Strain Fitness in Variovorax sp. SCN45 around GFF4101

Experiment: M9 with calcium pantothenate 10 mg/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9 with calcium pantothenate 10 mg/mL
889	+		GFF4100	0.41	-0.6
890	-		GFF4100	0.41	-0.5
890	-		GFF4100	0.41	-0.3
1,009	+		GFF4100	0.48	-0.2
1,195	+		GFF4100	0.60	-0.2
1,196	-		GFF4100	0.60	-0.7
1,213	+		GFF4100	0.61	-0.6
1,312	+		GFF4100	0.67	-0.2
1,313	-		GFF4100	0.67	-0.6
1,402	+		GFF4100	0.73	-1.7
1,402	+		GFF4100	0.73	-0.4
1,403	-		GFF4100	0.73	-1.7
1,403	-		GFF4100	0.73	-0.1
1,556	-		GFF4100	0.83	+2.0
1,618	+		GFF4100	0.86	-0.1
1,619	-		GFF4100	0.86	-0.4
2,714	+		GFF4101	0.48	+0.7
2,715	-		GFF4101	0.48	+0.2
2,715	-		GFF4101	0.48	-0.5
3,024	-		GFF4101	0.66	-0.1
3,055	+		GFF4101	0.68	+0.5
3,144	-		GFF4101	0.73	-0.2
4,428	-		GFF4102	0.48	-1.2