Strain Fitness in Variovorax sp. SCN45 around GFF4377

Experiment: M9 with calcium pantothenate 10 mg/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9 with calcium pantothenate 10 mg/mL
6,592	+				-0.9
6,728	+				+0.1
6,779	-		GFF4376	0.16	-0.8
6,784	+		GFF4376	0.17	+1.0
6,784	+		GFF4376	0.17	-0.9
6,784	+		GFF4376	0.17	+2.4
6,784	+		GFF4376	0.17	-1.2
6,784	+		GFF4376	0.17	-0.5
6,784	+		GFF4376	0.17	-0.4
6,784	+		GFF4376	0.17	-0.3
6,784	+		GFF4376	0.17	+0.5
6,784	+		GFF4376	0.17	+0.4
6,784	+		GFF4376	0.17	-0.8
6,784	+		GFF4376	0.17	+0.9
6,784	+		GFF4376	0.17	+0.2
6,784	+		GFF4376	0.17	+0.3
6,784	+		GFF4376	0.17	-0.4
6,784	+		GFF4376	0.17	+0.1
6,784	+		GFF4376	0.17	-0.2
6,784	+		GFF4376	0.17	+0.1
6,784	+		GFF4376	0.17	+0.4
6,784	+		GFF4376	0.17	-1.2
6,784	+		GFF4376	0.17	-0.2
6,784	+		GFF4376	0.17	-1.2
6,784	+		GFF4376	0.17	-0.2
6,784	+		GFF4376	0.17	-0.8
6,785	-		GFF4376	0.17	+0.8
6,785	-		GFF4376	0.17	-0.6
6,785	-		GFF4376	0.17	-0.2
6,785	-		GFF4376	0.17	+0.4
6,785	-		GFF4376	0.17	+0.0
6,785	-		GFF4376	0.17	+0.8
6,785	-		GFF4376	0.17	-0.7
6,785	-		GFF4376	0.17	+0.2
6,785	-		GFF4376	0.17	-0.3
6,785	-		GFF4376	0.17	-0.1
6,785	-		GFF4376	0.17	-0.2
6,785	-		GFF4376	0.17	-1.0
6,785	-		GFF4376	0.17	+0.4
6,785	-		GFF4376	0.17	-0.4
6,785	-		GFF4376	0.17	+2.1
6,785	-		GFF4376	0.17	-0.8
6,785	-		GFF4376	0.17	-0.3
6,786	+		GFF4376	0.17	-0.4
6,786	+		GFF4376	0.17	+0.0
6,786	+		GFF4376	0.17	-0.0
6,786	+		GFF4376	0.17	+0.2
6,787	-		GFF4376	0.17	-0.2
6,787	-		GFF4376	0.17	-0.2
6,787	-		GFF4376	0.17	+1.8
6,885	+		GFF4376	0.29	-0.3
6,885	+		GFF4376	0.29	+0.3
6,886	-		GFF4376	0.29	+0.3
6,886	-		GFF4376	0.29	+0.6
6,982	+		GFF4376	0.40	-0.9
6,982	+		GFF4376	0.40	-0.3
6,982	+		GFF4376	0.40	-1.3
7,105	+		GFF4376	0.55	-1.4
7,105	+		GFF4376	0.55	+1.4
7,105	+		GFF4376	0.55	+0.2
7,106	-		GFF4376	0.55	-0.1
7,106	-		GFF4376	0.55	-0.1
7,219	+		GFF4376	0.69	+0.2
7,219	+		GFF4376	0.69	-0.6
7,219	+		GFF4376	0.69	+0.4
7,219	+		GFF4376	0.69	-1.0
7,219	+		GFF4376	0.69	+0.3
7,220	-		GFF4376	0.69	+2.8
7,220	-		GFF4376	0.69	-2.5
7,220	-		GFF4376	0.69	-0.3
7,397	+				+0.6
7,543	+				-0.3
7,544	-				-0.0
7,550	+				+0.1
7,550	+				+1.2
7,550	+				+0.9
7,550	+				-0.4
7,550	+				+1.4
7,551	-				-2.1
7,551	-				-0.5
7,551	-				-0.6
7,551	-				-0.7
7,551	-				-1.8
7,551	-				+1.5
7,551	-				-0.7
7,551	-				-2.5
7,642	+				+0.1
7,642	+				-0.8
7,642	+				+0.8
7,642	+				-0.3
7,642	+				-1.2
7,643	-				-0.8
7,643	-				+0.5
7,643	-				-1.7
7,643	-				-1.3
7,643	-				+0.3
7,791	+		GFF4377	0.11	+0.8
7,791	+		GFF4377	0.11	-0.5
7,791	+		GFF4377	0.11	-1.0
7,791	+		GFF4377	0.11	-0.2
7,792	-		GFF4377	0.11	+0.0
7,792	-		GFF4377	0.11	+0.2
7,828	+		GFF4377	0.13	-0.5
7,828	+		GFF4377	0.13	+0.9
7,829	-		GFF4377	0.13	-1.0
7,866	+		GFF4377	0.15	-0.4
7,866	+		GFF4377	0.15	-0.3
7,866	+		GFF4377	0.15	+0.1
7,867	-		GFF4377	0.15	+0.2
8,059	-		GFF4377	0.24	+0.9
8,094	+		GFF4377	0.26	-0.4
8,105	+		GFF4377	0.27	-0.0
8,105	+		GFF4377	0.27	-0.5
8,106	-		GFF4377	0.27	-0.1
8,106	-		GFF4377	0.27	+0.5
8,175	+		GFF4377	0.30	-0.7
8,175	+		GFF4377	0.30	-2.3
8,175	+		GFF4377	0.30	-0.3
8,175	+		GFF4377	0.30	+0.1
8,175	+		GFF4377	0.30	+0.5
8,175	+		GFF4377	0.30	-0.1
8,175	+		GFF4377	0.30	+0.6
8,175	+		GFF4377	0.30	-0.8
8,176	-		GFF4377	0.30	-0.1
8,176	-		GFF4377	0.30	+1.5
8,176	-		GFF4377	0.30	+0.5
8,176	-		GFF4377	0.30	-0.1
8,176	-		GFF4377	0.30	-0.2
8,283	+		GFF4377	0.35	-0.6
8,284	-		GFF4377	0.35	-0.0
8,343	+		GFF4377	0.38	-0.5
8,343	+		GFF4377	0.38	-1.0
8,343	+		GFF4377	0.38	+1.5
8,343	+		GFF4377	0.38	-0.6
8,343	+		GFF4377	0.38	+0.7
8,343	+		GFF4377	0.38	-0.0
8,343	+		GFF4377	0.38	-0.1
8,343	+		GFF4377	0.38	-0.4
8,344	-		GFF4377	0.38	+0.9
8,344	-		GFF4377	0.38	-0.8
8,344	-		GFF4377	0.38	+0.8
8,344	-		GFF4377	0.38	-0.8
8,344	-		GFF4377	0.38	+0.7
8,344	-		GFF4377	0.38	+0.0
8,344	-		GFF4377	0.38	+0.1
8,344	-		GFF4377	0.38	+1.5
8,344	-		GFF4377	0.38	+0.3
8,583	+		GFF4377	0.50	+1.8
8,584	-		GFF4377	0.50	+0.1
8,584	-		GFF4377	0.50	+1.1
8,584	-		GFF4377	0.50	-0.5
8,679	+		GFF4377	0.55	-0.0
8,680	-		GFF4377	0.55	+0.4
8,680	-		GFF4377	0.55	-1.4
8,680	-		GFF4377	0.55	-1.4
9,223	+		GFF4377	0.81	-2.0
9,345	+		GFF4377	0.87	+1.0
9,345	+		GFF4377	0.87	+0.2
9,345	+		GFF4377	0.87	+0.7
9,346	-		GFF4377	0.87	+0.4
9,346	-		GFF4377	0.87	+0.9
9,393	+		GFF4377	0.89	-0.3
9,394	-		GFF4377	0.90	+0.6
9,394	-		GFF4377	0.90	+0.2
9,719	+		GFF4378	0.40	-0.0
9,719	+		GFF4378	0.40	-0.5
9,719	+		GFF4378	0.40	-0.2
9,720	-		GFF4378	0.41	-0.3
9,720	-		GFF4378	0.41	+0.5
9,720	-		GFF4378	0.41	-0.3
9,720	-		GFF4378	0.41	+0.4
9,776	+		GFF4378	0.61	-0.7
9,885	-				-0.2
9,885	-				-0.4
10,114	-				+0.3
10,114	-				+0.1
10,179	+				+0.8
10,179	+				+0.4
10,179	+				+0.6
10,179	+				+0.5
10,179	+				-0.3
10,179	+				-0.5
10,179	+				-0.2
10,180	-				+0.4
10,180	-				-0.1
10,180	-				-1.7
10,224	+				+0.3
10,224	+				+0.9
10,224	+				-0.9
10,225	-				-0.2
10,225	-				+0.7
10,225	-				-0.4
10,486	+				+0.0
10,487	-				-0.1