Strain Fitness in Variovorax sp. SCN45 around GFF2772

Experiment: M9 with calcium pantothenate 10 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2771 and GFF2772 are separated by 41 nucleotidesGFF2772 and GFF2773 are separated by 74 nucleotides GFF2771 - BUG/TctC family periplasmic protein, at 200,999 to 201,970 GFF2771 GFF2772 - Site-specific tyrosine recombinase XerD, at 202,012 to 202,923 GFF2772 GFF2773 - BUG/TctC family periplasmic protein, at 202,998 to 203,972 GFF2773 Position (kb) 202 203Strain fitness (log2 ratio) -2 -1 0 1at 201.420 kb on + strand, within GFF2771at 201.420 kb on + strand, within GFF2771at 201.421 kb on - strand, within GFF2771at 201.421 kb on - strand, within GFF2771at 201.592 kb on + strand, within GFF2771at 201.593 kb on - strand, within GFF2771at 201.593 kb on - strand, within GFF2771at 201.594 kb on + strand, within GFF2771at 201.594 kb on + strand, within GFF2771at 201.594 kb on + strand, within GFF2771at 201.594 kb on + strand, within GFF2771at 201.594 kb on + strand, within GFF2771at 201.594 kb on + strand, within GFF2771at 201.594 kb on + strand, within GFF2771at 201.594 kb on + strand, within GFF2771at 201.594 kb on + strand, within GFF2771at 201.595 kb on - strand, within GFF2771at 201.595 kb on - strand, within GFF2771at 201.595 kb on - strand, within GFF2771at 201.595 kb on - strand, within GFF2771at 201.595 kb on - strand, within GFF2771at 201.595 kb on - strand, within GFF2771at 201.595 kb on - strand, within GFF2771at 201.595 kb on - strand, within GFF2771at 201.595 kb on - strand, within GFF2771at 201.595 kb on - strand, within GFF2771at 201.621 kb on + strand, within GFF2771at 201.621 kb on + strand, within GFF2771at 201.621 kb on + strand, within GFF2771at 201.622 kb on - strand, within GFF2771at 201.622 kb on - strand, within GFF2771at 201.622 kb on - strand, within GFF2771at 201.622 kb on - strand, within GFF2771at 201.622 kb on - strand, within GFF2771at 201.622 kb on - strand, within GFF2771at 201.645 kb on + strand, within GFF2771at 201.645 kb on + strand, within GFF2771at 201.646 kb on - strand, within GFF2771at 201.646 kb on - strand, within GFF2771at 201.666 kb on + strand, within GFF2771at 201.666 kb on + strand, within GFF2771at 201.667 kb on - strand, within GFF2771at 201.711 kb on + strand, within GFF2771at 201.712 kb on - strand, within GFF2771at 201.774 kb on + strand, within GFF2771at 201.774 kb on + strand, within GFF2771at 201.774 kb on + strand, within GFF2771at 201.775 kb on - strand, within GFF2771at 202.073 kb on + strandat 202.073 kb on + strandat 202.073 kb on + strandat 202.073 kb on + strandat 202.073 kb on + strandat 202.073 kb on + strandat 202.074 kb on - strandat 202.074 kb on - strandat 202.074 kb on - strandat 202.074 kb on - strandat 202.074 kb on - strandat 202.074 kb on - strandat 202.074 kb on - strandat 202.331 kb on + strand, within GFF2772at 202.478 kb on + strand, within GFF2772at 202.479 kb on - strand, within GFF2772at 202.479 kb on - strand, within GFF2772at 202.479 kb on - strand, within GFF2772at 202.661 kb on + strand, within GFF2772at 202.661 kb on + strand, within GFF2772at 202.661 kb on + strand, within GFF2772at 202.661 kb on + strand, within GFF2772at 202.662 kb on - strand, within GFF2772at 202.662 kb on - strand, within GFF2772at 202.733 kb on + strand, within GFF2772at 202.733 kb on + strand, within GFF2772at 202.733 kb on + strand, within GFF2772at 202.733 kb on + strand, within GFF2772at 202.733 kb on + strand, within GFF2772at 202.733 kb on + strand, within GFF2772at 202.733 kb on + strand, within GFF2772at 202.733 kb on + strand, within GFF2772at 202.733 kb on + strand, within GFF2772at 202.734 kb on - strand, within GFF2772at 202.734 kb on - strand, within GFF2772at 202.734 kb on - strand, within GFF2772at 202.734 kb on - strand, within GFF2772at 202.734 kb on - strand, within GFF2772at 202.734 kb on - strand, within GFF2772at 202.734 kb on - strand, within GFF2772at 202.734 kb on - strand, within GFF2772at 202.935 kb on + strandat 202.936 kb on - strandat 203.038 kb on + strandat 203.038 kb on + strandat 203.039 kb on - strandat 203.039 kb on - strandat 203.047 kb on + strandat 203.048 kb on - strandat 203.048 kb on - strandat 203.216 kb on - strand, within GFF2773at 203.218 kb on + strand, within GFF2773at 203.218 kb on + strand, within GFF2773at 203.218 kb on + strand, within GFF2773at 203.218 kb on + strand, within GFF2773at 203.218 kb on + strand, within GFF2773at 203.219 kb on - strand, within GFF2773at 203.219 kb on - strand, within GFF2773at 203.219 kb on - strand, within GFF2773at 203.219 kb on - strand, within GFF2773at 203.458 kb on + strand, within GFF2773at 203.458 kb on + strand, within GFF2773at 203.458 kb on + strand, within GFF2773at 203.458 kb on + strand, within GFF2773at 203.458 kb on + strand, within GFF2773at 203.458 kb on + strand, within GFF2773at 203.458 kb on + strand, within GFF2773at 203.458 kb on + strand, within GFF2773at 203.458 kb on + strand, within GFF2773at 203.458 kb on + strand, within GFF2773at 203.459 kb on - strand, within GFF2773at 203.459 kb on - strand, within GFF2773at 203.459 kb on - strand, within GFF2773at 203.459 kb on - strand, within GFF2773at 203.506 kb on + strand, within GFF2773at 203.507 kb on - strand, within GFF2773at 203.512 kb on + strand, within GFF2773at 203.512 kb on + strand, within GFF2773at 203.512 kb on + strand, within GFF2773at 203.512 kb on + strand, within GFF2773at 203.512 kb on + strand, within GFF2773at 203.512 kb on + strand, within GFF2773at 203.512 kb on + strand, within GFF2773at 203.513 kb on - strand, within GFF2773at 203.513 kb on - strand, within GFF2773at 203.513 kb on - strand, within GFF2773at 203.513 kb on - strand, within GFF2773at 203.513 kb on - strand, within GFF2773at 203.513 kb on - strand, within GFF2773at 203.554 kb on + strand, within GFF2773at 203.554 kb on + strand, within GFF2773at 203.554 kb on + strand, within GFF2773at 203.554 kb on + strand, within GFF2773at 203.555 kb on - strand, within GFF2773at 203.555 kb on - strand, within GFF2773at 203.555 kb on - strand, within GFF2773at 203.555 kb on - strand, within GFF2773at 203.711 kb on - strand, within GFF2773at 203.894 kb on - strandat 203.920 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL
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201,420 + GFF2771 0.43 +0.2
201,420 + GFF2771 0.43 -0.1
201,421 - GFF2771 0.43 -0.4
201,421 - GFF2771 0.43 -0.1
201,592 + GFF2771 0.61 -2.2
201,593 - GFF2771 0.61 -0.8
201,593 - GFF2771 0.61 +0.1
201,594 + GFF2771 0.61 +0.3
201,594 + GFF2771 0.61 -0.4
201,594 + GFF2771 0.61 -0.4
201,594 + GFF2771 0.61 -1.2
201,594 + GFF2771 0.61 -0.9
201,594 + GFF2771 0.61 +0.2
201,594 + GFF2771 0.61 -0.8
201,594 + GFF2771 0.61 +1.0
201,594 + GFF2771 0.61 +0.3
201,595 - GFF2771 0.61 +1.1
201,595 - GFF2771 0.61 +0.0
201,595 - GFF2771 0.61 -0.8
201,595 - GFF2771 0.61 -0.6
201,595 - GFF2771 0.61 +0.1
201,595 - GFF2771 0.61 +0.4
201,595 - GFF2771 0.61 -0.5
201,595 - GFF2771 0.61 -0.1
201,595 - GFF2771 0.61 +0.9
201,595 - GFF2771 0.61 +1.6
201,621 + GFF2771 0.64 +0.6
201,621 + GFF2771 0.64 -0.0
201,621 + GFF2771 0.64 -0.3
201,622 - GFF2771 0.64 +0.0
201,622 - GFF2771 0.64 -0.8
201,622 - GFF2771 0.64 +0.0
201,622 - GFF2771 0.64 -1.5
201,622 - GFF2771 0.64 +0.7
201,622 - GFF2771 0.64 -1.1
201,645 + GFF2771 0.66 -2.1
201,645 + GFF2771 0.66 -1.2
201,646 - GFF2771 0.67 -1.6
201,646 - GFF2771 0.67 -0.2
201,666 + GFF2771 0.69 +0.8
201,666 + GFF2771 0.69 -1.7
201,667 - GFF2771 0.69 -1.1
201,711 + GFF2771 0.73 -0.5
201,712 - GFF2771 0.73 +0.6
201,774 + GFF2771 0.80 -0.1
201,774 + GFF2771 0.80 +0.6
201,774 + GFF2771 0.80 +0.3
201,775 - GFF2771 0.80 -2.1
202,073 + +0.2
202,073 + +0.0
202,073 + -0.6
202,073 + -0.4
202,073 + +0.1
202,073 + -0.7
202,074 - -2.0
202,074 - +0.0
202,074 - -0.1
202,074 - -1.0
202,074 - -0.6
202,074 - -0.0
202,074 - -0.5
202,331 + GFF2772 0.35 -1.2
202,478 + GFF2772 0.51 -0.7
202,479 - GFF2772 0.51 -0.5
202,479 - GFF2772 0.51 -2.1
202,479 - GFF2772 0.51 +0.2
202,661 + GFF2772 0.71 +1.1
202,661 + GFF2772 0.71 -0.1
202,661 + GFF2772 0.71 -1.6
202,661 + GFF2772 0.71 -0.1
202,662 - GFF2772 0.71 -0.3
202,662 - GFF2772 0.71 -1.5
202,733 + GFF2772 0.79 -0.1
202,733 + GFF2772 0.79 -1.6
202,733 + GFF2772 0.79 +0.0
202,733 + GFF2772 0.79 +0.0
202,733 + GFF2772 0.79 -1.4
202,733 + GFF2772 0.79 +0.6
202,733 + GFF2772 0.79 -0.6
202,733 + GFF2772 0.79 -2.0
202,733 + GFF2772 0.79 -0.6
202,734 - GFF2772 0.79 -0.1
202,734 - GFF2772 0.79 -1.0
202,734 - GFF2772 0.79 +0.6
202,734 - GFF2772 0.79 +0.0
202,734 - GFF2772 0.79 -1.6
202,734 - GFF2772 0.79 -0.7
202,734 - GFF2772 0.79 +0.6
202,734 - GFF2772 0.79 -0.1
202,935 + +0.4
202,936 - -0.7
203,038 + -0.3
203,038 + +0.4
203,039 - -0.4
203,039 - +0.4
203,047 + -0.6
203,048 - -0.5
203,048 - -0.6
203,216 - GFF2773 0.22 +0.0
203,218 + GFF2773 0.23 +0.2
203,218 + GFF2773 0.23 +1.4
203,218 + GFF2773 0.23 -0.5
203,218 + GFF2773 0.23 +0.7
203,218 + GFF2773 0.23 -0.0
203,219 - GFF2773 0.23 -0.3
203,219 - GFF2773 0.23 -0.3
203,219 - GFF2773 0.23 -0.4
203,219 - GFF2773 0.23 -0.7
203,458 + GFF2773 0.47 -1.2
203,458 + GFF2773 0.47 -0.2
203,458 + GFF2773 0.47 +0.1
203,458 + GFF2773 0.47 -0.4
203,458 + GFF2773 0.47 -0.3
203,458 + GFF2773 0.47 -0.7
203,458 + GFF2773 0.47 -1.1
203,458 + GFF2773 0.47 -0.9
203,458 + GFF2773 0.47 -0.3
203,458 + GFF2773 0.47 -0.1
203,459 - GFF2773 0.47 -0.4
203,459 - GFF2773 0.47 +0.1
203,459 - GFF2773 0.47 +0.1
203,459 - GFF2773 0.47 -2.0
203,506 + GFF2773 0.52 +0.4
203,507 - GFF2773 0.52 -0.6
203,512 + GFF2773 0.53 -1.2
203,512 + GFF2773 0.53 +0.7
203,512 + GFF2773 0.53 -0.6
203,512 + GFF2773 0.53 -0.3
203,512 + GFF2773 0.53 -0.5
203,512 + GFF2773 0.53 -1.2
203,512 + GFF2773 0.53 +0.2
203,513 - GFF2773 0.53 -0.9
203,513 - GFF2773 0.53 +0.8
203,513 - GFF2773 0.53 -0.5
203,513 - GFF2773 0.53 +0.1
203,513 - GFF2773 0.53 +0.5
203,513 - GFF2773 0.53 -0.6
203,554 + GFF2773 0.57 -0.2
203,554 + GFF2773 0.57 -0.5
203,554 + GFF2773 0.57 -1.6
203,554 + GFF2773 0.57 +0.3
203,555 - GFF2773 0.57 -0.9
203,555 - GFF2773 0.57 +0.2
203,555 - GFF2773 0.57 -0.2
203,555 - GFF2773 0.57 -1.6
203,711 - GFF2773 0.73 +1.6
203,894 - -0.7
203,920 - +0.0

Or see this region's nucleotide sequence