Strain Fitness in Variovorax sp. SCN45 around GFF2980

Experiment: M9 with calcium pantothenate 10 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2978 and GFF2979 are separated by 0 nucleotidesGFF2979 and GFF2980 are separated by 81 nucleotidesGFF2980 and GFF2981 are separated by 357 nucleotides GFF2978 - Aromatic ring-cleaving dioxygenase, at 409,250 to 409,597 GFF2978 GFF2979 - Glutathione S-transferase (EC 2.5.1.18), at 409,598 to 410,254 GFF2979 GFF2980 - Intracellular PHB depolymerase PhaZ2, at 410,336 to 411,556 GFF2980 GFF2981 - no description, at 411,914 to 412,807 GFF2981 Position (kb) 410 411 412Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 409.595 kb on + strandat 409.599 kb on + strandat 409.599 kb on + strandat 409.599 kb on + strandat 409.599 kb on + strandat 409.600 kb on - strandat 409.600 kb on - strandat 409.600 kb on - strandat 409.695 kb on + strand, within GFF2979at 409.728 kb on + strand, within GFF2979at 409.729 kb on - strand, within GFF2979at 409.729 kb on - strand, within GFF2979at 409.758 kb on + strand, within GFF2979at 409.758 kb on + strand, within GFF2979at 409.758 kb on + strand, within GFF2979at 409.759 kb on - strand, within GFF2979at 409.759 kb on - strand, within GFF2979at 409.809 kb on + strand, within GFF2979at 409.809 kb on + strand, within GFF2979at 409.810 kb on - strand, within GFF2979at 409.810 kb on - strand, within GFF2979at 410.031 kb on + strand, within GFF2979at 410.217 kb on + strandat 410.217 kb on + strandat 410.217 kb on + strandat 410.218 kb on - strandat 410.218 kb on - strandat 410.351 kb on + strandat 410.399 kb on + strandat 410.399 kb on + strandat 410.399 kb on + strandat 410.399 kb on + strandat 410.400 kb on - strandat 410.400 kb on - strandat 410.717 kb on + strand, within GFF2980at 410.717 kb on + strand, within GFF2980at 410.783 kb on + strand, within GFF2980at 410.783 kb on + strand, within GFF2980at 410.784 kb on - strand, within GFF2980at 411.140 kb on + strand, within GFF2980at 411.140 kb on + strand, within GFF2980at 411.140 kb on + strand, within GFF2980at 411.140 kb on + strand, within GFF2980at 411.140 kb on + strand, within GFF2980at 411.140 kb on + strand, within GFF2980at 411.140 kb on + strand, within GFF2980at 411.140 kb on + strand, within GFF2980at 411.140 kb on + strand, within GFF2980at 411.140 kb on + strand, within GFF2980at 411.140 kb on + strand, within GFF2980at 411.140 kb on + strand, within GFF2980at 411.140 kb on + strand, within GFF2980at 411.140 kb on + strand, within GFF2980at 411.140 kb on + strand, within GFF2980at 411.140 kb on + strand, within GFF2980at 411.140 kb on + strand, within GFF2980at 411.140 kb on + strand, within GFF2980at 411.140 kb on + strand, within GFF2980at 411.140 kb on + strand, within GFF2980at 411.140 kb on + strand, within GFF2980at 411.140 kb on + strand, within GFF2980at 411.141 kb on - strand, within GFF2980at 411.141 kb on - strand, within GFF2980at 411.141 kb on - strand, within GFF2980at 411.141 kb on - strand, within GFF2980at 411.141 kb on - strand, within GFF2980at 411.141 kb on - strand, within GFF2980at 411.141 kb on - strand, within GFF2980at 411.141 kb on - strand, within GFF2980at 411.141 kb on - strand, within GFF2980at 411.141 kb on - strand, within GFF2980at 411.141 kb on - strand, within GFF2980at 411.141 kb on - strand, within GFF2980at 411.141 kb on - strand, within GFF2980at 411.141 kb on - strand, within GFF2980at 411.141 kb on - strand, within GFF2980at 411.141 kb on - strand, within GFF2980at 411.141 kb on - strand, within GFF2980at 411.141 kb on - strand, within GFF2980at 411.141 kb on - strand, within GFF2980at 411.141 kb on - strand, within GFF2980at 411.141 kb on - strand, within GFF2980at 411.141 kb on - strand, within GFF2980at 411.141 kb on - strand, within GFF2980at 411.141 kb on - strand, within GFF2980at 411.141 kb on - strand, within GFF2980at 411.141 kb on - strand, within GFF2980at 411.141 kb on - strand, within GFF2980at 411.141 kb on - strand, within GFF2980at 411.141 kb on - strand, within GFF2980at 411.194 kb on + strand, within GFF2980at 411.195 kb on - strand, within GFF2980at 411.195 kb on - strand, within GFF2980at 411.195 kb on - strand, within GFF2980at 411.195 kb on - strand, within GFF2980at 411.203 kb on + strand, within GFF2980at 411.203 kb on + strand, within GFF2980at 411.204 kb on - strand, within GFF2980at 411.204 kb on - strand, within GFF2980at 411.236 kb on + strand, within GFF2980at 411.236 kb on + strand, within GFF2980at 411.236 kb on + strand, within GFF2980at 411.237 kb on - strand, within GFF2980at 411.237 kb on - strand, within GFF2980at 411.269 kb on + strand, within GFF2980at 411.270 kb on - strand, within GFF2980at 411.270 kb on - strand, within GFF2980at 411.429 kb on - strand, within GFF2980at 411.467 kb on + strandat 411.467 kb on + strandat 411.506 kb on + strandat 411.507 kb on - strandat 411.507 kb on - strandat 411.507 kb on - strandat 411.629 kb on + strandat 411.630 kb on - strandat 411.630 kb on - strandat 412.025 kb on + strand, within GFF2981at 412.025 kb on + strand, within GFF2981at 412.025 kb on + strand, within GFF2981at 412.025 kb on + strand, within GFF2981at 412.025 kb on + strand, within GFF2981at 412.026 kb on - strand, within GFF2981at 412.026 kb on - strand, within GFF2981at 412.026 kb on - strand, within GFF2981at 412.026 kb on - strand, within GFF2981at 412.026 kb on - strand, within GFF2981at 412.026 kb on - strand, within GFF2981at 412.026 kb on - strand, within GFF2981at 412.026 kb on - strand, within GFF2981

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL
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409,595 + +0.4
409,599 + -0.9
409,599 + +0.1
409,599 + +0.1
409,599 + -0.7
409,600 - +1.0
409,600 - -0.6
409,600 - +0.1
409,695 + GFF2979 0.15 -0.3
409,728 + GFF2979 0.20 -1.2
409,729 - GFF2979 0.20 -0.8
409,729 - GFF2979 0.20 -1.2
409,758 + GFF2979 0.24 -0.5
409,758 + GFF2979 0.24 -0.9
409,758 + GFF2979 0.24 -0.7
409,759 - GFF2979 0.25 -1.6
409,759 - GFF2979 0.25 +0.3
409,809 + GFF2979 0.32 +1.4
409,809 + GFF2979 0.32 -0.3
409,810 - GFF2979 0.32 +0.2
409,810 - GFF2979 0.32 +0.7
410,031 + GFF2979 0.66 +1.1
410,217 + -0.6
410,217 + +0.2
410,217 + +0.7
410,218 - -1.2
410,218 - +0.6
410,351 + -2.7
410,399 + -0.3
410,399 + -0.1
410,399 + -0.9
410,399 + +0.7
410,400 - -1.3
410,400 - +0.2
410,717 + GFF2980 0.31 -0.4
410,717 + GFF2980 0.31 +2.2
410,783 + GFF2980 0.37 +0.7
410,783 + GFF2980 0.37 +0.7
410,784 - GFF2980 0.37 -0.0
411,140 + GFF2980 0.66 +0.3
411,140 + GFF2980 0.66 -0.4
411,140 + GFF2980 0.66 -0.5
411,140 + GFF2980 0.66 -0.6
411,140 + GFF2980 0.66 -0.5
411,140 + GFF2980 0.66 +0.1
411,140 + GFF2980 0.66 -0.7
411,140 + GFF2980 0.66 -0.3
411,140 + GFF2980 0.66 -0.5
411,140 + GFF2980 0.66 +0.1
411,140 + GFF2980 0.66 +0.2
411,140 + GFF2980 0.66 +0.0
411,140 + GFF2980 0.66 +0.7
411,140 + GFF2980 0.66 -1.2
411,140 + GFF2980 0.66 -1.7
411,140 + GFF2980 0.66 -0.9
411,140 + GFF2980 0.66 +0.4
411,140 + GFF2980 0.66 -1.5
411,140 + GFF2980 0.66 -0.8
411,140 + GFF2980 0.66 +0.0
411,140 + GFF2980 0.66 -0.0
411,140 + GFF2980 0.66 -0.3
411,141 - GFF2980 0.66 -0.1
411,141 - GFF2980 0.66 -0.8
411,141 - GFF2980 0.66 -3.0
411,141 - GFF2980 0.66 -1.2
411,141 - GFF2980 0.66 +0.4
411,141 - GFF2980 0.66 -1.6
411,141 - GFF2980 0.66 +0.5
411,141 - GFF2980 0.66 +0.3
411,141 - GFF2980 0.66 -1.1
411,141 - GFF2980 0.66 +0.1
411,141 - GFF2980 0.66 +0.7
411,141 - GFF2980 0.66 -0.7
411,141 - GFF2980 0.66 -0.6
411,141 - GFF2980 0.66 +1.3
411,141 - GFF2980 0.66 +0.2
411,141 - GFF2980 0.66 +0.4
411,141 - GFF2980 0.66 -0.1
411,141 - GFF2980 0.66 +0.9
411,141 - GFF2980 0.66 -0.1
411,141 - GFF2980 0.66 -0.3
411,141 - GFF2980 0.66 +0.2
411,141 - GFF2980 0.66 +2.2
411,141 - GFF2980 0.66 +0.2
411,141 - GFF2980 0.66 -0.7
411,141 - GFF2980 0.66 -0.4
411,141 - GFF2980 0.66 +0.7
411,141 - GFF2980 0.66 +0.2
411,141 - GFF2980 0.66 +0.2
411,141 - GFF2980 0.66 -0.5
411,194 + GFF2980 0.70 +0.5
411,195 - GFF2980 0.70 +1.1
411,195 - GFF2980 0.70 -0.8
411,195 - GFF2980 0.70 -0.1
411,195 - GFF2980 0.70 +0.6
411,203 + GFF2980 0.71 +0.7
411,203 + GFF2980 0.71 +0.7
411,204 - GFF2980 0.71 -0.2
411,204 - GFF2980 0.71 +0.1
411,236 + GFF2980 0.74 +0.8
411,236 + GFF2980 0.74 -0.6
411,236 + GFF2980 0.74 +1.5
411,237 - GFF2980 0.74 -0.1
411,237 - GFF2980 0.74 -0.2
411,269 + GFF2980 0.76 +0.3
411,270 - GFF2980 0.76 -0.1
411,270 - GFF2980 0.76 +0.9
411,429 - GFF2980 0.90 -1.8
411,467 + -0.1
411,467 + +1.3
411,506 + -1.2
411,507 - +0.2
411,507 - +1.7
411,507 - +0.1
411,629 + -0.0
411,630 - -0.2
411,630 - -0.6
412,025 + GFF2981 0.12 -0.3
412,025 + GFF2981 0.12 -1.5
412,025 + GFF2981 0.12 -0.3
412,025 + GFF2981 0.12 -1.5
412,025 + GFF2981 0.12 -2.4
412,026 - GFF2981 0.13 +1.2
412,026 - GFF2981 0.13 -0.2
412,026 - GFF2981 0.13 -0.6
412,026 - GFF2981 0.13 -0.6
412,026 - GFF2981 0.13 +0.8
412,026 - GFF2981 0.13 -0.2
412,026 - GFF2981 0.13 +0.5
412,026 - GFF2981 0.13 +0.8

Or see this region's nucleotide sequence