Experiment: M9 with calcium pantothenate 10 mg/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4585 and GFF4586 are separated by 80 nucleotides GFF4586 and GFF4587 are separated by 19 nucleotides GFF4587 and GFF4588 are separated by 69 nucleotides
GFF4585 - hypothetical protein, at 226,556 to 227,521
GFF4585
GFF4586 - no description, at 227,602 to 228,063
GFF4586
GFF4587 - Dienelactone hydrolase family protein, at 228,083 to 228,910
GFF4587
GFF4588 - Inosine-uridine preferring nucleoside hydrolase (EC 3.2.2.1), at 228,980 to 229,957
GFF4588
Position (kb) 228
229 Strain fitness (log2 ratio) -1
0
1 at 227.100 kb on + strand, within GFF4585 at 227.100 kb on + strand, within GFF4585 at 227.101 kb on - strand, within GFF4585 at 227.325 kb on - strand, within GFF4585 at 227.595 kb on + strand at 227.595 kb on + strand at 227.803 kb on + strand, within GFF4586 at 227.803 kb on + strand, within GFF4586 at 227.804 kb on - strand, within GFF4586 at 227.869 kb on + strand, within GFF4586 at 227.990 kb on + strand, within GFF4586 at 227.990 kb on + strand, within GFF4586 at 227.991 kb on - strand, within GFF4586 at 228.025 kb on + strand at 228.176 kb on + strand, within GFF4587 at 228.176 kb on + strand, within GFF4587 at 228.176 kb on + strand, within GFF4587 at 228.177 kb on - strand, within GFF4587 at 228.177 kb on - strand, within GFF4587 at 228.284 kb on + strand, within GFF4587 at 228.285 kb on - strand, within GFF4587 at 228.285 kb on - strand, within GFF4587 at 229.209 kb on - strand, within GFF4588 at 229.247 kb on + strand, within GFF4588 at 229.295 kb on + strand, within GFF4588 at 229.295 kb on + strand, within GFF4588 at 229.296 kb on - strand, within GFF4588 at 229.337 kb on + strand, within GFF4588 at 229.691 kb on + strand, within GFF4588 at 229.692 kb on - strand, within GFF4588 at 229.692 kb on - strand, within GFF4588 at 229.715 kb on + strand, within GFF4588 at 229.715 kb on + strand, within GFF4588 at 229.715 kb on + strand, within GFF4588 at 229.716 kb on - strand, within GFF4588 at 229.716 kb on - strand, within GFF4588 at 229.748 kb on - strand, within GFF4588 at 229.760 kb on + strand, within GFF4588 at 229.761 kb on - strand, within GFF4588 at 229.761 kb on - strand, within GFF4588 at 229.761 kb on - strand, within GFF4588 at 229.761 kb on - strand, within GFF4588 at 229.761 kb on - strand, within GFF4588 at 229.761 kb on - strand, within GFF4588
Per-strain Table
Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL remove 227,100 + GFF4585 0.56 -0.2 227,100 + GFF4585 0.56 +0.1 227,101 - GFF4585 0.56 -0.0 227,325 - GFF4585 0.80 -0.4 227,595 + -0.2 227,595 + -0.2 227,803 + GFF4586 0.44 -0.2 227,803 + GFF4586 0.44 +0.8 227,804 - GFF4586 0.44 -1.1 227,869 + GFF4586 0.58 -1.0 227,990 + GFF4586 0.84 -0.0 227,990 + GFF4586 0.84 +0.0 227,991 - GFF4586 0.84 -1.2 228,025 + +0.2 228,176 + GFF4587 0.11 -0.1 228,176 + GFF4587 0.11 +0.2 228,176 + GFF4587 0.11 +1.2 228,177 - GFF4587 0.11 -0.2 228,177 - GFF4587 0.11 -1.4 228,284 + GFF4587 0.24 +0.2 228,285 - GFF4587 0.24 -0.6 228,285 - GFF4587 0.24 +0.4 229,209 - GFF4588 0.23 -1.3 229,247 + GFF4588 0.27 +0.5 229,295 + GFF4588 0.32 -1.0 229,295 + GFF4588 0.32 -0.5 229,296 - GFF4588 0.32 -0.2 229,337 + GFF4588 0.37 +0.5 229,691 + GFF4588 0.73 -0.2 229,692 - GFF4588 0.73 -0.3 229,692 - GFF4588 0.73 -1.0 229,715 + GFF4588 0.75 -1.5 229,715 + GFF4588 0.75 -0.6 229,715 + GFF4588 0.75 -0.1 229,716 - GFF4588 0.75 -0.1 229,716 - GFF4588 0.75 -0.1 229,748 - GFF4588 0.79 +0.2 229,760 + GFF4588 0.80 -1.2 229,761 - GFF4588 0.80 -0.1 229,761 - GFF4588 0.80 -0.0 229,761 - GFF4588 0.80 -0.2 229,761 - GFF4588 0.80 -1.0 229,761 - GFF4588 0.80 -0.8 229,761 - GFF4588 0.80 +0.2
Or see this region's nucleotide sequence