strandat 553.346 kb on - strandat 553.346 kb on - strandat 553.346 kb on - strandat 553.346 kb on - strandat 553.381 kb on + strandat 553.381 kb on + strandat 553.381 kb on + strandat 553.381 kb on + strandat 553.417 kb on + strandat 553.417 kb on + strandat 553.418 kb on - strandat 553.423 kb on + strandat 553.423 kb on + strandat 553.423 kb on + strandat 553.423 kb on + strandat 553.424 kb on - strandat 553.424 kb on - strandat 553.424 kb on - strandat 553.424 kb on - strandat 553.435 kb on + strandat 553.435 kb on + strandat 553.435 kb on + strandat 553.436 kb on - strandat 553.445 kb on - strandat 553.445 kb on - strandat 553.445 kb on - strandat 553.463 kb on + strandat 553.463 kb on + strandat 553.463 kb on + strandat 553.464 kb on - strandat 553.464 kb on - strandat 553.464 kb on - strandat 553.464 kb on - strandat 553.464 kb on - strandat 553.471 kb on + strand, within GFF513at 553.471 kb on + strand, within GFF513at 553.472 kb on - strand, within GFF513at 553.472 kb on - strand, within GFF513at 553.472 kb on - strand, within GFF513at 553.472 kb on - strand, within GFF513at 553.472 kb on - strand, within GFF513at 553.472 kb on - strand, within GFF513at 553.486 kb on + strand, within GFF513at 553.486 kb on + strand, within GFF513at 553.486 kb on + strand, within GFF513at 553.486 kb on + strand, within GFF513at 553.486 kb on + strand, within GFF513at 553.486 kb on + strand, within GFF513at 553.486 kb on + strand, within GFF513at 553.486 kb on + strand, within GFF513at 553.486 kb on + strand, within GFF513at 553.487 kb on - strand, within GFF513at 553.487 kb on - strand, within GFF513at 553.487 kb on - strand, within GFF513at 553.487 kb on - strand, within GFF513at 553.487 kb on - strand, within GFF513at 553.487 kb on - strand, within GFF513at 553.487 kb on - strand, within GFF513at 553.487 kb on - strand, within GFF513at 553.594 kb on + strand, within GFF513at 553.595 kb on - strand, within GFF513at 553.595 kb on - strand, within GFF513at 553.595 kb on - strand, within GFF513at 553.595 kb on - strand, within GFF513at 553.595 kb on - strand, within GFF513at 553.595 kb on - strand, within GFF513at 553.627 kb on + strand, within GFF513at 553.628 kb on - strand, within GFF513at 553.685 kb on - strand, within GFF513at 553.685 kb on - strand, within GFF513at 553.855 kb on + strand, within GFF513at 553.856 kb on - strand, within GFF513at 553.856 kb on - strand, within GFF513at 553.922 kb on - strand, within GFF513at 553.922 kb on - strand, within GFF513at 553.960 kb on + strand, within GFF513at 553.961 kb on - strand, within GFF513at 553.978 kb on + strand, within GFF513at 553.978 kb on + strand, within GFF513at 553.979 kb on - strand, within GFF513at 553.979 kb on - strand, within GFF513at 553.999 kb on + strand, within GFF513at 553.999 kb on + strand, within GFF513at 554.000 kb on - strand, within GFF513at 554.000 kb on - strand, within GFF513at 554.068 kb on + strand, within GFF513at 554.068 kb on + strand, within GFF513at 554.069 kb on - strand, within GFF513at 554.176 kb on + strand, within GFF513at 554.176 kb on + strand, within GFF513at 554.176 kb on + strand, within GFF513at 554.177 kb on - strand, within GFF513at 554.177 kb on - strand, within GFF513at 554.177 kb on - strand, within GFF513at 554.177 kb on - strand, within GFF513at 554.227 kb on + strand, within GFF513at 554.227 kb on + strand, within GFF513at 554.228 kb on - strand, within GFF513at 554.228 kb on - strand, within GFF513

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL
remove
551,647 - -1.5
551,647 - -0.1
551,647 - -0.5
552,118 + GFF510 0.65 -0.5
552,118 + GFF510 0.65 -0.3
552,118 + GFF510 0.65 -1.1
552,118 + GFF510 0.65 +0.2
552,119 - GFF510 0.65 -0.1
552,119 - GFF510 0.65 -1.6
552,119 - GFF510 0.65 -1.3
552,119 - GFF510 0.65 -0.2
552,316 + -0.6
552,317 - +0.5
552,375 + +1.1
552,375 + -0.1
552,376 - +0.7
552,542 + -0.7
552,542 + +1.0
552,542 + -0.6
552,543 - -0.3
552,543 - -0.2
553,151 + GFF512 0.83 -0.5
553,151 + GFF512 0.83 -0.5
553,151 + GFF512 0.83 -0.4
553,151 + GFF512 0.83 +1.2
553,152 - GFF512 0.83 -0.2
553,152 - GFF512 0.83 -0.7
553,152 - GFF512 0.83 -2.1
553,152 - GFF512 0.83 -1.3
553,152 - GFF512 0.83 -0.3
553,152 - GFF512 0.83 +0.2
553,342 + +0.1
553,342 + -0.2
553,342 + -0.2
553,342 + -0.1
553,343 - -0.3
553,343 - +0.0
553,343 - -0.6
553,345 + +1.0
553,345 + +0.1
553,345 + -0.3
553,345 + +0.0
553,346 - -1.9
553,346 - -0.1
553,346 - -0.3
553,346 - -0.6
553,346 - -0.5
553,346 - -0.2
553,346 - -0.1
553,346 - -0.7
553,381 + -0.2
553,381 + -1.1
553,381 + +1.2
553,381 + -1.0
553,417 + +0.2
553,417 + -1.1
553,418 - +0.2
553,423 + -1.1
553,423 + +0.0
553,423 + +0.2
553,423 + -0.6
553,424 - -0.3
553,424 - -1.0
553,424 - -0.5
553,424 - +0.1
553,435 + +1.7
553,435 + -0.4
553,435 + +0.6
553,436 - -1.6
553,445 - -0.4
553,445 - -0.3
553,445 - -0.0
553,463 + -0.9
553,463 + +0.2
553,463 + -0.7
553,464 - -0.7
553,464 - -0.2
553,464 - +0.1
553,464 - +1.5
553,464 - -0.2
553,471 + GFF513 0.10 +0.1
553,471 + GFF513 0.10 -1.8
553,472 - GFF513 0.10 +0.5
553,472 - GFF513 0.10 +1.1
553,472 - GFF513 0.10 -0.4
553,472 - GFF513 0.10 -0.9
553,472 - GFF513 0.10 -0.1
553,472 - GFF513 0.10 -0.1
553,486 + GFF513 0.11 +0.3
553,486 + GFF513 0.11 +0.4
553,486 + GFF513 0.11 -0.6
553,486 + GFF513 0.11 +1.2
553,486 + GFF513 0.11 -0.5
553,486 + GFF513 0.11 -0.3
553,486 + GFF513 0.11 -1.3
553,486 + GFF513 0.11 +0.7
553,486 + GFF513 0.11 -1.1
553,487 - GFF513 0.11 -0.8
553,487 - GFF513 0.11 +0.8
553,487 - GFF513 0.11 -0.9
553,487 - GFF513 0.11 +0.4
553,487 - GFF513 0.11 +0.4
553,487 - GFF513 0.11 -0.9
553,487 - GFF513 0.11 -0.1
553,487 - GFF513 0.11 -1.0
553,594 + GFF513 0.19 -1.1
553,595 - GFF513 0.19 +1.8
553,595 - GFF513 0.19 -0.4
553,595 - GFF513 0.19 -2.5
553,595 - GFF513 0.19 -1.8
553,595 - GFF513 0.19 +0.5
553,595 - GFF513 0.19 -0.2
553,627 + GFF513 0.21 +0.4
553,628 - GFF513 0.21 -0.3
553,685 - GFF513 0.25 -0.2
553,685 - GFF513 0.25 -1.2
553,855 + GFF513 0.36 +0.4
553,856 - GFF513 0.37 -0.2
553,856 - GFF513 0.37 -1.1
553,922 - GFF513 0.41 -0.5
553,922 - GFF513 0.41 -0.9
553,960 + GFF513 0.44 -0.3
553,961 - GFF513 0.44 -0.1
553,978 + GFF513 0.45 -0.4
553,978 + GFF513 0.45 -1.4
553,979 - GFF513 0.45 +0.1
553,979 - GFF513 0.45 -0.1
553,999 + GFF513 0.46 -0.1
553,999 + GFF513 0.46 -2.7
554,000 - GFF513 0.46 -0.3
554,000 - GFF513 0.46 -0.2
554,068 + GFF513 0.51 +0.2
554,068 + GFF513 0.51 -0.6
554,069 - GFF513 0.51 -0.2
554,176 + GFF513 0.59 -0.3
554,176 + GFF513 0.59 -0.8
554,176 + GFF513 0.59 +0.1
554,177 - GFF513 0.59 -2.2
554,177 - GFF513 0.59 +0.0
554,177 - GFF513 0.59 -1.3
554,177 - GFF513 0.59 +0.2
554,227 + GFF513 0.62 -0.1
554,227 + GFF513 0.62 -0.6
554,228 - GFF513 0.62 -1.3
554,228 - GFF513 0.62 +0.4

Or see this region's nucleotide sequence