Strain Fitness in Variovorax sp. SCN45 around GFF3633

Experiment: M9 with calcium pantothenate 10 mg/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9 with calcium pantothenate 10 mg/mL
144,272	+				+0.3
144,273	-				+0.7
144,300	+				+0.3
144,300	+				-1.4
144,300	+				-1.6
144,300	+				+0.6
144,300	+				-1.0
144,301	-				-0.1
144,301	-				+0.8
144,301	-				-0.7
144,301	-				-0.5
144,301	-				+0.1
144,301	-				-0.1
144,353	+				+0.2
144,353	+				-0.1
144,353	+				+0.3
144,353	+				+1.0
144,353	+				-1.3
144,353	+				-0.3
144,353	+				-2.4
144,354	-				-0.4
144,354	-				-0.3
144,354	-				-0.4
144,354	-				+0.0
144,385	+				+0.0
144,420	+				+0.3
144,420	+				-0.5
144,420	+				-0.8
144,420	+				+2.5
144,420	+				-2.4
144,420	+				-0.6
144,420	+				-0.3
144,420	+				-1.2
144,420	+				-0.2
144,420	+				-0.3
144,420	+				-0.3
144,420	+				+0.1
144,420	+				-1.2
144,420	+				-0.4
144,420	+				+0.4
144,420	+				-0.3
144,420	+				+0.0
144,420	+				+1.1
144,420	+				+0.8
144,420	+				+0.0
144,420	+				-0.5
144,420	+				-0.1
144,420	+				+0.8
144,420	+				-0.6
144,420	+				-0.3
144,420	+				+0.2
144,421	-				-0.7
144,421	-				-1.1
144,421	-				+0.2
144,421	-				-0.1
144,421	-				+1.6
144,421	-				-1.1
144,421	-				-0.4
144,421	-				+0.9
144,421	-				-0.3
144,421	-				-2.7
144,421	-				+0.0
144,421	-				-0.2
144,421	-				+0.1
144,421	-				+0.1
144,421	-				-1.3
144,421	-				-0.8
144,421	-				+0.6
144,421	-				-0.1
144,421	-				+0.3
144,421	-				-0.7
144,421	-				+0.3
144,421	-				+0.3
144,421	-				-1.0
144,421	-				-0.4
144,421	-				-1.1
144,583	+		GFF3633	0.10	+0.1
144,583	+		GFF3633	0.10	-1.0
144,583	+		GFF3633	0.10	-1.6
144,583	+		GFF3633	0.10	-0.8
144,583	+		GFF3633	0.10	-0.1
144,583	+		GFF3633	0.10	-0.2
144,583	+		GFF3633	0.10	+0.3
144,583	+		GFF3633	0.10	-0.9
144,583	+		GFF3633	0.10	-0.5
144,584	-		GFF3633	0.10	-2.7
144,584	-		GFF3633	0.10	-0.3
144,584	-		GFF3633	0.10	-0.5
144,584	-		GFF3633	0.10	-0.3
144,584	-		GFF3633	0.10	+0.2
144,584	-		GFF3633	0.10	-0.1
144,584	-		GFF3633	0.10	-0.4
144,584	-		GFF3633	0.10	-0.8
144,584	-		GFF3633	0.10	+0.1
144,584	-		GFF3633	0.10	-1.2
144,584	-		GFF3633	0.10	+0.7
144,584	-		GFF3633	0.10	+1.9
144,584	-		GFF3633	0.10	-0.3
144,584	-		GFF3633	0.10	-0.7
144,584	-		GFF3633	0.10	+0.3
144,584	-		GFF3633	0.10	-0.7
144,585	-		GFF3633	0.10	-1.4
144,619	+		GFF3633	0.12	+0.7
144,619	+		GFF3633	0.12	-0.4
144,619	+		GFF3633	0.12	+0.4
144,619	+		GFF3633	0.12	-0.2
144,619	+		GFF3633	0.12	-1.3
144,619	+		GFF3633	0.12	-1.1
144,619	+		GFF3633	0.12	-0.5
144,619	+		GFF3633	0.12	+0.0
144,619	+		GFF3633	0.12	+1.1
144,619	+		GFF3633	0.12	+0.2
144,619	+		GFF3633	0.12	+0.3
144,619	+		GFF3633	0.12	-0.3
144,619	+		GFF3633	0.12	+1.9
144,619	+		GFF3633	0.12	-1.2
144,620	-		GFF3633	0.12	+1.9
144,620	-		GFF3633	0.12	+0.1
144,620	-		GFF3633	0.12	+0.9
144,620	-		GFF3633	0.12	-0.1
144,620	-		GFF3633	0.12	-0.1
144,620	-		GFF3633	0.12	-0.1
144,620	-		GFF3633	0.12	-0.1
144,620	-		GFF3633	0.12	-0.6
144,620	-		GFF3633	0.12	+1.2
144,620	-		GFF3633	0.12	-1.8
144,620	-		GFF3633	0.12	-0.6
144,620	-		GFF3633	0.12	-0.3
144,620	-		GFF3633	0.12	-0.4
144,620	-		GFF3633	0.12	-0.8
144,620	-		GFF3633	0.12	-0.5
144,644	+		GFF3633	0.14	-0.2
144,644	+		GFF3633	0.14	-1.5
144,644	+		GFF3633	0.14	-0.2
144,645	-		GFF3633	0.14	-0.3
144,724	+		GFF3633	0.19	+2.5
144,725	-		GFF3633	0.19	-1.2
144,725	-		GFF3633	0.19	-0.1
144,725	-		GFF3633	0.19	-1.8
144,725	-		GFF3633	0.19	-0.9
144,847	+		GFF3633	0.27	-0.6
144,847	+		GFF3633	0.27	-0.4
144,847	+		GFF3633	0.27	-0.2
144,847	+		GFF3633	0.27	-0.6
144,847	+		GFF3633	0.27	-1.3
144,847	+		GFF3633	0.27	+0.1
144,847	+		GFF3633	0.27	-0.6
144,847	+		GFF3633	0.27	-0.4
144,847	+		GFF3633	0.27	+0.2
144,847	+		GFF3633	0.27	-0.9
144,847	+		GFF3633	0.27	+0.0
144,847	+		GFF3633	0.27	+0.0
144,848	-		GFF3633	0.27	+0.7
144,848	-		GFF3633	0.27	-0.2
144,848	-		GFF3633	0.27	-0.3
144,848	-		GFF3633	0.27	+1.1
144,848	-		GFF3633	0.27	-1.2
144,848	-		GFF3633	0.27	-0.2
144,848	-		GFF3633	0.27	-1.0
144,848	-		GFF3633	0.27	-0.2
144,848	-		GFF3633	0.27	-2.5
144,848	-		GFF3633	0.27	-0.4
144,848	-		GFF3633	0.27	+1.4
144,848	-		GFF3633	0.27	-0.9
144,848	-		GFF3633	0.27	-1.9
144,848	-		GFF3633	0.27	+0.3
144,848	-		GFF3633	0.27	+1.8
144,848	-		GFF3633	0.27	+0.7
144,934	+		GFF3633	0.32	-0.8
144,934	+		GFF3633	0.32	-0.4
144,934	+		GFF3633	0.32	-0.1
144,934	+		GFF3633	0.32	-0.0
144,934	+		GFF3633	0.32	-0.7
144,934	+		GFF3633	0.32	+0.2
144,934	+		GFF3633	0.32	-1.0
144,934	+		GFF3633	0.32	-0.4
144,934	+		GFF3633	0.32	+0.5
144,934	+		GFF3633	0.32	-0.5
144,934	+		GFF3633	0.32	-0.3
144,934	+		GFF3633	0.32	+0.4
144,934	+		GFF3633	0.32	-0.7
144,934	+		GFF3633	0.32	-0.3
144,935	-		GFF3633	0.32	-1.5
144,935	-		GFF3633	0.32	-1.0
144,935	-		GFF3633	0.32	-0.5
144,935	-		GFF3633	0.32	-1.3
144,935	-		GFF3633	0.32	+1.6
144,935	-		GFF3633	0.32	+0.3
144,935	-		GFF3633	0.32	+0.6
144,935	-		GFF3633	0.32	-1.6
144,935	-		GFF3633	0.32	+0.7
144,935	-		GFF3633	0.32	+0.0
144,982	+		GFF3633	0.35	-0.6
144,982	+		GFF3633	0.35	-0.4
144,982	+		GFF3633	0.35	-0.1
144,982	+		GFF3633	0.35	-0.6
144,982	+		GFF3633	0.35	-1.2
144,982	+		GFF3633	0.35	-0.2
144,982	+		GFF3633	0.35	-0.5
144,982	+		GFF3633	0.35	+0.5
144,982	+		GFF3633	0.35	-0.8
144,982	+		GFF3633	0.35	-1.1
144,983	-		GFF3633	0.35	-0.3
144,983	-		GFF3633	0.35	-1.2
144,983	-		GFF3633	0.35	+0.2
144,983	-		GFF3633	0.35	+0.2
144,983	-		GFF3633	0.35	+0.3
144,983	-		GFF3633	0.35	-0.4
144,983	-		GFF3633	0.35	-1.7
145,045	+		GFF3633	0.39	+0.5
145,045	+		GFF3633	0.39	-0.8
145,045	+		GFF3633	0.39	+0.2
145,045	+		GFF3633	0.39	+0.1
145,045	+		GFF3633	0.39	-0.2
145,046	-		GFF3633	0.39	-0.4
145,046	-		GFF3633	0.39	-1.1
145,108	+		GFF3633	0.43	+0.3
145,108	+		GFF3633	0.43	-0.5
145,108	+		GFF3633	0.43	+1.0
145,108	+		GFF3633	0.43	-1.2
145,108	+		GFF3633	0.43	-0.4
145,108	+		GFF3633	0.43	+0.0
145,108	+		GFF3633	0.43	+0.8
145,108	+		GFF3633	0.43	-0.2
145,108	+		GFF3633	0.43	-0.9
145,108	+		GFF3633	0.43	-0.2
145,109	-		GFF3633	0.43	-0.7
145,109	-		GFF3633	0.43	-0.6
145,109	-		GFF3633	0.43	+0.1
145,109	-		GFF3633	0.43	+0.3
145,109	-		GFF3633	0.43	-0.8
145,109	-		GFF3633	0.43	-1.4
145,109	-		GFF3633	0.43	-0.1
145,109	-		GFF3633	0.43	-0.3
145,109	-		GFF3633	0.43	+0.4
145,141	+		GFF3633	0.45	+0.3
145,141	+		GFF3633	0.45	-0.0
145,141	+		GFF3633	0.45	-0.1
145,141	+		GFF3633	0.45	+0.2
145,141	+		GFF3633	0.45	-0.5
145,141	+		GFF3633	0.45	-0.3
145,141	+		GFF3633	0.45	-0.6
145,141	+		GFF3633	0.45	-0.5
145,141	+		GFF3633	0.45	-0.0
145,141	+		GFF3633	0.45	+0.3
145,141	+		GFF3633	0.45	-0.1
145,141	+		GFF3633	0.45	-0.4
145,142	-		GFF3633	0.45	-0.1
145,142	-		GFF3633	0.45	-0.9
145,142	-		GFF3633	0.45	-0.3
145,142	-		GFF3633	0.45	-0.3
145,142	-		GFF3633	0.45	-0.4
145,142	-		GFF3633	0.45	-0.7
145,142	-		GFF3633	0.45	-0.4
145,142	-		GFF3633	0.45	-0.9
145,142	-		GFF3633	0.45	-0.7
145,142	-		GFF3633	0.45	-0.2
145,142	-		GFF3633	0.45	-1.4
145,142	-		GFF3633	0.45	+0.1
145,142	-		GFF3633	0.45	-0.0
145,142	-		GFF3633	0.45	+0.7
145,213	+		GFF3633	0.49	+0.0
145,213	+		GFF3633	0.49	-0.3
145,213	+		GFF3633	0.49	-0.6
145,213	+		GFF3633	0.49	+0.4
145,213	+		GFF3633	0.49	-0.4
145,213	+		GFF3633	0.49	-0.8
145,213	+		GFF3633	0.49	-0.7
145,213	+		GFF3633	0.49	+1.0
145,214	-		GFF3633	0.49	-0.4
145,214	-		GFF3633	0.49	+0.3
145,214	-		GFF3633	0.49	+0.5
145,214	-		GFF3633	0.49	-0.4
145,214	-		GFF3633	0.49	+0.1
145,214	-		GFF3633	0.49	+0.0
145,214	-		GFF3633	0.49	-0.3
145,214	-		GFF3633	0.49	-0.5
145,214	-		GFF3633	0.49	-0.3
145,216	+		GFF3633	0.50	-0.1
145,216	+		GFF3633	0.50	+0.0
145,216	+		GFF3633	0.50	-0.0
145,216	+		GFF3633	0.50	+0.4
145,216	+		GFF3633	0.50	-0.1
145,216	+		GFF3633	0.50	-0.8
145,216	+		GFF3633	0.50	-0.3
145,216	+		GFF3633	0.50	-0.0
145,216	+		GFF3633	0.50	-0.5
145,216	+		GFF3633	0.50	-0.6
145,216	+		GFF3633	0.50	-0.2
145,217	-		GFF3633	0.50	-1.5
145,217	-		GFF3633	0.50	-0.6
145,217	-		GFF3633	0.50	-1.3
145,217	-		GFF3633	0.50	-0.2
145,217	-		GFF3633	0.50	+0.3
145,217	-		GFF3633	0.50	-0.4
145,217	-		GFF3633	0.50	+0.1
145,217	-		GFF3633	0.50	+0.0
145,217	-		GFF3633	0.50	-0.3
145,217	-		GFF3633	0.50	+0.1
145,217	-		GFF3633	0.50	+0.1
145,217	-		GFF3633	0.50	-0.0
145,348	+		GFF3633	0.58	+0.2
145,348	+		GFF3633	0.58	-0.3
145,348	+		GFF3633	0.58	-0.2
145,348	+		GFF3633	0.58	-1.0
145,348	+		GFF3633	0.58	-0.2
145,348	+		GFF3633	0.58	+0.9
145,348	+		GFF3633	0.58	-0.9
145,348	+		GFF3633	0.58	+0.2
145,348	+		GFF3633	0.58	+0.3
145,348	+		GFF3633	0.58	-0.5
145,348	+		GFF3633	0.58	-0.1
145,348	+		GFF3633	0.58	+0.4
145,348	+		GFF3633	0.58	-1.0
145,348	+		GFF3633	0.58	-1.0
145,349	-		GFF3633	0.58	-0.3
145,349	-		GFF3633	0.58	+0.0
145,349	-		GFF3633	0.58	-0.8
145,349	-		GFF3633	0.58	-0.4
145,349	-		GFF3633	0.58	+0.2
145,349	-		GFF3633	0.58	-0.6
145,349	-		GFF3633	0.58	-0.3
145,349	-		GFF3633	0.58	-0.7
145,349	-		GFF3633	0.58	+0.7
145,349	-		GFF3633	0.58	-0.3
145,349	-		GFF3633	0.58	-1.3
145,349	-		GFF3633	0.58	-1.1
145,349	-		GFF3633	0.58	-0.8
145,388	+		GFF3633	0.60	-0.5
145,388	+		GFF3633	0.60	-0.5
145,388	+		GFF3633	0.60	-0.0
145,388	+		GFF3633	0.60	-0.7
145,389	-		GFF3633	0.60	+0.3
145,432	+		GFF3633	0.63	+0.4
145,433	-		GFF3633	0.63	-0.6
145,649	-		GFF3633	0.77	-1.3
145,649	-		GFF3633	0.77	-0.4
145,714	+		GFF3633	0.81	+1.0
145,714	+		GFF3633	0.81	-0.2
145,714	+		GFF3633	0.81	+0.0
145,714	+		GFF3633	0.81	-0.7
145,714	+		GFF3633	0.81	+1.5
145,714	+		GFF3633	0.81	-0.3
145,714	+		GFF3633	0.81	+0.7
145,714	+		GFF3633	0.81	-0.2
145,715	-		GFF3633	0.81	+0.7
145,715	-		GFF3633	0.81	-0.4
145,715	-		GFF3633	0.81	-0.4
145,715	-		GFF3633	0.81	-0.6
145,715	-		GFF3633	0.81	+0.4
145,715	-		GFF3633	0.81	+0.0
145,715	-		GFF3633	0.81	+0.3
145,715	-		GFF3633	0.81	-0.3
145,715	-		GFF3633	0.81	-0.7
145,797	+		GFF3633	0.86	-0.5
145,797	+		GFF3633	0.86	+0.6
145,797	+		GFF3633	0.86	-1.9
145,798	-		GFF3633	0.86	+0.1
145,804	+		GFF3633	0.86	-1.2
145,804	+		GFF3633	0.86	-0.9
145,804	+		GFF3633	0.86	-0.2
145,804	+		GFF3633	0.86	+0.7
145,804	+		GFF3633	0.86	+0.1
145,804	+		GFF3633	0.86	+0.1
145,804	+		GFF3633	0.86	-0.3
145,804	+		GFF3633	0.86	-0.4
145,805	-		GFF3633	0.86	-0.9
145,805	-		GFF3633	0.86	-0.5
145,808	+		GFF3633	0.86	+0.1
145,837	+		GFF3633	0.88	+1.9
145,837	+		GFF3633	0.88	-0.1
145,837	+		GFF3633	0.88	+0.3
145,837	+		GFF3633	0.88	-0.0
145,837	+		GFF3633	0.88	-0.6
145,837	+		GFF3633	0.88	+0.0
145,838	-		GFF3633	0.88	-0.0
145,838	-		GFF3633	0.88	+0.3
145,838	-		GFF3633	0.88	-0.1
145,914	+				-0.1
145,914	+				-0.0
145,914	+				-0.4
145,942	+				+0.3
145,942	+				-0.9
145,942	+				-0.7
145,942	+				-0.6
145,942	+				+1.3
145,943	-				+0.7
145,943	-				+0.2
145,943	-				-0.8
145,943	-				-1.1
145,943	-				-1.0
145,943	-				+0.3
145,943	-				-1.7
145,943	-				-0.5
145,943	-				+0.5
145,943	-				-0.1
145,943	-				+0.6
145,943	-				+1.1
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