Strain Fitness in Variovorax sp. SCN45 around GFF5082

Experiment: M9 with calcium pantothenate 10 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF5081 and GFF5082 are separated by 30 nucleotidesGFF5082 and GFF5083 are separated by 192 nucleotides GFF5081 - Amidohydrolase family protein, at 184,138 to 185,349 GFF5081 GFF5082 - Uncharacterized MFS-type transporter, at 185,380 to 186,693 GFF5082 GFF5083 - Transcriptional regulator, LysR family, at 186,886 to 187,833 GFF5083 Position (kb) 185 186 187Strain fitness (log2 ratio) -1 0 1 2at 184.439 kb on + strand, within GFF5081at 184.836 kb on - strand, within GFF5081at 184.836 kb on - strand, within GFF5081at 184.836 kb on - strand, within GFF5081at 184.930 kb on + strand, within GFF5081at 184.931 kb on - strand, within GFF5081at 185.043 kb on - strand, within GFF5081at 185.172 kb on - strand, within GFF5081at 185.447 kb on + strandat 185.447 kb on + strandat 185.447 kb on + strandat 185.447 kb on + strandat 185.447 kb on + strandat 185.448 kb on - strandat 185.448 kb on - strandat 185.448 kb on - strandat 185.448 kb on - strandat 185.448 kb on - strandat 185.448 kb on - strandat 185.448 kb on - strandat 185.448 kb on - strandat 185.448 kb on - strandat 185.448 kb on - strandat 185.448 kb on - strandat 185.448 kb on - strandat 185.448 kb on - strandat 185.540 kb on + strand, within GFF5082at 185.540 kb on + strand, within GFF5082at 185.540 kb on + strand, within GFF5082at 185.540 kb on + strand, within GFF5082at 185.541 kb on - strand, within GFF5082at 185.541 kb on - strand, within GFF5082at 185.703 kb on - strand, within GFF5082at 185.703 kb on - strand, within GFF5082at 185.703 kb on - strand, within GFF5082at 185.870 kb on + strand, within GFF5082at 185.870 kb on + strand, within GFF5082at 185.870 kb on + strand, within GFF5082at 185.870 kb on + strand, within GFF5082at 185.870 kb on + strand, within GFF5082at 185.870 kb on + strand, within GFF5082at 185.870 kb on + strand, within GFF5082at 185.870 kb on + strand, within GFF5082at 185.870 kb on + strand, within GFF5082at 185.870 kb on + strand, within GFF5082at 185.870 kb on + strand, within GFF5082at 185.870 kb on + strand, within GFF5082at 185.870 kb on + strand, within GFF5082at 185.871 kb on - strand, within GFF5082at 185.871 kb on - strand, within GFF5082at 185.871 kb on - strand, within GFF5082at 185.871 kb on - strand, within GFF5082at 185.871 kb on - strand, within GFF5082at 185.871 kb on - strand, within GFF5082at 185.871 kb on - strand, within GFF5082at 185.871 kb on - strand, within GFF5082at 185.871 kb on - strand, within GFF5082at 185.871 kb on - strand, within GFF5082at 185.897 kb on + strand, within GFF5082at 185.898 kb on - strand, within GFF5082at 185.898 kb on - strand, within GFF5082at 185.898 kb on - strand, within GFF5082at 185.898 kb on - strand, within GFF5082at 185.898 kb on - strand, within GFF5082at 185.898 kb on - strand, within GFF5082at 186.028 kb on + strand, within GFF5082at 186.028 kb on + strand, within GFF5082at 186.028 kb on + strand, within GFF5082at 186.028 kb on + strand, within GFF5082at 186.028 kb on + strand, within GFF5082at 186.028 kb on + strand, within GFF5082at 186.028 kb on + strand, within GFF5082at 186.028 kb on + strand, within GFF5082at 186.029 kb on - strand, within GFF5082at 186.029 kb on - strand, within GFF5082at 186.029 kb on - strand, within GFF5082at 186.029 kb on - strand, within GFF5082at 186.029 kb on - strand, within GFF5082at 186.029 kb on - strand, within GFF5082at 186.029 kb on - strand, within GFF5082at 186.029 kb on - strand, within GFF5082at 186.029 kb on - strand, within GFF5082at 186.029 kb on - strand, within GFF5082at 186.029 kb on - strand, within GFF5082at 186.029 kb on - strand, within GFF5082at 186.029 kb on - strand, within GFF5082at 186.029 kb on - strand, within GFF5082at 186.029 kb on - strand, within GFF5082at 186.032 kb on + strand, within GFF5082at 186.032 kb on + strand, within GFF5082at 186.032 kb on + strand, within GFF5082at 186.032 kb on + strand, within GFF5082at 186.032 kb on + strand, within GFF5082at 186.032 kb on + strand, within GFF5082at 186.032 kb on + strand, within GFF5082at 186.032 kb on + strand, within GFF5082at 186.032 kb on + strand, within GFF5082at 186.032 kb on + strand, within GFF5082at 186.032 kb on + strand, within GFF5082at 186.032 kb on + strand, within GFF5082at 186.032 kb on + strand, within GFF5082at 186.033 kb on - strand, within GFF5082at 186.033 kb on - strand, within GFF5082at 186.033 kb on - strand, within GFF5082at 186.033 kb on - strand, within GFF5082at 186.033 kb on - strand, within GFF5082at 186.033 kb on - strand, within GFF5082at 186.033 kb on - strand, within GFF5082at 186.120 kb on - strand, within GFF5082at 186.324 kb on - strand, within GFF5082at 186.324 kb on - strand, within GFF5082at 186.324 kb on - strand, within GFF5082at 186.324 kb on - strand, within GFF5082at 186.413 kb on + strand, within GFF5082at 186.413 kb on + strand, within GFF5082at 186.548 kb on + strand, within GFF5082at 186.548 kb on + strand, within GFF5082at 186.549 kb on - strand, within GFF5082at 186.549 kb on - strand, within GFF5082at 186.549 kb on - strand, within GFF5082at 186.563 kb on + strandat 186.563 kb on + strandat 186.563 kb on + strandat 186.563 kb on + strandat 186.563 kb on + strandat 186.563 kb on + strandat 186.563 kb on + strandat 186.563 kb on + strandat 186.563 kb on + strandat 186.564 kb on - strandat 186.564 kb on - strandat 186.564 kb on - strandat 186.564 kb on - strandat 186.564 kb on - strandat 186.564 kb on - strandat 186.564 kb on - strandat 186.695 kb on + strandat 186.695 kb on + strandat 186.695 kb on + strandat 186.695 kb on + strandat 186.695 kb on + strandat 186.695 kb on + strandat 186.695 kb on + strandat 186.695 kb on + strandat 186.695 kb on + strandat 186.695 kb on + strandat 186.696 kb on - strandat 186.696 kb on - strandat 186.696 kb on - strandat 186.696 kb on - strandat 186.696 kb on - strandat 186.696 kb on - strandat 186.696 kb on - strandat 186.696 kb on - strandat 186.751 kb on + strandat 186.751 kb on + strandat 186.751 kb on + strandat 186.751 kb on + strandat 186.752 kb on - strandat 186.752 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL
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184,439 + GFF5081 0.25 -0.7
184,836 - GFF5081 0.58 -0.1
184,836 - GFF5081 0.58 +0.4
184,836 - GFF5081 0.58 +0.2
184,930 + GFF5081 0.65 -0.7
184,931 - GFF5081 0.65 +1.2
185,043 - GFF5081 0.75 +0.8
185,172 - GFF5081 0.85 -0.1
185,447 + -1.5
185,447 + -1.6
185,447 + -1.0
185,447 + -0.5
185,447 + +0.2
185,448 - +0.1
185,448 - -0.6
185,448 - -1.3
185,448 - +0.9
185,448 - -1.4
185,448 - -0.5
185,448 - -0.4
185,448 - -0.8
185,448 - +0.3
185,448 - -0.1
185,448 - -1.5
185,448 - -1.1
185,448 - +0.3
185,540 + GFF5082 0.12 -0.7
185,540 + GFF5082 0.12 +0.5
185,540 + GFF5082 0.12 -0.1
185,540 + GFF5082 0.12 +0.5
185,541 - GFF5082 0.12 +1.0
185,541 - GFF5082 0.12 -1.1
185,703 - GFF5082 0.25 -0.4
185,703 - GFF5082 0.25 -0.3
185,703 - GFF5082 0.25 -0.7
185,870 + GFF5082 0.37 -0.1
185,870 + GFF5082 0.37 +0.1
185,870 + GFF5082 0.37 -0.3
185,870 + GFF5082 0.37 -0.1
185,870 + GFF5082 0.37 -0.9
185,870 + GFF5082 0.37 -1.5
185,870 + GFF5082 0.37 +1.2
185,870 + GFF5082 0.37 +0.3
185,870 + GFF5082 0.37 -0.1
185,870 + GFF5082 0.37 +2.4
185,870 + GFF5082 0.37 +0.0
185,870 + GFF5082 0.37 -1.3
185,870 + GFF5082 0.37 +0.2
185,871 - GFF5082 0.37 +0.9
185,871 - GFF5082 0.37 -0.5
185,871 - GFF5082 0.37 -0.6
185,871 - GFF5082 0.37 -0.1
185,871 - GFF5082 0.37 -0.7
185,871 - GFF5082 0.37 -0.4
185,871 - GFF5082 0.37 +0.6
185,871 - GFF5082 0.37 -0.7
185,871 - GFF5082 0.37 +0.2
185,871 - GFF5082 0.37 -0.5
185,897 + GFF5082 0.39 -0.6
185,898 - GFF5082 0.39 +1.0
185,898 - GFF5082 0.39 -0.6
185,898 - GFF5082 0.39 +0.0
185,898 - GFF5082 0.39 +0.7
185,898 - GFF5082 0.39 -0.1
185,898 - GFF5082 0.39 -1.1
186,028 + GFF5082 0.49 +0.5
186,028 + GFF5082 0.49 -1.5
186,028 + GFF5082 0.49 +0.1
186,028 + GFF5082 0.49 -0.7
186,028 + GFF5082 0.49 +0.9
186,028 + GFF5082 0.49 +0.9
186,028 + GFF5082 0.49 +1.4
186,028 + GFF5082 0.49 -0.8
186,029 - GFF5082 0.49 -0.1
186,029 - GFF5082 0.49 +1.9
186,029 - GFF5082 0.49 +0.9
186,029 - GFF5082 0.49 +0.7
186,029 - GFF5082 0.49 +0.4
186,029 - GFF5082 0.49 +0.7
186,029 - GFF5082 0.49 +0.0
186,029 - GFF5082 0.49 -0.4
186,029 - GFF5082 0.49 +0.3
186,029 - GFF5082 0.49 -1.7
186,029 - GFF5082 0.49 -1.1
186,029 - GFF5082 0.49 -0.6
186,029 - GFF5082 0.49 +0.0
186,029 - GFF5082 0.49 -0.2
186,029 - GFF5082 0.49 +1.0
186,032 + GFF5082 0.50 -0.1
186,032 + GFF5082 0.50 -0.3
186,032 + GFF5082 0.50 -0.8
186,032 + GFF5082 0.50 -0.3
186,032 + GFF5082 0.50 -1.3
186,032 + GFF5082 0.50 -0.1
186,032 + GFF5082 0.50 +0.3
186,032 + GFF5082 0.50 -0.3
186,032 + GFF5082 0.50 -0.3
186,032 + GFF5082 0.50 +0.3
186,032 + GFF5082 0.50 -0.1
186,032 + GFF5082 0.50 +0.1
186,032 + GFF5082 0.50 +0.2
186,033 - GFF5082 0.50 -0.4
186,033 - GFF5082 0.50 +0.2
186,033 - GFF5082 0.50 +0.9
186,033 - GFF5082 0.50 -0.9
186,033 - GFF5082 0.50 -1.5
186,033 - GFF5082 0.50 -1.4
186,033 - GFF5082 0.50 -0.1
186,120 - GFF5082 0.56 +0.5
186,324 - GFF5082 0.72 -0.6
186,324 - GFF5082 0.72 -0.2
186,324 - GFF5082 0.72 +0.9
186,324 - GFF5082 0.72 +0.1
186,413 + GFF5082 0.79 -0.2
186,413 + GFF5082 0.79 -0.7
186,548 + GFF5082 0.89 +0.6
186,548 + GFF5082 0.89 +0.6
186,549 - GFF5082 0.89 +0.1
186,549 - GFF5082 0.89 -1.1
186,549 - GFF5082 0.89 -0.5
186,563 + +0.1
186,563 + +1.4
186,563 + +0.4
186,563 + -0.0
186,563 + -0.8
186,563 + -0.6
186,563 + -0.3
186,563 + -0.5
186,563 + +0.6
186,564 - +0.0
186,564 - -0.9
186,564 - +1.1
186,564 - -0.2
186,564 - -0.4
186,564 - -0.9
186,564 - -1.1
186,695 + +0.3
186,695 + -0.7
186,695 + -0.6
186,695 + +0.0
186,695 + -0.9
186,695 + -1.0
186,695 + -0.6
186,695 + -0.4
186,695 + -0.8
186,695 + -1.0
186,696 - +1.7
186,696 - -0.2
186,696 - +0.2
186,696 - -0.1
186,696 - +0.1
186,696 - -0.9
186,696 - -1.7
186,696 - +0.6
186,751 + +1.1
186,751 + +1.3
186,751 + -0.5
186,751 + +0.5
186,752 - -0.9
186,752 - +1.3

Or see this region's nucleotide sequence