Strain Fitness in Variovorax sp. SCN45 around GFF4822

Experiment: M9 with calcium pantothenate 10 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF4820 and GFF4821 are separated by 158 nucleotidesGFF4821 and GFF4822 are separated by 94 nucleotidesGFF4822 and GFF4823 overlap by 41 nucleotidesGFF4823 and GFF4824 are separated by 121 nucleotides GFF4820 - BUG/TctC family periplasmic protein, at 191,668 to 192,660 GFF4820 GFF4821 - Transcriptional regulator, AcrR family, at 192,819 to 193,493 GFF4821 GFF4822 - Thiamine pyrophosphate-requiring enzymes, at 193,588 to 195,318 GFF4822 GFF4823 - hypothetical protein, at 195,278 to 195,577 GFF4823 GFF4824 - Transcriptional regulator, AraC family, at 195,699 to 196,424 GFF4824 Position (kb) 193 194 195 196Strain fitness (log2 ratio) -2 -1 0 1at 192.729 kb on - strandat 192.766 kb on - strandat 192.831 kb on + strandat 192.832 kb on + strandat 192.832 kb on + strandat 192.832 kb on + strandat 192.833 kb on - strandat 192.937 kb on + strand, within GFF4821at 192.937 kb on + strand, within GFF4821at 192.938 kb on - strand, within GFF4821at 192.943 kb on + strand, within GFF4821at 192.943 kb on + strand, within GFF4821at 192.943 kb on + strand, within GFF4821at 192.943 kb on + strand, within GFF4821at 192.944 kb on - strand, within GFF4821at 192.967 kb on + strand, within GFF4821at 192.967 kb on + strand, within GFF4821at 192.967 kb on + strand, within GFF4821at 192.968 kb on - strand, within GFF4821at 193.035 kb on + strand, within GFF4821at 193.150 kb on + strand, within GFF4821at 193.151 kb on - strand, within GFF4821at 193.151 kb on - strand, within GFF4821at 193.151 kb on - strand, within GFF4821at 193.151 kb on - strand, within GFF4821at 193.153 kb on + strand, within GFF4821at 193.153 kb on + strand, within GFF4821at 193.153 kb on + strand, within GFF4821at 193.154 kb on - strand, within GFF4821at 193.247 kb on - strand, within GFF4821at 193.247 kb on - strand, within GFF4821at 193.294 kb on + strand, within GFF4821at 193.297 kb on + strand, within GFF4821at 193.297 kb on + strand, within GFF4821at 193.298 kb on - strand, within GFF4821at 193.298 kb on - strand, within GFF4821at 193.298 kb on - strand, within GFF4821at 193.300 kb on + strand, within GFF4821at 193.300 kb on + strand, within GFF4821at 193.300 kb on + strand, within GFF4821at 193.300 kb on + strand, within GFF4821at 193.301 kb on - strand, within GFF4821at 193.301 kb on - strand, within GFF4821at 193.301 kb on - strand, within GFF4821at 193.301 kb on - strand, within GFF4821at 193.301 kb on - strand, within GFF4821at 193.301 kb on - strand, within GFF4821at 193.301 kb on - strand, within GFF4821at 193.301 kb on - strand, within GFF4821at 193.537 kb on - strandat 193.549 kb on + strandat 193.549 kb on + strandat 193.549 kb on + strandat 193.550 kb on - strandat 193.550 kb on - strandat 193.550 kb on - strandat 193.569 kb on - strandat 193.593 kb on + strandat 193.593 kb on + strandat 193.593 kb on + strandat 193.593 kb on + strandat 193.593 kb on + strandat 193.593 kb on + strandat 193.593 kb on + strandat 193.593 kb on + strandat 193.593 kb on + strandat 193.593 kb on + strandat 193.594 kb on - strandat 193.594 kb on - strandat 193.651 kb on - strandat 193.708 kb on + strandat 193.709 kb on - strandat 193.785 kb on + strand, within GFF4822at 193.968 kb on + strand, within GFF4822at 193.968 kb on + strand, within GFF4822at 193.969 kb on - strand, within GFF4822at 194.026 kb on + strand, within GFF4822at 194.026 kb on + strand, within GFF4822at 194.026 kb on + strand, within GFF4822at 194.026 kb on + strand, within GFF4822at 194.027 kb on - strand, within GFF4822at 194.027 kb on - strand, within GFF4822at 194.027 kb on - strand, within GFF4822at 194.178 kb on + strand, within GFF4822at 194.179 kb on - strand, within GFF4822at 194.179 kb on - strand, within GFF4822at 194.179 kb on - strand, within GFF4822at 194.348 kb on - strand, within GFF4822at 194.458 kb on + strand, within GFF4822at 194.537 kb on - strand, within GFF4822at 194.654 kb on - strand, within GFF4822at 194.815 kb on + strand, within GFF4822at 195.136 kb on + strand, within GFF4822at 195.136 kb on + strand, within GFF4822at 195.137 kb on - strand, within GFF4822at 195.142 kb on + strand, within GFF4822at 195.560 kb on + strandat 195.560 kb on + strandat 195.560 kb on + strandat 195.560 kb on + strandat 195.560 kb on + strandat 195.560 kb on + strandat 195.561 kb on - strandat 195.561 kb on - strandat 195.561 kb on - strandat 195.561 kb on - strandat 195.561 kb on - strandat 195.618 kb on + strandat 195.619 kb on - strandat 195.744 kb on + strandat 195.745 kb on - strandat 195.799 kb on + strand, within GFF4824at 195.799 kb on + strand, within GFF4824at 195.800 kb on - strand, within GFF4824at 195.800 kb on - strand, within GFF4824at 195.800 kb on - strand, within GFF4824

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL
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192,729 - -0.3
192,766 - -0.1
192,831 + -0.2
192,832 + +0.4
192,832 + -0.1
192,832 + -0.1
192,833 - -0.9
192,937 + GFF4821 0.17 -0.2
192,937 + GFF4821 0.17 -0.4
192,938 - GFF4821 0.18 -0.4
192,943 + GFF4821 0.18 -0.2
192,943 + GFF4821 0.18 +0.0
192,943 + GFF4821 0.18 -1.9
192,943 + GFF4821 0.18 -0.4
192,944 - GFF4821 0.19 +0.1
192,967 + GFF4821 0.22 -0.6
192,967 + GFF4821 0.22 -0.8
192,967 + GFF4821 0.22 -0.2
192,968 - GFF4821 0.22 +0.2
193,035 + GFF4821 0.32 +1.7
193,150 + GFF4821 0.49 +0.5
193,151 - GFF4821 0.49 -0.2
193,151 - GFF4821 0.49 -0.7
193,151 - GFF4821 0.49 -1.4
193,151 - GFF4821 0.49 +0.6
193,153 + GFF4821 0.49 +0.1
193,153 + GFF4821 0.49 -0.4
193,153 + GFF4821 0.49 +0.1
193,154 - GFF4821 0.50 +0.4
193,247 - GFF4821 0.63 -0.9
193,247 - GFF4821 0.63 -0.5
193,294 + GFF4821 0.70 -0.3
193,297 + GFF4821 0.71 -0.4
193,297 + GFF4821 0.71 -1.2
193,298 - GFF4821 0.71 -0.3
193,298 - GFF4821 0.71 +0.3
193,298 - GFF4821 0.71 -1.0
193,300 + GFF4821 0.71 -0.1
193,300 + GFF4821 0.71 -0.6
193,300 + GFF4821 0.71 +0.3
193,300 + GFF4821 0.71 -0.5
193,301 - GFF4821 0.71 -1.1
193,301 - GFF4821 0.71 -0.4
193,301 - GFF4821 0.71 -0.2
193,301 - GFF4821 0.71 -0.1
193,301 - GFF4821 0.71 +0.6
193,301 - GFF4821 0.71 -0.5
193,301 - GFF4821 0.71 -1.3
193,301 - GFF4821 0.71 +0.5
193,537 - -0.0
193,549 + +0.1
193,549 + +0.1
193,549 + -0.4
193,550 - -1.1
193,550 - -0.4
193,550 - -0.9
193,569 - -0.6
193,593 + +0.4
193,593 + -1.5
193,593 + -1.3
193,593 + -0.4
193,593 + +1.4
193,593 + +0.6
193,593 + +0.1
193,593 + +0.8
193,593 + +0.1
193,593 + -0.5
193,594 - +0.4
193,594 - +1.4
193,651 - +0.2
193,708 + -0.5
193,709 - -0.4
193,785 + GFF4822 0.11 +0.7
193,968 + GFF4822 0.22 -0.0
193,968 + GFF4822 0.22 +0.2
193,969 - GFF4822 0.22 +1.2
194,026 + GFF4822 0.25 -0.1
194,026 + GFF4822 0.25 -2.5
194,026 + GFF4822 0.25 -0.6
194,026 + GFF4822 0.25 -1.6
194,027 - GFF4822 0.25 +0.2
194,027 - GFF4822 0.25 +0.9
194,027 - GFF4822 0.25 +0.2
194,178 + GFF4822 0.34 +0.4
194,179 - GFF4822 0.34 +0.8
194,179 - GFF4822 0.34 -0.3
194,179 - GFF4822 0.34 +0.6
194,348 - GFF4822 0.44 -0.1
194,458 + GFF4822 0.50 -0.8
194,537 - GFF4822 0.55 -0.5
194,654 - GFF4822 0.62 +0.6
194,815 + GFF4822 0.71 -1.0
195,136 + GFF4822 0.89 -1.4
195,136 + GFF4822 0.89 -0.8
195,137 - GFF4822 0.89 -1.2
195,142 + GFF4822 0.90 +0.7
195,560 + +0.4
195,560 + -0.9
195,560 + -2.1
195,560 + +0.4
195,560 + -0.0
195,560 + -0.5
195,561 - +0.2
195,561 - -1.8
195,561 - -0.4
195,561 - +1.3
195,561 - -0.5
195,618 + +0.3
195,619 - +0.6
195,744 + -0.3
195,745 - -0.1
195,799 + GFF4824 0.14 -0.1
195,799 + GFF4824 0.14 +0.4
195,800 - GFF4824 0.14 +0.4
195,800 - GFF4824 0.14 -1.2
195,800 - GFF4824 0.14 -0.3

Or see this region's nucleotide sequence