Strain Fitness in Variovorax sp. SCN45 around GFF3201

Experiment: M9 with calcium pantothenate 10 mg/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9 with calcium pantothenate 10 mg/mL
19,490	-		GFF3200	0.64	-0.6
19,587	+		GFF3200	0.68	-0.8
19,587	+		GFF3200	0.68	-0.0
19,587	+		GFF3200	0.68	-1.2
19,588	-		GFF3200	0.68	-0.2
19,618	-		GFF3200	0.69	-0.3
19,731	+		GFF3200	0.74	-0.8
19,731	+		GFF3200	0.74	+0.3
19,731	+		GFF3200	0.74	-0.1
19,761	-		GFF3200	0.75	-0.9
19,780	-		GFF3200	0.76	-2.5
19,889	+		GFF3200	0.80	+0.6
19,889	+		GFF3200	0.80	+1.0
19,890	-		GFF3200	0.80	-0.7
19,896	+		GFF3200	0.80	-1.6
19,925	-		GFF3200	0.82	-1.3
19,994	-		GFF3200	0.84	+0.5
20,098	-		GFF3200	0.89	-0.8
20,098	-		GFF3200	0.89	+0.4
20,332	+				-1.1
20,339	+				+0.7
20,378	-				-0.3
20,389	+				+0.5
20,390	-				-0.1
20,661	-		GFF3201	0.28	-0.7
20,744	+		GFF3201	0.36	+0.3
20,769	+		GFF3201	0.38	-1.1
20,770	-		GFF3201	0.39	+0.3
20,837	+		GFF3201	0.45	+0.8
20,887	+		GFF3201	0.50	-1.0
20,887	+		GFF3201	0.50	-1.1
20,887	+		GFF3201	0.50	-0.1
20,888	-		GFF3201	0.50	+1.3
20,888	-		GFF3201	0.50	-0.1
20,980	+		GFF3201	0.59	-0.4
20,981	-		GFF3201	0.60	+0.3
20,981	-		GFF3201	0.60	-0.6
20,988	+		GFF3201	0.60	-0.2
21,019	+		GFF3201	0.63	-0.1
21,020	-		GFF3201	0.63	-0.3
21,154	-		GFF3201	0.77	-0.9
21,154	-		GFF3201	0.77	+1.5
21,154	-		GFF3201	0.77	-0.7
21,219	+		GFF3201	0.83	+0.0
21,220	-		GFF3201	0.83	-0.3
21,247	+		GFF3201	0.86	-0.7
21,248	-		GFF3201	0.86	-0.0
21,256	+		GFF3201	0.87	-0.3
21,256	+		GFF3201	0.87	-1.9
21,292	+				-0.2
21,292	+				-1.1
21,372	-				-0.4
21,380	+				-0.4
21,385	+				+0.0
21,385	+				+0.6
21,386	-				-0.6
21,386	-				-0.2
21,386	-				-0.5
21,386	-				-0.8
21,386	-				+0.0
21,386	-				-0.4
21,389	+				-0.5
21,389	+				-1.1
21,390	-				+0.2
21,642	+				+0.4
21,642	+				-2.1
21,643	-				-0.1
21,644	+				-0.5
21,644	+				-1.6
21,644	+				-0.3
21,644	+				-0.7
21,644	+				-0.6
21,644	+				+1.5
21,645	-				+1.1
21,645	-				-2.0
21,645	-				+0.3
21,645	-				-0.2
21,645	-				-0.4
21,645	-				-0.4
21,645	-				-0.2
21,645	-				-1.3
21,648	+				-2.4
21,648	+				-0.4
21,648	+				-1.1
21,648	+				+0.3
21,648	+				+0.5
21,648	+				+0.0
21,648	+				-0.7
21,648	+				-0.7
21,649	-				-1.9
21,649	-				-0.5
21,777	+		GFF3202	0.21	+2.3
21,984	+		GFF3202	0.66	+1.1
22,070	+		GFF3202	0.84	-0.6
22,070	+		GFF3202	0.84	+0.7
22,089	+		GFF3202	0.88	-0.6
22,090	-		GFF3202	0.88	+1.1
22,090	-		GFF3202	0.88	-0.2
22,090	-		GFF3202	0.88	-0.1
22,207	+				-0.7
22,208	-				-2.1
22,208	-				+0.2
22,227	+				-0.3
22,351	-				+0.3
22,351	-				-0.2
22,387	-				-0.8