Strain Fitness in Variovorax sp. SCN45 around GFF4672

Experiment: M9 with calcium pantothenate 10 mg/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9 with calcium pantothenate 10 mg/mL
28,294	-		GFF4671	0.28	-0.6
28,301	+		GFF4671	0.28	-0.4
28,302	-		GFF4671	0.29	-0.2
28,325	+		GFF4671	0.30	+0.3
28,325	+		GFF4671	0.30	-0.9
28,325	+		GFF4671	0.30	-0.1
28,326	-		GFF4671	0.31	-0.3
28,440	-		GFF4671	0.40	-1.1
28,829	+		GFF4671	0.72	+0.5
28,829	+		GFF4671	0.72	+0.0
28,829	+		GFF4671	0.72	-0.0
28,830	-		GFF4671	0.72	+0.1
28,922	+		GFF4671	0.80	-0.3
28,922	+		GFF4671	0.80	+0.4
28,922	+		GFF4671	0.80	-1.5
28,923	-		GFF4671	0.80	-0.2
29,076	-				+0.4
29,169	-				-0.3
29,169	-				+0.2
29,237	+				-0.2
29,237	+				-1.3
29,238	-				-1.2
29,388	-		GFF4672	0.10	+0.7
29,588	+		GFF4672	0.22	+1.4
29,588	+		GFF4672	0.22	-1.2
29,588	+		GFF4672	0.22	-1.1
29,589	-		GFF4672	0.22	+0.1
29,589	-		GFF4672	0.22	-0.7
29,589	-		GFF4672	0.22	-0.8
29,772	-		GFF4672	0.33	-0.7
29,841	-		GFF4672	0.37	-1.4
30,015	-		GFF4672	0.47	+0.1
30,050	+		GFF4672	0.50	-0.8
30,051	-		GFF4672	0.50	-1.4
30,081	-		GFF4672	0.51	+0.1
30,122	+		GFF4672	0.54	+0.4
30,537	-		GFF4672	0.78	-1.3
30,693	-		GFF4672	0.88	-0.1
30,693	-		GFF4672	0.88	-0.8
30,791	+				-1.4
30,791	+				-0.0
30,791	+				-0.4
30,792	-				+0.7
30,792	-				-0.2
30,792	-				+0.5
30,816	+				-1.0
30,817	-				+0.8
30,906	+				+0.2
30,906	+				-1.6
30,906	+				+1.0
30,907	-				-1.2
30,907	-				+0.4
30,907	-				-0.4
30,990	+				-1.5
30,990	+				-0.4
30,991	-				-0.5
30,991	-				-0.9
30,991	-				-0.8
31,005	+				-2.4
31,005	+				-0.2
31,005	+				-0.4
31,005	+				-2.4
31,005	+				-1.3
31,006	-				-1.3
31,006	-				+0.1
31,006	-				-1.2
31,006	-				-0.5
31,006	-				-0.9
31,163	+		GFF4673	0.30	+1.4
31,263	+		GFF4673	0.43	+0.3
31,263	+		GFF4673	0.43	-1.5
31,263	+		GFF4673	0.43	-0.1
31,263	+		GFF4673	0.43	+0.8
31,263	+		GFF4673	0.43	-1.0
31,263	+		GFF4673	0.43	-0.6
31,264	-		GFF4673	0.43	+0.4
31,264	-		GFF4673	0.43	-0.4
31,264	-		GFF4673	0.43	+0.4
31,264	-		GFF4673	0.43	-0.7
31,264	-		GFF4673	0.43	-1.0
31,264	-		GFF4673	0.43	-0.4
31,276	-		GFF4673	0.45	+0.5
31,276	-		GFF4673	0.45	-1.0
31,276	-		GFF4673	0.45	-1.0
31,467	+		GFF4673	0.70	+0.4
31,467	+		GFF4673	0.70	+0.4
31,467	+		GFF4673	0.70	-1.4
31,468	-		GFF4673	0.70	+0.6
31,468	-		GFF4673	0.70	+0.3
31,468	-		GFF4673	0.70	-0.4
31,468	-		GFF4673	0.70	-0.5
31,468	-		GFF4673	0.70	+0.2
31,563	+		GFF4673	0.82	-0.1
31,563	+		GFF4673	0.82	-0.3
31,563	+		GFF4673	0.82	+0.3
31,563	+		GFF4673	0.82	-0.5
31,563	+		GFF4673	0.82	-0.8
31,563	+		GFF4673	0.82	-0.4
31,563	+		GFF4673	0.82	+0.8
31,564	-		GFF4673	0.82	-0.2
31,564	-		GFF4673	0.82	-0.6
31,564	-		GFF4673	0.82	-0.8
31,572	+		GFF4673	0.83	-0.1
31,573	-		GFF4673	0.83	-1.5
31,573	-		GFF4673	0.83	-2.5
31,573	-		GFF4673	0.83	-0.1
31,573	-		GFF4673	0.83	+0.1
31,720	+				-0.5
31,720	+				-0.5
31,720	+				+1.1
31,721	-				+1.5
31,772	+				-0.7
31,772	+				+0.4
31,772	+				-0.8
31,772	+				+0.1
31,772	+				+0.7
31,772	+				-0.4
31,772	+				-0.5
31,772	+				-0.5
31,772	+				+0.1
31,772	+				-0.0
31,772	+				-1.2
31,773	-				-0.6
31,773	-				-0.3
31,773	-				-0.6
31,773	-				-1.2
31,773	-				+0.7
31,773	-				-0.4
31,773	-				-0.2
31,773	-				-0.3
31,773	-				+0.1
31,773	-				-1.2
31,773	-				-0.4
31,773	-				-0.7
31,773	-				-0.4
31,773	-				-0.1
31,773	-				+0.8
31,773	-				-1.2
31,773	-				-1.6
31,773	-				-0.2
31,793	+				-0.3
31,793	+				-0.9
31,793	+				-2.1
31,794	-				-0.3
31,794	-				+0.4