Strain Fitness in Variovorax sp. SCN45 around GFF5067

Experiment: M9 with calcium pantothenate 10 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF5065 and GFF5066 are separated by 12 nucleotidesGFF5066 and GFF5067 are separated by 24 nucleotidesGFF5067 and GFF5068 are separated by 98 nucleotides GFF5065 - Orotate phosphoribosyltransferase (EC 2.4.2.10), at 167,405 to 168,088 GFF5065 GFF5066 - Exodeoxyribonuclease III (EC 3.1.11.2), at 168,101 to 168,904 GFF5066 GFF5067 - Transcriptional regulator, LysR family, at 168,929 to 169,837 GFF5067 GFF5068 - 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases, at 169,936 to 171,174 GFF5068 Position (kb) 168 169 170Strain fitness (log2 ratio) -2 -1 0 1 2at 167.970 kb on + strand, within GFF5065at 168.080 kb on + strandat 168.080 kb on + strandat 168.080 kb on + strandat 168.080 kb on + strandat 168.080 kb on + strandat 168.080 kb on + strandat 168.080 kb on + strandat 168.080 kb on + strandat 168.080 kb on + strandat 168.080 kb on + strandat 168.080 kb on + strandat 168.080 kb on + strandat 168.080 kb on + strandat 168.080 kb on + strandat 168.080 kb on + strandat 168.080 kb on + strandat 168.080 kb on + strandat 168.081 kb on - strandat 168.081 kb on - strandat 168.081 kb on - strandat 168.081 kb on - strandat 168.081 kb on - strandat 168.081 kb on - strandat 168.081 kb on - strandat 168.081 kb on - strandat 168.081 kb on - strandat 168.081 kb on - strandat 168.081 kb on - strandat 168.081 kb on - strandat 168.148 kb on + strandat 168.149 kb on - strandat 168.193 kb on + strand, within GFF5066at 168.193 kb on + strand, within GFF5066at 168.193 kb on + strand, within GFF5066at 168.193 kb on + strand, within GFF5066at 168.193 kb on + strand, within GFF5066at 168.193 kb on + strand, within GFF5066at 168.193 kb on + strand, within GFF5066at 168.194 kb on - strand, within GFF5066at 168.194 kb on - strand, within GFF5066at 168.194 kb on - strand, within GFF5066at 168.194 kb on - strand, within GFF5066at 168.194 kb on - strand, within GFF5066at 168.194 kb on - strand, within GFF5066at 168.194 kb on - strand, within GFF5066at 168.194 kb on - strand, within GFF5066at 168.296 kb on + strand, within GFF5066at 168.297 kb on - strand, within GFF5066at 168.297 kb on - strand, within GFF5066at 168.297 kb on - strand, within GFF5066at 168.297 kb on - strand, within GFF5066at 168.314 kb on + strand, within GFF5066at 168.314 kb on + strand, within GFF5066at 168.314 kb on + strand, within GFF5066at 168.314 kb on + strand, within GFF5066at 168.315 kb on - strand, within GFF5066at 168.315 kb on - strand, within GFF5066at 168.383 kb on + strand, within GFF5066at 168.437 kb on + strand, within GFF5066at 168.437 kb on + strand, within GFF5066at 168.437 kb on + strand, within GFF5066at 168.438 kb on - strand, within GFF5066at 168.695 kb on + strand, within GFF5066at 168.695 kb on + strand, within GFF5066at 168.696 kb on - strand, within GFF5066at 168.731 kb on + strand, within GFF5066at 168.731 kb on + strand, within GFF5066at 168.731 kb on + strand, within GFF5066at 168.731 kb on + strand, within GFF5066at 168.731 kb on + strand, within GFF5066at 168.731 kb on + strand, within GFF5066at 168.732 kb on - strand, within GFF5066at 168.732 kb on - strand, within GFF5066at 168.732 kb on - strand, within GFF5066at 168.732 kb on - strand, within GFF5066at 168.732 kb on - strand, within GFF5066at 168.732 kb on - strand, within GFF5066at 168.732 kb on - strand, within GFF5066at 168.732 kb on - strand, within GFF5066at 168.732 kb on - strand, within GFF5066at 168.732 kb on - strand, within GFF5066at 168.732 kb on - strand, within GFF5066at 168.732 kb on - strand, within GFF5066at 168.732 kb on - strand, within GFF5066at 168.732 kb on - strand, within GFF5066at 168.762 kb on - strand, within GFF5066at 168.762 kb on - strand, within GFF5066at 168.762 kb on - strand, within GFF5066at 168.791 kb on + strand, within GFF5066at 168.791 kb on + strand, within GFF5066at 168.791 kb on + strand, within GFF5066at 168.791 kb on + strand, within GFF5066at 168.791 kb on + strand, within GFF5066at 168.791 kb on + strand, within GFF5066at 168.792 kb on - strand, within GFF5066at 168.792 kb on - strand, within GFF5066at 168.792 kb on - strand, within GFF5066at 168.842 kb on + strandat 168.842 kb on + strandat 168.842 kb on + strandat 168.843 kb on - strandat 168.887 kb on + strandat 168.888 kb on - strandat 168.888 kb on - strandat 168.902 kb on + strandat 168.902 kb on + strandat 168.902 kb on + strandat 168.902 kb on + strandat 168.902 kb on + strandat 168.902 kb on + strandat 168.902 kb on + strandat 168.902 kb on + strandat 168.903 kb on - strandat 168.903 kb on - strandat 168.903 kb on - strandat 168.903 kb on - strandat 168.903 kb on - strandat 168.903 kb on - strandat 168.903 kb on - strandat 168.908 kb on + strandat 169.714 kb on - strand, within GFF5067at 169.714 kb on - strand, within GFF5067at 169.897 kb on + strandat 169.898 kb on - strandat 169.898 kb on - strandat 169.898 kb on - strandat 170.026 kb on + strandat 170.027 kb on - strandat 170.027 kb on - strandat 170.216 kb on - strand, within GFF5068at 170.216 kb on - strand, within GFF5068at 170.266 kb on + strand, within GFF5068at 170.266 kb on + strand, within GFF5068at 170.266 kb on + strand, within GFF5068at 170.266 kb on + strand, within GFF5068at 170.267 kb on - strand, within GFF5068at 170.267 kb on - strand, within GFF5068at 170.441 kb on - strand, within GFF5068at 170.511 kb on + strand, within GFF5068at 170.569 kb on + strand, within GFF5068at 170.570 kb on - strand, within GFF5068at 170.767 kb on + strand, within GFF5068

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL
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167,970 + GFF5065 0.83 -1.8
168,080 + +0.4
168,080 + -0.1
168,080 + +0.5
168,080 + -0.4
168,080 + -0.5
168,080 + +0.6
168,080 + -1.0
168,080 + -0.3
168,080 + +0.7
168,080 + +0.2
168,080 + +0.9
168,080 + +1.2
168,080 + +0.2
168,080 + -0.5
168,080 + +0.5
168,080 + -0.4
168,080 + -0.4
168,081 - -1.1
168,081 - +1.3
168,081 - +0.2
168,081 - -0.2
168,081 - -0.5
168,081 - -0.1
168,081 - -2.2
168,081 - -0.4
168,081 - +0.3
168,081 - +0.9
168,081 - +0.7
168,081 - -0.4
168,148 + -0.5
168,149 - -0.0
168,193 + GFF5066 0.11 -0.3
168,193 + GFF5066 0.11 +0.2
168,193 + GFF5066 0.11 -1.1
168,193 + GFF5066 0.11 -0.7
168,193 + GFF5066 0.11 +0.2
168,193 + GFF5066 0.11 -1.5
168,193 + GFF5066 0.11 -1.1
168,194 - GFF5066 0.12 +0.4
168,194 - GFF5066 0.12 +0.6
168,194 - GFF5066 0.12 -2.6
168,194 - GFF5066 0.12 -0.9
168,194 - GFF5066 0.12 -0.6
168,194 - GFF5066 0.12 -2.0
168,194 - GFF5066 0.12 -0.7
168,194 - GFF5066 0.12 -0.8
168,296 + GFF5066 0.24 +0.7
168,297 - GFF5066 0.24 -0.3
168,297 - GFF5066 0.24 -0.7
168,297 - GFF5066 0.24 -0.6
168,297 - GFF5066 0.24 +0.7
168,314 + GFF5066 0.26 +1.5
168,314 + GFF5066 0.26 +1.4
168,314 + GFF5066 0.26 +1.4
168,314 + GFF5066 0.26 -0.3
168,315 - GFF5066 0.27 +0.3
168,315 - GFF5066 0.27 -0.1
168,383 + GFF5066 0.35 +0.2
168,437 + GFF5066 0.42 -0.5
168,437 + GFF5066 0.42 +1.9
168,437 + GFF5066 0.42 +1.3
168,438 - GFF5066 0.42 +0.8
168,695 + GFF5066 0.74 -0.9
168,695 + GFF5066 0.74 -0.4
168,696 - GFF5066 0.74 -0.7
168,731 + GFF5066 0.78 -0.7
168,731 + GFF5066 0.78 -0.9
168,731 + GFF5066 0.78 -0.8
168,731 + GFF5066 0.78 +0.9
168,731 + GFF5066 0.78 +0.5
168,731 + GFF5066 0.78 -1.4
168,732 - GFF5066 0.78 +0.6
168,732 - GFF5066 0.78 +0.4
168,732 - GFF5066 0.78 -0.6
168,732 - GFF5066 0.78 -0.1
168,732 - GFF5066 0.78 -0.5
168,732 - GFF5066 0.78 -0.1
168,732 - GFF5066 0.78 +2.1
168,732 - GFF5066 0.78 -1.1
168,732 - GFF5066 0.78 -0.8
168,732 - GFF5066 0.78 -0.0
168,732 - GFF5066 0.78 -1.0
168,732 - GFF5066 0.78 -0.3
168,732 - GFF5066 0.78 -0.6
168,732 - GFF5066 0.78 -1.0
168,762 - GFF5066 0.82 -0.2
168,762 - GFF5066 0.82 -0.2
168,762 - GFF5066 0.82 +0.5
168,791 + GFF5066 0.86 +0.2
168,791 + GFF5066 0.86 -0.5
168,791 + GFF5066 0.86 -1.9
168,791 + GFF5066 0.86 -0.1
168,791 + GFF5066 0.86 +0.4
168,791 + GFF5066 0.86 +1.3
168,792 - GFF5066 0.86 -0.8
168,792 - GFF5066 0.86 -0.7
168,792 - GFF5066 0.86 -0.4
168,842 + -0.9
168,842 + +0.1
168,842 + -0.2
168,843 - +0.2
168,887 + -0.0
168,888 - -0.6
168,888 - -1.1
168,902 + -0.7
168,902 + +0.7
168,902 + +0.2
168,902 + +0.1
168,902 + -0.6
168,902 + -0.1
168,902 + +0.6
168,902 + -0.4
168,903 - -0.2
168,903 - -0.5
168,903 - +0.0
168,903 - +0.1
168,903 - +0.3
168,903 - -0.2
168,903 - -0.6
168,908 + -0.1
169,714 - GFF5067 0.86 +0.0
169,714 - GFF5067 0.86 -1.7
169,897 + +0.1
169,898 - +0.0
169,898 - -0.0
169,898 - -1.6
170,026 + +0.1
170,027 - +0.6
170,027 - -0.8
170,216 - GFF5068 0.23 -0.1
170,216 - GFF5068 0.23 -0.5
170,266 + GFF5068 0.27 +0.9
170,266 + GFF5068 0.27 +0.5
170,266 + GFF5068 0.27 -0.7
170,266 + GFF5068 0.27 -0.1
170,267 - GFF5068 0.27 -0.9
170,267 - GFF5068 0.27 -0.8
170,441 - GFF5068 0.41 -0.6
170,511 + GFF5068 0.46 -0.8
170,569 + GFF5068 0.51 +0.3
170,570 - GFF5068 0.51 +0.8
170,767 + GFF5068 0.67 -0.0

Or see this region's nucleotide sequence