Experiment: M9 with calcium pantothenate 10 mg/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4615 and GFF4616 are separated by 26 nucleotides GFF4616 and GFF4617 overlap by 4 nucleotides GFF4617 and GFF4618 are separated by 110 nucleotides GFF4618 and GFF4619 are separated by 34 nucleotides
GFF4615 - 5-oxopent-3-ene-1,2,5-tricarboxylate decarboxylase, at 257,315 to 258,163
GFF4615
GFF4616 - Oxidoreductase, short-chain dehydrogenase/reductase family, at 258,190 to 258,936
GFF4616
GFF4617 - 2-keto-3-deoxy-L-fuconate dehydrogenase, at 258,933 to 259,667
GFF4617
GFF4618 - Hexuronate utilization operon transcriptional repressor ExuR, at 259,778 to 260,485
GFF4618
GFF4619 - Altronate dehydratase (EC 4.2.1.7), at 260,520 to 262,058
GFF4619
Position (kb) 258
259
260 Strain fitness (log2 ratio) -2
-1
0
1
2 at 258.194 kb on + strand at 258.194 kb on + strand at 258.195 kb on - strand at 258.195 kb on - strand at 258.195 kb on - strand at 258.195 kb on - strand at 258.195 kb on - strand at 258.195 kb on - strand at 258.195 kb on - strand at 258.195 kb on - strand at 258.195 kb on - strand at 258.195 kb on - strand at 258.537 kb on - strand, within GFF4616 at 258.936 kb on + strand at 258.937 kb on - strand at 258.937 kb on - strand at 259.177 kb on + strand, within GFF4617 at 259.177 kb on + strand, within GFF4617 at 259.178 kb on - strand, within GFF4617 at 259.534 kb on + strand, within GFF4617 at 259.535 kb on - strand, within GFF4617 at 259.711 kb on - strand at 259.711 kb on - strand at 259.715 kb on + strand at 259.715 kb on + strand at 259.715 kb on - strand at 259.716 kb on - strand at 259.716 kb on - strand at 259.716 kb on - strand at 259.732 kb on - strand at 259.974 kb on + strand, within GFF4618 at 259.974 kb on + strand, within GFF4618 at 259.975 kb on - strand, within GFF4618 at 259.994 kb on + strand, within GFF4618 at 259.995 kb on - strand, within GFF4618 at 259.995 kb on - strand, within GFF4618 at 259.995 kb on - strand, within GFF4618 at 260.316 kb on - strand, within GFF4618 at 260.319 kb on - strand, within GFF4618 at 260.319 kb on - strand, within GFF4618 at 260.529 kb on + strand at 260.530 kb on - strand at 260.530 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL remove 258,194 + -0.8 258,194 + -0.0 258,195 - -0.8 258,195 - +0.3 258,195 - -1.2 258,195 - -0.2 258,195 - -1.4 258,195 - +1.0 258,195 - -0.2 258,195 - +0.2 258,195 - -0.3 258,195 - -0.0 258,537 - GFF4616 0.46 -0.2 258,936 + +0.6 258,937 - -1.9 258,937 - -0.2 259,177 + GFF4617 0.33 -1.4 259,177 + GFF4617 0.33 -1.3 259,178 - GFF4617 0.33 -0.8 259,534 + GFF4617 0.82 -0.4 259,535 - GFF4617 0.82 -1.0 259,711 - +0.5 259,711 - -1.8 259,715 + -0.7 259,715 + +0.2 259,715 - -0.3 259,716 - -1.0 259,716 - -0.4 259,716 - -1.3 259,732 - -1.0 259,974 + GFF4618 0.28 +1.0 259,974 + GFF4618 0.28 -0.0 259,975 - GFF4618 0.28 +1.8 259,994 + GFF4618 0.31 -0.3 259,995 - GFF4618 0.31 -0.0 259,995 - GFF4618 0.31 +0.8 259,995 - GFF4618 0.31 -0.2 260,316 - GFF4618 0.76 +1.8 260,319 - GFF4618 0.76 +0.4 260,319 - GFF4618 0.76 -0.4 260,529 + +0.2 260,530 - -1.1 260,530 - -1.4
Or see this region's nucleotide sequence