Strain Fitness in Variovorax sp. SCN45 around GFF4725

Experiment: M9 with calcium pantothenate 10 mg/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9 with calcium pantothenate 10 mg/mL
85,992	-				+0.8
85,992	-				-1.8
85,992	-				-1.4
86,390	+		GFF4724	0.31	-2.6
86,391	-		GFF4724	0.31	-1.1
86,391	-		GFF4724	0.31	-2.3
86,391	-		GFF4724	0.31	-1.7
86,391	-		GFF4724	0.31	-0.6
86,391	-		GFF4724	0.31	-0.2
86,391	-		GFF4724	0.31	-1.9
86,391	-		GFF4724	0.31	-2.6
86,417	+		GFF4724	0.34	-0.4
86,417	+		GFF4724	0.34	-1.2
86,418	-		GFF4724	0.34	-4.6
86,786	+		GFF4724	0.80	-0.8
86,786	+		GFF4724	0.80	-0.6
86,786	+		GFF4724	0.80	-2.1
86,787	-		GFF4724	0.80	-1.8
87,037	+		GFF4725	0.10	-1.7
87,037	+		GFF4725	0.10	+0.2
87,037	+		GFF4725	0.10	-0.3
87,268	+		GFF4725	0.36	-0.4
87,268	+		GFF4725	0.36	+0.2
87,268	+		GFF4725	0.36	-2.7
87,269	-		GFF4725	0.36	+1.4
87,453	+		GFF4725	0.56	-0.2
87,453	+		GFF4725	0.56	-0.9
87,454	-		GFF4725	0.56	-0.9
87,454	-		GFF4725	0.56	-1.2
87,454	-		GFF4725	0.56	-0.2
87,595	+		GFF4725	0.72	-0.9
87,595	+		GFF4725	0.72	-1.8
87,596	-		GFF4725	0.72	-0.4
87,596	-		GFF4725	0.72	-1.7
87,596	-		GFF4725	0.72	-2.2
87,596	-		GFF4725	0.72	-2.6
87,835	+				-1.4
87,835	+				-2.3
87,835	+				-1.4
87,835	+				-2.1
87,835	+				-0.6
87,836	-				-1.0
87,836	-				-1.6
87,878	+				+0.5
87,879	-				+0.4
87,879	-				+0.1
87,879	-				+0.6
87,879	-				+0.8
87,900	+				-1.2
88,068	+				-2.3
88,069	-				-0.4
88,069	-				-0.7
88,069	-				+0.1
88,072	+				+0.3
88,073	-				+0.1
88,163	+				-0.5
88,164	+				-0.9
88,164	+				+1.4
88,164	+				+1.0
88,165	-				-0.6
88,165	-				-1.0
88,168	+				-1.4
88,168	+				-0.5
88,168	+				+0.1
88,168	+				-0.0
88,168	+				-0.9
88,168	+				+0.2
88,168	+				-0.7
88,169	-				-0.1
88,169	-				+0.3
88,169	-				-0.7
88,169	-				-0.0
88,169	-				-0.2
88,420	+		GFF4726	0.19	-0.2
88,674	+		GFF4726	0.29	-0.8
88,675	-		GFF4726	0.29	-0.2
88,675	-		GFF4726	0.29	-2.3
88,675	-		GFF4726	0.29	+0.6
88,726	-		GFF4726	0.32	-0.9
88,726	-		GFF4726	0.32	-0.9
88,726	-		GFF4726	0.32	-0.8
88,726	-		GFF4726	0.32	-0.4
88,840	-		GFF4726	0.36	-1.7