Strain Fitness in Variovorax sp. SCN45 around GFF2741

Experiment: M9 with calcium pantothenate 10 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2740 and GFF2741 are separated by 149 nucleotidesGFF2741 and GFF2742 are separated by 5 nucleotidesGFF2742 and GFF2743 are separated by 91 nucleotides GFF2740 - 4-hydroxy-tetrahydrodipicolinate synthase (EC 4.3.3.7), at 175,416 to 176,306 GFF2740 GFF2741 - FIG002207: Probable transmembrane protein, at 176,456 to 177,547 GFF2741 GFF2742 - Metal-dependent hydrolases of the beta-lactamase superfamily I, at 177,553 to 178,329 GFF2742 GFF2743 - hypothetical protein, at 178,421 to 178,726 GFF2743 Position (kb) 176 177 178Strain fitness (log2 ratio) -2 -1 0 1 2at 175.737 kb on + strand, within GFF2740at 175.737 kb on + strand, within GFF2740at 175.737 kb on + strand, within GFF2740at 175.737 kb on + strand, within GFF2740at 175.740 kb on + strand, within GFF2740at 175.740 kb on + strand, within GFF2740at 175.740 kb on + strand, within GFF2740at 175.740 kb on + strand, within GFF2740at 175.740 kb on + strand, within GFF2740at 175.741 kb on - strand, within GFF2740at 175.741 kb on - strand, within GFF2740at 175.741 kb on - strand, within GFF2740at 175.741 kb on - strand, within GFF2740at 175.741 kb on - strand, within GFF2740at 175.741 kb on - strand, within GFF2740at 175.741 kb on - strand, within GFF2740at 175.741 kb on - strand, within GFF2740at 175.741 kb on - strand, within GFF2740at 175.767 kb on + strand, within GFF2740at 175.767 kb on + strand, within GFF2740at 175.767 kb on + strand, within GFF2740at 175.768 kb on - strand, within GFF2740at 175.768 kb on - strand, within GFF2740at 175.821 kb on + strand, within GFF2740at 175.821 kb on + strand, within GFF2740at 175.821 kb on + strand, within GFF2740at 175.821 kb on + strand, within GFF2740at 175.821 kb on + strand, within GFF2740at 175.821 kb on + strand, within GFF2740at 175.822 kb on - strand, within GFF2740at 175.822 kb on - strand, within GFF2740at 175.822 kb on - strand, within GFF2740at 175.822 kb on - strand, within GFF2740at 175.822 kb on - strand, within GFF2740at 175.822 kb on - strand, within GFF2740at 175.822 kb on - strand, within GFF2740at 175.822 kb on - strand, within GFF2740at 175.975 kb on - strand, within GFF2740at 175.975 kb on - strand, within GFF2740at 175.975 kb on - strand, within GFF2740at 175.975 kb on - strand, within GFF2740at 176.369 kb on - strandat 176.369 kb on - strandat 176.369 kb on - strandat 176.410 kb on + strandat 176.411 kb on - strandat 176.424 kb on + strandat 176.424 kb on + strandat 176.424 kb on + strandat 176.424 kb on + strandat 176.425 kb on - strandat 176.425 kb on - strandat 176.438 kb on - strandat 176.483 kb on + strandat 176.483 kb on + strandat 176.484 kb on - strandat 176.552 kb on + strandat 176.552 kb on + strandat 176.625 kb on - strand, within GFF2741at 176.661 kb on - strand, within GFF2741at 177.323 kb on + strand, within GFF2741at 177.323 kb on + strand, within GFF2741at 177.323 kb on + strand, within GFF2741at 177.323 kb on + strand, within GFF2741at 177.324 kb on - strand, within GFF2741at 177.335 kb on + strand, within GFF2741at 177.335 kb on + strand, within GFF2741at 177.335 kb on + strand, within GFF2741at 177.336 kb on - strand, within GFF2741at 177.336 kb on - strand, within GFF2741at 177.545 kb on + strandat 177.546 kb on - strandat 177.546 kb on - strandat 177.713 kb on + strand, within GFF2742at 177.714 kb on - strand, within GFF2742at 177.989 kb on + strand, within GFF2742at 177.989 kb on + strand, within GFF2742at 177.989 kb on + strand, within GFF2742at 177.990 kb on - strand, within GFF2742at 177.990 kb on - strand, within GFF2742at 178.088 kb on - strand, within GFF2742at 178.088 kb on - strand, within GFF2742at 178.123 kb on + strand, within GFF2742at 178.123 kb on + strand, within GFF2742at 178.123 kb on + strand, within GFF2742at 178.124 kb on - strand, within GFF2742at 178.124 kb on - strand, within GFF2742at 178.124 kb on - strand, within GFF2742at 178.124 kb on - strand, within GFF2742at 178.124 kb on - strand, within GFF2742at 178.124 kb on - strand, within GFF2742at 178.124 kb on - strand, within GFF2742at 178.124 kb on - strand, within GFF2742at 178.124 kb on - strand, within GFF2742at 178.359 kb on + strandat 178.359 kb on + strandat 178.360 kb on - strandat 178.360 kb on - strandat 178.360 kb on - strandat 178.360 kb on - strandat 178.368 kb on + strandat 178.422 kb on + strandat 178.422 kb on + strandat 178.422 kb on + strandat 178.422 kb on + strandat 178.422 kb on + strandat 178.422 kb on + strandat 178.423 kb on - strandat 178.423 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL
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175,737 + GFF2740 0.36 -0.7
175,737 + GFF2740 0.36 -0.4
175,737 + GFF2740 0.36 +0.4
175,737 + GFF2740 0.36 -0.9
175,740 + GFF2740 0.36 +0.5
175,740 + GFF2740 0.36 -0.1
175,740 + GFF2740 0.36 -0.8
175,740 + GFF2740 0.36 -0.8
175,740 + GFF2740 0.36 -0.2
175,741 - GFF2740 0.36 +0.1
175,741 - GFF2740 0.36 -1.7
175,741 - GFF2740 0.36 +1.3
175,741 - GFF2740 0.36 -1.9
175,741 - GFF2740 0.36 -0.6
175,741 - GFF2740 0.36 +0.6
175,741 - GFF2740 0.36 -1.2
175,741 - GFF2740 0.36 -0.6
175,741 - GFF2740 0.36 -0.8
175,767 + GFF2740 0.39 +0.4
175,767 + GFF2740 0.39 +1.6
175,767 + GFF2740 0.39 +0.1
175,768 - GFF2740 0.40 +1.6
175,768 - GFF2740 0.40 -1.3
175,821 + GFF2740 0.45 +0.7
175,821 + GFF2740 0.45 -1.7
175,821 + GFF2740 0.45 +0.9
175,821 + GFF2740 0.45 -0.7
175,821 + GFF2740 0.45 -1.0
175,821 + GFF2740 0.45 +0.6
175,822 - GFF2740 0.46 -0.2
175,822 - GFF2740 0.46 +0.4
175,822 - GFF2740 0.46 -0.3
175,822 - GFF2740 0.46 +0.1
175,822 - GFF2740 0.46 +0.3
175,822 - GFF2740 0.46 +0.0
175,822 - GFF2740 0.46 +0.1
175,822 - GFF2740 0.46 -0.2
175,975 - GFF2740 0.63 -1.7
175,975 - GFF2740 0.63 +0.1
175,975 - GFF2740 0.63 -0.4
175,975 - GFF2740 0.63 +0.4
176,369 - -0.6
176,369 - +0.7
176,369 - -0.7
176,410 + -1.4
176,411 - -0.9
176,424 + +0.1
176,424 + -1.2
176,424 + -0.3
176,424 + -0.8
176,425 - -0.7
176,425 - -1.1
176,438 - -0.3
176,483 + -1.4
176,483 + -0.4
176,484 - -0.6
176,552 + -0.5
176,552 + -1.2
176,625 - GFF2741 0.15 +0.7
176,661 - GFF2741 0.19 -1.6
177,323 + GFF2741 0.79 -0.7
177,323 + GFF2741 0.79 +0.0
177,323 + GFF2741 0.79 -0.1
177,323 + GFF2741 0.79 -0.4
177,324 - GFF2741 0.79 -0.3
177,335 + GFF2741 0.80 -2.0
177,335 + GFF2741 0.80 -1.0
177,335 + GFF2741 0.80 +0.6
177,336 - GFF2741 0.81 +0.7
177,336 - GFF2741 0.81 -1.2
177,545 + +0.8
177,546 - -0.1
177,546 - -0.7
177,713 + GFF2742 0.21 +0.7
177,714 - GFF2742 0.21 +1.9
177,989 + GFF2742 0.56 -0.1
177,989 + GFF2742 0.56 +1.6
177,989 + GFF2742 0.56 -0.0
177,990 - GFF2742 0.56 +1.6
177,990 - GFF2742 0.56 +0.0
178,088 - GFF2742 0.69 +1.3
178,088 - GFF2742 0.69 -0.2
178,123 + GFF2742 0.73 +0.3
178,123 + GFF2742 0.73 +0.8
178,123 + GFF2742 0.73 -1.3
178,124 - GFF2742 0.73 +0.2
178,124 - GFF2742 0.73 +0.6
178,124 - GFF2742 0.73 -1.7
178,124 - GFF2742 0.73 -0.1
178,124 - GFF2742 0.73 +0.5
178,124 - GFF2742 0.73 +0.0
178,124 - GFF2742 0.73 +0.4
178,124 - GFF2742 0.73 +0.8
178,124 - GFF2742 0.73 -0.3
178,359 + -0.4
178,359 + -0.1
178,360 - -0.2
178,360 - -2.1
178,360 - -0.9
178,360 - +0.6
178,368 + +0.2
178,422 + -1.8
178,422 + -0.9
178,422 + +1.6
178,422 + +0.8
178,422 + -1.1
178,422 + +0.3
178,423 - -1.9
178,423 - -1.0

Or see this region's nucleotide sequence