Strain Fitness in Variovorax sp. SCN45 around GFF3723

Experiment: M9 with calcium pantothenate 10 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3721 and GFF3722 are separated by 19 nucleotidesGFF3722 and GFF3723 are separated by 48 nucleotidesGFF3723 and GFF3724 are separated by 124 nucleotides GFF3721 - Hydrolase, alpha/beta fold family, at 218,025 to 219,002 GFF3721 GFF3722 - FIG00931152: hypothetical protein, at 219,022 to 219,582 GFF3722 GFF3723 - Cytochrome c5, at 219,631 to 220,320 GFF3723 GFF3724 - Efflux transport system, outer membrane factor (OMF) lipoprotein, at 220,445 to 221,872 GFF3724 Position (kb) 219 220 221Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 218.700 kb on + strand, within GFF3721at 218.700 kb on + strand, within GFF3721at 218.700 kb on + strand, within GFF3721at 218.700 kb on + strand, within GFF3721at 218.700 kb on + strand, within GFF3721at 218.701 kb on - strand, within GFF3721at 218.701 kb on - strand, within GFF3721at 218.757 kb on + strand, within GFF3721at 218.757 kb on + strand, within GFF3721at 218.757 kb on + strand, within GFF3721at 218.758 kb on - strand, within GFF3721at 218.758 kb on - strand, within GFF3721at 218.758 kb on - strand, within GFF3721at 219.015 kb on + strandat 219.015 kb on + strandat 219.016 kb on - strandat 219.016 kb on - strandat 219.077 kb on - strandat 219.077 kb on - strandat 219.077 kb on - strandat 219.112 kb on + strand, within GFF3722at 219.112 kb on + strand, within GFF3722at 219.112 kb on + strand, within GFF3722at 219.112 kb on + strand, within GFF3722at 219.112 kb on + strand, within GFF3722at 219.113 kb on - strand, within GFF3722at 219.113 kb on - strand, within GFF3722at 219.113 kb on - strand, within GFF3722at 219.113 kb on - strand, within GFF3722at 219.113 kb on - strand, within GFF3722at 219.113 kb on - strand, within GFF3722at 219.113 kb on - strand, within GFF3722at 219.113 kb on - strand, within GFF3722at 219.211 kb on + strand, within GFF3722at 219.211 kb on + strand, within GFF3722at 219.212 kb on - strand, within GFF3722at 219.212 kb on - strand, within GFF3722at 219.265 kb on + strand, within GFF3722at 219.265 kb on + strand, within GFF3722at 219.266 kb on - strand, within GFF3722at 219.266 kb on - strand, within GFF3722at 219.266 kb on - strand, within GFF3722at 219.266 kb on - strand, within GFF3722at 219.266 kb on - strand, within GFF3722at 219.397 kb on + strand, within GFF3722at 219.397 kb on + strand, within GFF3722at 219.397 kb on + strand, within GFF3722at 219.398 kb on - strand, within GFF3722at 219.398 kb on - strand, within GFF3722at 219.398 kb on - strand, within GFF3722at 219.398 kb on - strand, within GFF3722at 219.620 kb on - strandat 219.620 kb on - strandat 219.624 kb on + strandat 219.625 kb on - strandat 219.632 kb on + strandat 219.632 kb on + strandat 219.633 kb on - strandat 219.633 kb on - strandat 219.821 kb on + strand, within GFF3723at 219.821 kb on + strand, within GFF3723at 219.821 kb on + strand, within GFF3723at 219.821 kb on + strand, within GFF3723at 219.821 kb on + strand, within GFF3723at 219.821 kb on + strand, within GFF3723at 219.821 kb on + strand, within GFF3723at 219.821 kb on + strand, within GFF3723at 219.822 kb on - strand, within GFF3723at 219.822 kb on - strand, within GFF3723at 219.822 kb on - strand, within GFF3723at 219.822 kb on - strand, within GFF3723at 219.822 kb on - strand, within GFF3723at 219.921 kb on - strand, within GFF3723at 219.921 kb on - strand, within GFF3723at 219.921 kb on - strand, within GFF3723at 220.130 kb on + strand, within GFF3723at 220.131 kb on - strand, within GFF3723at 220.131 kb on - strand, within GFF3723at 220.187 kb on + strand, within GFF3723at 220.187 kb on + strand, within GFF3723at 220.187 kb on + strand, within GFF3723at 220.187 kb on + strand, within GFF3723at 220.187 kb on + strand, within GFF3723at 220.187 kb on + strand, within GFF3723at 220.187 kb on + strand, within GFF3723at 220.187 kb on + strand, within GFF3723at 220.187 kb on + strand, within GFF3723at 220.187 kb on + strand, within GFF3723at 220.188 kb on - strand, within GFF3723at 220.188 kb on - strand, within GFF3723at 220.188 kb on - strand, within GFF3723at 220.188 kb on - strand, within GFF3723at 220.188 kb on - strand, within GFF3723at 220.188 kb on - strand, within GFF3723at 220.188 kb on - strand, within GFF3723at 220.188 kb on - strand, within GFF3723at 220.301 kb on + strandat 220.301 kb on + strandat 220.302 kb on - strandat 220.302 kb on - strandat 220.376 kb on + strandat 220.377 kb on - strandat 220.377 kb on - strandat 220.377 kb on - strandat 220.377 kb on - strandat 220.378 kb on + strandat 220.379 kb on - strandat 220.379 kb on - strandat 220.379 kb on - strandat 220.379 kb on - strandat 220.379 kb on - strandat 220.412 kb on + strandat 220.412 kb on + strandat 220.412 kb on + strandat 220.412 kb on + strandat 220.412 kb on + strandat 220.412 kb on + strandat 220.412 kb on + strandat 220.412 kb on + strandat 220.412 kb on + strandat 220.413 kb on - strandat 220.413 kb on - strandat 220.413 kb on - strandat 220.418 kb on + strandat 220.494 kb on + strandat 220.494 kb on + strandat 220.494 kb on + strandat 220.495 kb on - strandat 220.495 kb on - strandat 220.495 kb on - strandat 220.495 kb on - strandat 220.495 kb on - strandat 220.750 kb on - strand, within GFF3724at 221.173 kb on - strand, within GFF3724at 221.214 kb on + strand, within GFF3724at 221.215 kb on - strand, within GFF3724

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL
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218,700 + GFF3721 0.69 +0.4
218,700 + GFF3721 0.69 +0.9
218,700 + GFF3721 0.69 -0.4
218,700 + GFF3721 0.69 -1.1
218,700 + GFF3721 0.69 -0.5
218,701 - GFF3721 0.69 -0.6
218,701 - GFF3721 0.69 -0.0
218,757 + GFF3721 0.75 -0.3
218,757 + GFF3721 0.75 +0.2
218,757 + GFF3721 0.75 +1.4
218,758 - GFF3721 0.75 +1.3
218,758 - GFF3721 0.75 +0.3
218,758 - GFF3721 0.75 -0.1
219,015 + +1.2
219,015 + -2.4
219,016 - +1.1
219,016 - +0.4
219,077 - +0.3
219,077 - +0.9
219,077 - -1.5
219,112 + GFF3722 0.16 +0.4
219,112 + GFF3722 0.16 -0.7
219,112 + GFF3722 0.16 +0.3
219,112 + GFF3722 0.16 -0.4
219,112 + GFF3722 0.16 -0.3
219,113 - GFF3722 0.16 -1.1
219,113 - GFF3722 0.16 +1.4
219,113 - GFF3722 0.16 +0.4
219,113 - GFF3722 0.16 -0.4
219,113 - GFF3722 0.16 -1.4
219,113 - GFF3722 0.16 -0.8
219,113 - GFF3722 0.16 -0.6
219,113 - GFF3722 0.16 -0.1
219,211 + GFF3722 0.34 -0.8
219,211 + GFF3722 0.34 +0.1
219,212 - GFF3722 0.34 +0.3
219,212 - GFF3722 0.34 +0.4
219,265 + GFF3722 0.43 +1.4
219,265 + GFF3722 0.43 -0.7
219,266 - GFF3722 0.43 +0.3
219,266 - GFF3722 0.43 -0.1
219,266 - GFF3722 0.43 +0.3
219,266 - GFF3722 0.43 -0.2
219,266 - GFF3722 0.43 +1.9
219,397 + GFF3722 0.67 +0.2
219,397 + GFF3722 0.67 -1.3
219,397 + GFF3722 0.67 -0.9
219,398 - GFF3722 0.67 +0.5
219,398 - GFF3722 0.67 -0.4
219,398 - GFF3722 0.67 +0.1
219,398 - GFF3722 0.67 -0.6
219,620 - -0.6
219,620 - +0.1
219,624 + -0.2
219,625 - -0.3
219,632 + -0.7
219,632 + -0.1
219,633 - +0.4
219,633 - -0.7
219,821 + GFF3723 0.28 -1.4
219,821 + GFF3723 0.28 -2.4
219,821 + GFF3723 0.28 +0.8
219,821 + GFF3723 0.28 -0.6
219,821 + GFF3723 0.28 -3.1
219,821 + GFF3723 0.28 -0.7
219,821 + GFF3723 0.28 +0.1
219,821 + GFF3723 0.28 -0.3
219,822 - GFF3723 0.28 -0.9
219,822 - GFF3723 0.28 -3.6
219,822 - GFF3723 0.28 -0.1
219,822 - GFF3723 0.28 -0.9
219,822 - GFF3723 0.28 -0.1
219,921 - GFF3723 0.42 -1.3
219,921 - GFF3723 0.42 -1.5
219,921 - GFF3723 0.42 +1.9
220,130 + GFF3723 0.72 -1.4
220,131 - GFF3723 0.72 -1.1
220,131 - GFF3723 0.72 -0.7
220,187 + GFF3723 0.81 -1.7
220,187 + GFF3723 0.81 -1.3
220,187 + GFF3723 0.81 -0.8
220,187 + GFF3723 0.81 -1.3
220,187 + GFF3723 0.81 -0.7
220,187 + GFF3723 0.81 -0.7
220,187 + GFF3723 0.81 -1.2
220,187 + GFF3723 0.81 -2.2
220,187 + GFF3723 0.81 -1.1
220,187 + GFF3723 0.81 +0.1
220,188 - GFF3723 0.81 -0.5
220,188 - GFF3723 0.81 -0.6
220,188 - GFF3723 0.81 -1.9
220,188 - GFF3723 0.81 -0.8
220,188 - GFF3723 0.81 -0.5
220,188 - GFF3723 0.81 -1.4
220,188 - GFF3723 0.81 -0.8
220,188 - GFF3723 0.81 -0.9
220,301 + +0.2
220,301 + -1.0
220,302 - -0.1
220,302 - -2.3
220,376 + -0.7
220,377 - -0.1
220,377 - -2.2
220,377 - -1.2
220,377 - +0.5
220,378 + -0.4
220,379 - -0.2
220,379 - -0.5
220,379 - -0.6
220,379 - +0.9
220,379 - -0.5
220,412 + -0.2
220,412 + -0.3
220,412 + -0.2
220,412 + -0.4
220,412 + -0.1
220,412 + +0.1
220,412 + -1.3
220,412 + -0.0
220,412 + -0.7
220,413 - -1.7
220,413 - -0.9
220,413 - +0.3
220,418 + +0.1
220,494 + -1.5
220,494 + -0.9
220,494 + +0.3
220,495 - -0.3
220,495 - -0.9
220,495 - -0.2
220,495 - -1.0
220,495 - -1.8
220,750 - GFF3724 0.21 -0.4
221,173 - GFF3724 0.51 +0.3
221,214 + GFF3724 0.54 -0.4
221,215 - GFF3724 0.54 -0.7

Or see this region's nucleotide sequence