Experiment: M9 with calcium pantothenate 10 mg/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2741 and GFF2742 are separated by 5 nucleotides GFF2742 and GFF2743 are separated by 91 nucleotides GFF2743 and GFF2744 are separated by 94 nucleotides GFF2744 and GFF2745 overlap by 4 nucleotides
GFF2741 - FIG002207: Probable transmembrane protein, at 176,456 to 177,547
GFF2741
GFF2742 - Metal-dependent hydrolases of the beta-lactamase superfamily I, at 177,553 to 178,329
GFF2742
GFF2743 - hypothetical protein, at 178,421 to 178,726
GFF2743
GFF2744 - FIG00932369: hypothetical protein, at 178,821 to 179,321
GFF2744
GFF2745 - FIG074102: hypothetical protein, at 179,318 to 180,460
GFF2745
Position (kb) 178
179 Strain fitness (log2 ratio) -2
-1
0
1
2 at 177.545 kb on + strand at 177.546 kb on - strand at 177.546 kb on - strand at 177.713 kb on + strand, within GFF2742 at 177.714 kb on - strand, within GFF2742 at 177.989 kb on + strand, within GFF2742 at 177.989 kb on + strand, within GFF2742 at 177.989 kb on + strand, within GFF2742 at 177.990 kb on - strand, within GFF2742 at 177.990 kb on - strand, within GFF2742 at 178.088 kb on - strand, within GFF2742 at 178.088 kb on - strand, within GFF2742 at 178.123 kb on + strand, within GFF2742 at 178.123 kb on + strand, within GFF2742 at 178.123 kb on + strand, within GFF2742 at 178.124 kb on - strand, within GFF2742 at 178.124 kb on - strand, within GFF2742 at 178.124 kb on - strand, within GFF2742 at 178.124 kb on - strand, within GFF2742 at 178.124 kb on - strand, within GFF2742 at 178.124 kb on - strand, within GFF2742 at 178.124 kb on - strand, within GFF2742 at 178.124 kb on - strand, within GFF2742 at 178.124 kb on - strand, within GFF2742 at 178.359 kb on + strand at 178.359 kb on + strand at 178.360 kb on - strand at 178.360 kb on - strand at 178.360 kb on - strand at 178.360 kb on - strand at 178.368 kb on + strand at 178.422 kb on + strand at 178.422 kb on + strand at 178.422 kb on + strand at 178.422 kb on + strand at 178.422 kb on + strand at 178.422 kb on + strand at 178.423 kb on - strand at 178.423 kb on - strand at 178.768 kb on + strand at 178.778 kb on + strand at 178.778 kb on + strand at 178.778 kb on + strand at 178.779 kb on - strand at 178.790 kb on + strand at 178.790 kb on + strand at 178.790 kb on + strand at 178.790 kb on + strand at 178.790 kb on + strand at 178.790 kb on + strand at 178.790 kb on + strand at 178.791 kb on - strand at 178.791 kb on - strand at 178.791 kb on - strand at 178.791 kb on - strand at 178.791 kb on - strand at 178.791 kb on - strand at 178.822 kb on + strand at 178.822 kb on + strand at 178.822 kb on + strand at 178.822 kb on + strand at 178.822 kb on + strand at 178.822 kb on + strand at 178.822 kb on + strand at 178.822 kb on + strand at 178.823 kb on - strand at 178.823 kb on - strand at 178.823 kb on - strand at 179.481 kb on + strand, within GFF2745 at 179.481 kb on + strand, within GFF2745 at 179.481 kb on + strand, within GFF2745 at 179.481 kb on + strand, within GFF2745 at 179.481 kb on + strand, within GFF2745 at 179.481 kb on + strand, within GFF2745 at 179.481 kb on + strand, within GFF2745 at 179.481 kb on + strand, within GFF2745 at 179.481 kb on + strand, within GFF2745 at 179.481 kb on + strand, within GFF2745 at 179.481 kb on + strand, within GFF2745 at 179.481 kb on + strand, within GFF2745 at 179.482 kb on - strand, within GFF2745 at 179.482 kb on - strand, within GFF2745 at 179.482 kb on - strand, within GFF2745 at 179.482 kb on - strand, within GFF2745 at 179.482 kb on - strand, within GFF2745 at 179.482 kb on - strand, within GFF2745 at 179.482 kb on - strand, within GFF2745 at 179.482 kb on - strand, within GFF2745 at 179.482 kb on - strand, within GFF2745 at 179.482 kb on - strand, within GFF2745 at 179.482 kb on - strand, within GFF2745 at 179.482 kb on - strand, within GFF2745 at 179.499 kb on + strand, within GFF2745
Per-strain Table
Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL remove 177,545 + +0.8 177,546 - -0.1 177,546 - -0.7 177,713 + GFF2742 0.21 +0.7 177,714 - GFF2742 0.21 +1.9 177,989 + GFF2742 0.56 -0.1 177,989 + GFF2742 0.56 +1.6 177,989 + GFF2742 0.56 -0.0 177,990 - GFF2742 0.56 +1.6 177,990 - GFF2742 0.56 +0.0 178,088 - GFF2742 0.69 +1.3 178,088 - GFF2742 0.69 -0.2 178,123 + GFF2742 0.73 +0.3 178,123 + GFF2742 0.73 +0.8 178,123 + GFF2742 0.73 -1.3 178,124 - GFF2742 0.73 +0.2 178,124 - GFF2742 0.73 +0.6 178,124 - GFF2742 0.73 -1.7 178,124 - GFF2742 0.73 -0.1 178,124 - GFF2742 0.73 +0.5 178,124 - GFF2742 0.73 +0.0 178,124 - GFF2742 0.73 +0.4 178,124 - GFF2742 0.73 +0.8 178,124 - GFF2742 0.73 -0.3 178,359 + -0.4 178,359 + -0.1 178,360 - -0.2 178,360 - -2.1 178,360 - -0.9 178,360 - +0.6 178,368 + +0.2 178,422 + -1.8 178,422 + -0.9 178,422 + +1.6 178,422 + +0.8 178,422 + -1.1 178,422 + +0.3 178,423 - -1.9 178,423 - -1.0 178,768 + -0.1 178,778 + -0.2 178,778 + +0.2 178,778 + -0.0 178,779 - -1.6 178,790 + -0.6 178,790 + -0.9 178,790 + -1.3 178,790 + -0.2 178,790 + -0.8 178,790 + -0.3 178,790 + +0.3 178,791 - +0.3 178,791 - -0.3 178,791 - -0.7 178,791 - -0.9 178,791 - -0.6 178,791 - -0.5 178,822 + +0.3 178,822 + +0.4 178,822 + +1.6 178,822 + -1.5 178,822 + -0.3 178,822 + +0.4 178,822 + -1.0 178,822 + -0.1 178,823 - +0.3 178,823 - -0.7 178,823 - -0.2 179,481 + GFF2745 0.14 -0.8 179,481 + GFF2745 0.14 -0.0 179,481 + GFF2745 0.14 -0.0 179,481 + GFF2745 0.14 -0.9 179,481 + GFF2745 0.14 +0.0 179,481 + GFF2745 0.14 -0.1 179,481 + GFF2745 0.14 +0.3 179,481 + GFF2745 0.14 -1.1 179,481 + GFF2745 0.14 -1.1 179,481 + GFF2745 0.14 +0.8 179,481 + GFF2745 0.14 -1.2 179,481 + GFF2745 0.14 -0.9 179,482 - GFF2745 0.14 +2.6 179,482 - GFF2745 0.14 -0.6 179,482 - GFF2745 0.14 +0.5 179,482 - GFF2745 0.14 -1.2 179,482 - GFF2745 0.14 -0.2 179,482 - GFF2745 0.14 -0.6 179,482 - GFF2745 0.14 -0.7 179,482 - GFF2745 0.14 -1.2 179,482 - GFF2745 0.14 +0.0 179,482 - GFF2745 0.14 -0.1 179,482 - GFF2745 0.14 -0.5 179,482 - GFF2745 0.14 -0.2 179,499 + GFF2745 0.16 -1.1
Or see this region's nucleotide sequence