Experiment: M9 with calcium pantothenate 10 mg/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4081 and GFF4082 are separated by 99 nucleotides GFF4082 and GFF4083 are separated by 115 nucleotides GFF4083 and GFF4084 are separated by 44 nucleotides GFF4084 and GFF4085 are separated by 10 nucleotides
GFF4081 - Multicopper oxidase, at 293,046 to 295,061
GFF4081
GFF4082 - KEGG: copper chaperone, at 295,161 to 295,352
GFF4082
GFF4083 - Lead, cadmium, zinc and mercury transporting ATPase (EC 3.6.3.3) (EC 3.6.3.5); Copper-translocating P-type ATPase (EC 3.6.3.4), at 295,468 to 297,903
GFF4083
GFF4084 - hypothetical protein, at 297,948 to 298,166
GFF4084
GFF4085 - Transcriptional regulator, LysR family, at 298,177 to 299,115
GFF4085
Position (kb) 295
296
297
298 Strain fitness (log2 ratio) -1
0
1
2 at 294.480 kb on + strand, within GFF4081 at 294.487 kb on - strand, within GFF4081 at 294.487 kb on - strand, within GFF4081 at 294.522 kb on + strand, within GFF4081 at 294.627 kb on + strand, within GFF4081 at 294.627 kb on + strand, within GFF4081 at 294.865 kb on - strand at 294.980 kb on + strand at 295.694 kb on - strand at 295.694 kb on - strand at 295.777 kb on + strand, within GFF4083 at 295.777 kb on + strand, within GFF4083 at 295.778 kb on - strand, within GFF4083 at 295.778 kb on - strand, within GFF4083 at 296.370 kb on - strand, within GFF4083 at 296.370 kb on - strand, within GFF4083 at 296.678 kb on - strand, within GFF4083 at 297.719 kb on - strand at 297.719 kb on - strand at 297.991 kb on - strand, within GFF4084 at 297.991 kb on - strand, within GFF4084 at 297.991 kb on - strand, within GFF4084 at 298.102 kb on - strand, within GFF4084 at 298.297 kb on + strand, within GFF4085 at 298.437 kb on - strand, within GFF4085
Per-strain Table
Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL remove 294,480 + GFF4081 0.71 -0.3 294,487 - GFF4081 0.71 +0.9 294,487 - GFF4081 0.71 +0.6 294,522 + GFF4081 0.73 -0.0 294,627 + GFF4081 0.78 -1.5 294,627 + GFF4081 0.78 +0.7 294,865 - -0.4 294,980 + -0.5 295,694 - -0.4 295,694 - -0.7 295,777 + GFF4083 0.13 -0.3 295,777 + GFF4083 0.13 +0.5 295,778 - GFF4083 0.13 -0.9 295,778 - GFF4083 0.13 +2.6 296,370 - GFF4083 0.37 -1.6 296,370 - GFF4083 0.37 -0.4 296,678 - GFF4083 0.50 -0.8 297,719 - +0.6 297,719 - -0.7 297,991 - GFF4084 0.20 +1.3 297,991 - GFF4084 0.20 -0.5 297,991 - GFF4084 0.20 +0.5 298,102 - GFF4084 0.70 +0.1 298,297 + GFF4085 0.13 -0.4 298,437 - GFF4085 0.28 -0.0
Or see this region's nucleotide sequence