Strain Fitness in Variovorax sp. SCN45 around GFF4810

Experiment: M9 with calcium pantothenate 10 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF4807 and GFF4808 are separated by 32 nucleotidesGFF4808 and GFF4809 are separated by 30 nucleotidesGFF4809 and GFF4810 are separated by 137 nucleotidesGFF4810 and GFF4811 are separated by 263 nucleotides GFF4807 - Uncharacterized GST-like protein yncG, at 176,817 to 177,503 GFF4807 GFF4808 - 6,7-dimethyl-8-ribityllumazine synthase paralog, at 177,536 to 178,048 GFF4808 GFF4809 - no description, at 178,079 to 178,276 GFF4809 GFF4810 - Ferrichrome-iron receptor, at 178,414 to 180,603 GFF4810 GFF4811 - FIG074102: hypothetical protein, at 180,867 to 181,958 GFF4811 Position (kb) 178 179 180 181Strain fitness (log2 ratio) -2 -1 0 1 2at 177.460 kb on + strandat 177.460 kb on + strandat 177.460 kb on + strandat 177.461 kb on - strandat 177.469 kb on + strandat 177.469 kb on + strandat 177.479 kb on + strandat 177.480 kb on - strandat 177.514 kb on + strandat 177.514 kb on + strandat 177.515 kb on - strandat 177.515 kb on - strandat 177.515 kb on - strandat 177.515 kb on - strandat 177.636 kb on + strand, within GFF4808at 177.636 kb on + strand, within GFF4808at 177.636 kb on + strand, within GFF4808at 177.637 kb on - strand, within GFF4808at 177.637 kb on - strand, within GFF4808at 177.810 kb on + strand, within GFF4808at 177.810 kb on + strand, within GFF4808at 177.811 kb on - strand, within GFF4808at 177.811 kb on - strand, within GFF4808at 177.811 kb on - strand, within GFF4808at 177.811 kb on - strand, within GFF4808at 178.350 kb on - strandat 178.424 kb on + strandat 178.424 kb on + strandat 178.460 kb on + strandat 178.460 kb on + strandat 178.460 kb on + strandat 178.460 kb on + strandat 178.461 kb on - strandat 178.461 kb on - strandat 178.509 kb on + strandat 178.509 kb on + strandat 178.510 kb on - strandat 178.774 kb on - strand, within GFF4810at 178.775 kb on + strand, within GFF4810at 178.775 kb on + strand, within GFF4810at 178.776 kb on - strand, within GFF4810at 178.781 kb on + strand, within GFF4810at 178.781 kb on + strand, within GFF4810at 178.781 kb on + strand, within GFF4810at 178.781 kb on + strand, within GFF4810at 178.781 kb on + strand, within GFF4810at 178.781 kb on + strand, within GFF4810at 178.781 kb on + strand, within GFF4810at 178.781 kb on + strand, within GFF4810at 178.781 kb on + strand, within GFF4810at 178.781 kb on + strand, within GFF4810at 178.781 kb on + strand, within GFF4810at 178.782 kb on - strand, within GFF4810at 178.782 kb on - strand, within GFF4810at 178.782 kb on - strand, within GFF4810at 178.782 kb on - strand, within GFF4810at 178.782 kb on - strand, within GFF4810at 178.782 kb on - strand, within GFF4810at 178.782 kb on - strand, within GFF4810at 178.782 kb on - strand, within GFF4810at 178.782 kb on - strand, within GFF4810at 178.823 kb on + strand, within GFF4810at 178.824 kb on - strand, within GFF4810at 178.922 kb on + strand, within GFF4810at 178.922 kb on + strand, within GFF4810at 178.922 kb on + strand, within GFF4810at 179.036 kb on - strand, within GFF4810at 179.057 kb on + strand, within GFF4810at 179.057 kb on + strand, within GFF4810at 179.058 kb on - strand, within GFF4810at 179.058 kb on - strand, within GFF4810at 179.067 kb on - strand, within GFF4810at 179.067 kb on - strand, within GFF4810at 179.067 kb on - strand, within GFF4810at 179.067 kb on - strand, within GFF4810at 179.067 kb on - strand, within GFF4810at 179.067 kb on - strand, within GFF4810at 179.093 kb on + strand, within GFF4810at 179.093 kb on + strand, within GFF4810at 179.094 kb on - strand, within GFF4810at 179.094 kb on - strand, within GFF4810at 179.211 kb on - strand, within GFF4810at 179.231 kb on + strand, within GFF4810at 179.273 kb on + strand, within GFF4810at 179.274 kb on - strand, within GFF4810at 179.274 kb on - strand, within GFF4810at 179.274 kb on - strand, within GFF4810at 179.291 kb on + strand, within GFF4810at 179.291 kb on + strand, within GFF4810at 179.291 kb on + strand, within GFF4810at 179.291 kb on + strand, within GFF4810at 179.291 kb on + strand, within GFF4810at 179.292 kb on - strand, within GFF4810at 179.292 kb on - strand, within GFF4810at 179.300 kb on + strand, within GFF4810at 179.312 kb on + strand, within GFF4810at 179.312 kb on + strand, within GFF4810at 179.313 kb on - strand, within GFF4810at 179.313 kb on - strand, within GFF4810at 179.562 kb on - strand, within GFF4810at 179.573 kb on + strand, within GFF4810at 179.573 kb on + strand, within GFF4810at 179.573 kb on + strand, within GFF4810at 179.573 kb on + strand, within GFF4810at 179.573 kb on + strand, within GFF4810at 179.574 kb on - strand, within GFF4810at 179.574 kb on - strand, within GFF4810at 179.574 kb on - strand, within GFF4810at 179.574 kb on - strand, within GFF4810at 179.649 kb on - strand, within GFF4810at 179.924 kb on + strand, within GFF4810at 180.128 kb on + strand, within GFF4810at 180.128 kb on + strand, within GFF4810at 180.129 kb on - strand, within GFF4810at 180.129 kb on - strand, within GFF4810at 180.152 kb on + strand, within GFF4810at 180.152 kb on + strand, within GFF4810at 180.153 kb on - strand, within GFF4810at 180.153 kb on - strand, within GFF4810at 180.153 kb on - strand, within GFF4810at 180.153 kb on - strand, within GFF4810at 180.162 kb on - strand, within GFF4810at 180.162 kb on - strand, within GFF4810at 180.162 kb on - strand, within GFF4810at 180.162 kb on - strand, within GFF4810at 180.186 kb on - strand, within GFF4810at 180.239 kb on + strand, within GFF4810at 180.240 kb on - strand, within GFF4810at 180.263 kb on + strand, within GFF4810at 180.264 kb on - strand, within GFF4810at 180.264 kb on - strand, within GFF4810at 180.264 kb on - strand, within GFF4810at 180.264 kb on - strand, within GFF4810at 180.264 kb on - strand, within GFF4810at 180.264 kb on - strand, within GFF4810at 180.854 kb on - strandat 180.854 kb on - strandat 181.042 kb on + strand, within GFF4811at 181.043 kb on - strand, within GFF4811at 181.075 kb on + strand, within GFF4811at 181.075 kb on + strand, within GFF4811at 181.091 kb on - strand, within GFF4811at 181.091 kb on - strand, within GFF4811at 181.091 kb on - strand, within GFF4811at 181.091 kb on - strand, within GFF4811at 181.330 kb on + strand, within GFF4811at 181.330 kb on + strand, within GFF4811at 181.331 kb on - strand, within GFF4811at 181.331 kb on - strand, within GFF4811at 181.331 kb on - strand, within GFF4811at 181.451 kb on - strand, within GFF4811at 181.499 kb on - strand, within GFF4811at 181.550 kb on - strand, within GFF4811at 181.550 kb on - strand, within GFF4811

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL
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177,460 + -0.1
177,460 + -1.2
177,460 + +0.1
177,461 - +0.1
177,469 + -0.4
177,469 + -0.1
177,479 + -0.9
177,480 - +0.7
177,514 + +0.9
177,514 + -0.1
177,515 - -0.1
177,515 - +0.1
177,515 - -1.4
177,515 - -1.2
177,636 + GFF4808 0.19 -0.1
177,636 + GFF4808 0.19 -0.2
177,636 + GFF4808 0.19 +1.1
177,637 - GFF4808 0.20 +1.1
177,637 - GFF4808 0.20 +1.0
177,810 + GFF4808 0.53 -0.5
177,810 + GFF4808 0.53 +0.1
177,811 - GFF4808 0.54 -1.1
177,811 - GFF4808 0.54 -1.6
177,811 - GFF4808 0.54 -1.1
177,811 - GFF4808 0.54 -0.2
178,350 - -1.2
178,424 + +0.3
178,424 + -0.4
178,460 + -0.2
178,460 + -0.1
178,460 + -2.1
178,460 + +1.2
178,461 - -0.3
178,461 - +0.5
178,509 + -0.2
178,509 + -0.0
178,510 - +1.4
178,774 - GFF4810 0.16 +0.3
178,775 + GFF4810 0.16 -0.5
178,775 + GFF4810 0.16 +0.1
178,776 - GFF4810 0.17 -0.1
178,781 + GFF4810 0.17 +0.3
178,781 + GFF4810 0.17 -0.3
178,781 + GFF4810 0.17 -0.5
178,781 + GFF4810 0.17 -1.2
178,781 + GFF4810 0.17 +0.6
178,781 + GFF4810 0.17 +0.2
178,781 + GFF4810 0.17 -0.4
178,781 + GFF4810 0.17 +1.3
178,781 + GFF4810 0.17 +1.0
178,781 + GFF4810 0.17 +0.4
178,781 + GFF4810 0.17 +0.0
178,782 - GFF4810 0.17 -0.5
178,782 - GFF4810 0.17 -1.1
178,782 - GFF4810 0.17 -0.7
178,782 - GFF4810 0.17 -0.3
178,782 - GFF4810 0.17 -0.3
178,782 - GFF4810 0.17 -0.1
178,782 - GFF4810 0.17 +0.8
178,782 - GFF4810 0.17 +0.7
178,782 - GFF4810 0.17 +0.3
178,823 + GFF4810 0.19 -0.2
178,824 - GFF4810 0.19 -0.6
178,922 + GFF4810 0.23 -1.9
178,922 + GFF4810 0.23 -0.7
178,922 + GFF4810 0.23 -0.8
179,036 - GFF4810 0.28 -0.0
179,057 + GFF4810 0.29 -0.1
179,057 + GFF4810 0.29 +0.7
179,058 - GFF4810 0.29 -0.9
179,058 - GFF4810 0.29 +0.1
179,067 - GFF4810 0.30 -0.2
179,067 - GFF4810 0.30 +0.0
179,067 - GFF4810 0.30 +0.2
179,067 - GFF4810 0.30 +2.4
179,067 - GFF4810 0.30 +0.3
179,067 - GFF4810 0.30 -0.1
179,093 + GFF4810 0.31 +0.4
179,093 + GFF4810 0.31 -0.7
179,094 - GFF4810 0.31 -1.8
179,094 - GFF4810 0.31 +0.1
179,211 - GFF4810 0.36 -0.2
179,231 + GFF4810 0.37 +0.7
179,273 + GFF4810 0.39 -0.1
179,274 - GFF4810 0.39 +0.5
179,274 - GFF4810 0.39 -0.6
179,274 - GFF4810 0.39 -0.4
179,291 + GFF4810 0.40 +0.4
179,291 + GFF4810 0.40 +0.4
179,291 + GFF4810 0.40 +0.2
179,291 + GFF4810 0.40 -0.4
179,291 + GFF4810 0.40 -0.4
179,292 - GFF4810 0.40 -1.7
179,292 - GFF4810 0.40 +0.8
179,300 + GFF4810 0.40 -0.9
179,312 + GFF4810 0.41 -0.6
179,312 + GFF4810 0.41 +0.4
179,313 - GFF4810 0.41 -0.0
179,313 - GFF4810 0.41 +1.4
179,562 - GFF4810 0.52 -0.3
179,573 + GFF4810 0.53 -0.4
179,573 + GFF4810 0.53 +0.5
179,573 + GFF4810 0.53 +0.1
179,573 + GFF4810 0.53 -0.6
179,573 + GFF4810 0.53 -0.1
179,574 - GFF4810 0.53 -0.9
179,574 - GFF4810 0.53 +1.0
179,574 - GFF4810 0.53 +0.2
179,574 - GFF4810 0.53 -0.3
179,649 - GFF4810 0.56 +0.5
179,924 + GFF4810 0.69 +0.4
180,128 + GFF4810 0.78 -1.7
180,128 + GFF4810 0.78 +1.4
180,129 - GFF4810 0.78 -0.4
180,129 - GFF4810 0.78 -0.5
180,152 + GFF4810 0.79 -0.6
180,152 + GFF4810 0.79 +0.8
180,153 - GFF4810 0.79 -1.1
180,153 - GFF4810 0.79 +0.6
180,153 - GFF4810 0.79 -0.2
180,153 - GFF4810 0.79 +1.6
180,162 - GFF4810 0.80 -0.2
180,162 - GFF4810 0.80 -0.8
180,162 - GFF4810 0.80 -0.3
180,162 - GFF4810 0.80 +0.7
180,186 - GFF4810 0.81 -0.9
180,239 + GFF4810 0.83 -1.1
180,240 - GFF4810 0.83 -0.4
180,263 + GFF4810 0.84 +0.3
180,264 - GFF4810 0.84 +0.8
180,264 - GFF4810 0.84 -2.1
180,264 - GFF4810 0.84 -0.8
180,264 - GFF4810 0.84 -0.1
180,264 - GFF4810 0.84 +0.3
180,264 - GFF4810 0.84 +0.0
180,854 - +1.4
180,854 - -0.1
181,042 + GFF4811 0.16 +0.4
181,043 - GFF4811 0.16 +0.8
181,075 + GFF4811 0.19 -0.3
181,075 + GFF4811 0.19 -0.4
181,091 - GFF4811 0.21 -0.5
181,091 - GFF4811 0.21 -0.1
181,091 - GFF4811 0.21 -0.3
181,091 - GFF4811 0.21 -0.7
181,330 + GFF4811 0.42 +0.6
181,330 + GFF4811 0.42 -2.1
181,331 - GFF4811 0.42 -0.8
181,331 - GFF4811 0.42 +1.0
181,331 - GFF4811 0.42 -0.3
181,451 - GFF4811 0.53 +0.8
181,499 - GFF4811 0.58 -0.4
181,550 - GFF4811 0.63 -0.9
181,550 - GFF4811 0.63 +0.5

Or see this region's nucleotide sequence