Strain Fitness in Variovorax sp. SCN45 around GFF2557

Experiment: M9 with calcium pantothenate 10 mg/mL

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGFF2555 and GFF2556 are separated by 127 nucleotidesGFF2556 and GFF2557 are separated by 73 nucleotidesGFF2557 and GFF2558 are separated by 97 nucleotidesGFF2558 and GFF2559 overlap by 4 nucleotides GFF2555 - FIG00932538: hypothetical protein, at 617,113 to 617,937 GFF2555 GFF2556 - UPF0337 family protein, at 618,065 to 618,262 GFF2556 GFF2557 - transport-associated, at 618,336 to 618,854 GFF2557 GFF2558 - DNA protection during starvation protein, at 618,952 to 619,512 GFF2558 GFF2559 - hypothetical protein, at 619,509 to 620,021 GFF2559 Position (kb) 618 619Strain fitness (log2 ratio) -2 -1 0 1 2at 617.368 kb on + strand, within GFF2555at 617.368 kb on + strand, within GFF2555at 617.369 kb on - strand, within GFF2555at 617.369 kb on - strand, within GFF2555at 617.369 kb on - strand, within GFF2555at 617.369 kb on - strand, within GFF2555at 617.369 kb on - strand, within GFF2555at 617.515 kb on + strand, within GFF2555at 617.515 kb on + strand, within GFF2555at 617.515 kb on + strand, within GFF2555at 617.515 kb on + strand, within GFF2555at 617.515 kb on + strand, within GFF2555at 617.515 kb on + strand, within GFF2555at 617.515 kb on + strand, within GFF2555at 617.515 kb on + strand, within GFF2555at 617.516 kb on - strand, within GFF2555at 617.516 kb on - strand, within GFF2555at 617.516 kb on - strand, within GFF2555at 617.516 kb on - strand, within GFF2555at 617.516 kb on - strand, within GFF2555at 617.516 kb on - strand, within GFF2555at 617.516 kb on - strand, within GFF2555at 617.516 kb on - strand, within GFF2555at 617.516 kb on - strand, within GFF2555at 617.516 kb on - strand, within GFF2555at 617.516 kb on - strand, within GFF2555at 617.614 kb on + strand, within GFF2555at 617.614 kb on + strand, within GFF2555at 617.614 kb on + strand, within GFF2555at 617.614 kb on + strand, within GFF2555at 617.614 kb on + strand, within GFF2555at 617.615 kb on - strand, within GFF2555at 617.656 kb on + strand, within GFF2555at 617.656 kb on + strand, within GFF2555at 617.656 kb on + strand, within GFF2555at 617.656 kb on + strand, within GFF2555at 617.656 kb on + strand, within GFF2555at 617.656 kb on + strand, within GFF2555at 617.657 kb on - strand, within GFF2555at 617.657 kb on - strand, within GFF2555at 617.657 kb on - strand, within GFF2555at 617.657 kb on - strand, within GFF2555at 617.657 kb on - strand, within GFF2555at 617.657 kb on - strand, within GFF2555at 617.657 kb on - strand, within GFF2555at 617.657 kb on - strand, within GFF2555at 617.950 kb on + strandat 617.950 kb on + strandat 617.950 kb on + strandat 617.950 kb on + strandat 617.950 kb on + strandat 617.951 kb on - strandat 617.951 kb on - strandat 617.951 kb on - strandat 617.951 kb on - strandat 618.020 kb on - strandat 618.020 kb on - strandat 618.032 kb on + strandat 618.032 kb on + strandat 618.032 kb on + strandat 618.032 kb on + strandat 618.033 kb on - strandat 618.033 kb on - strandat 618.203 kb on + strand, within GFF2556at 618.203 kb on + strand, within GFF2556at 618.203 kb on + strand, within GFF2556at 618.203 kb on + strand, within GFF2556at 618.203 kb on + strand, within GFF2556at 618.203 kb on + strand, within GFF2556at 618.203 kb on + strand, within GFF2556at 618.203 kb on + strand, within GFF2556at 618.204 kb on - strand, within GFF2556at 618.204 kb on - strand, within GFF2556at 618.204 kb on - strand, within GFF2556at 618.204 kb on - strand, within GFF2556at 618.219 kb on - strand, within GFF2556at 618.500 kb on + strand, within GFF2557at 618.500 kb on + strand, within GFF2557at 618.708 kb on - strand, within GFF2557at 618.942 kb on + strandat 618.942 kb on + strandat 619.070 kb on + strand, within GFF2558at 619.071 kb on - strand, within GFF2558at 619.142 kb on + strand, within GFF2558at 619.142 kb on + strand, within GFF2558at 619.142 kb on + strand, within GFF2558at 619.307 kb on + strand, within GFF2558at 619.307 kb on + strand, within GFF2558at 619.307 kb on + strand, within GFF2558at 619.307 kb on + strand, within GFF2558at 619.307 kb on + strand, within GFF2558at 619.307 kb on + strand, within GFF2558at 619.307 kb on + strand, within GFF2558at 619.307 kb on + strand, within GFF2558at 619.308 kb on - strand, within GFF2558at 619.308 kb on - strand, within GFF2558at 619.319 kb on + strand, within GFF2558at 619.319 kb on + strand, within GFF2558at 619.319 kb on + strand, within GFF2558at 619.395 kb on - strand, within GFF2558at 619.395 kb on - strand, within GFF2558at 619.395 kb on - strand, within GFF2558at 619.395 kb on - strand, within GFF2558at 619.590 kb on + strand, within GFF2559at 619.590 kb on + strand, within GFF2559at 619.591 kb on - strand, within GFF2559at 619.591 kb on - strand, within GFF2559at 619.702 kb on + strand, within GFF2559at 619.702 kb on + strand, within GFF2559at 619.702 kb on + strand, within GFF2559at 619.702 kb on + strand, within GFF2559at 619.703 kb on - strand, within GFF2559at 619.703 kb on - strand, within GFF2559

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL
remove
617,368 + GFF2555 0.31 +0.9
617,368 + GFF2555 0.31 -0.7
617,369 - GFF2555 0.31 -1.0
617,369 - GFF2555 0.31 +0.0
617,369 - GFF2555 0.31 -0.2
617,369 - GFF2555 0.31 -0.2
617,369 - GFF2555 0.31 +0.4
617,515 + GFF2555 0.49 +1.7
617,515 + GFF2555 0.49 -0.5
617,515 + GFF2555 0.49 -0.1
617,515 + GFF2555 0.49 -0.2
617,515 + GFF2555 0.49 +1.1
617,515 + GFF2555 0.49 -0.3
617,515 + GFF2555 0.49 +0.1
617,515 + GFF2555 0.49 -0.1
617,516 - GFF2555 0.49 -0.4
617,516 - GFF2555 0.49 -0.5
617,516 - GFF2555 0.49 -0.5
617,516 - GFF2555 0.49 -0.3
617,516 - GFF2555 0.49 -0.4
617,516 - GFF2555 0.49 +0.5
617,516 - GFF2555 0.49 -0.1
617,516 - GFF2555 0.49 -0.3
617,516 - GFF2555 0.49 -0.5
617,516 - GFF2555 0.49 -0.3
617,516 - GFF2555 0.49 -0.8
617,614 + GFF2555 0.61 +0.5
617,614 + GFF2555 0.61 +0.2
617,614 + GFF2555 0.61 +0.5
617,614 + GFF2555 0.61 +0.0
617,614 + GFF2555 0.61 -1.3
617,615 - GFF2555 0.61 +0.1
617,656 + GFF2555 0.66 -1.1
617,656 + GFF2555 0.66 +1.7
617,656 + GFF2555 0.66 -0.9
617,656 + GFF2555 0.66 -0.3
617,656 + GFF2555 0.66 -0.2
617,656 + GFF2555 0.66 -0.4
617,657 - GFF2555 0.66 +0.7
617,657 - GFF2555 0.66 +0.6
617,657 - GFF2555 0.66 -0.1
617,657 - GFF2555 0.66 -1.6
617,657 - GFF2555 0.66 +1.2
617,657 - GFF2555 0.66 -0.4
617,657 - GFF2555 0.66 +0.4
617,657 - GFF2555 0.66 +1.3
617,950 + -0.8
617,950 + +1.1
617,950 + -0.6
617,950 + +0.9
617,950 + +0.8
617,951 - +1.9
617,951 - -0.4
617,951 - -0.8
617,951 - -0.3
618,020 - +0.0
618,020 - +0.8
618,032 + +1.3
618,032 + +0.5
618,032 + -0.3
618,032 + -1.5
618,033 - -1.7
618,033 - +0.2
618,203 + GFF2556 0.70 -0.6
618,203 + GFF2556 0.70 -0.9
618,203 + GFF2556 0.70 -0.8
618,203 + GFF2556 0.70 -0.5
618,203 + GFF2556 0.70 -0.0
618,203 + GFF2556 0.70 -0.7
618,203 + GFF2556 0.70 +1.4
618,203 + GFF2556 0.70 +0.2
618,204 - GFF2556 0.70 +1.7
618,204 - GFF2556 0.70 -1.6
618,204 - GFF2556 0.70 +0.6
618,204 - GFF2556 0.70 -0.9
618,219 - GFF2556 0.78 -0.4
618,500 + GFF2557 0.32 -0.1
618,500 + GFF2557 0.32 -2.6
618,708 - GFF2557 0.72 -0.8
618,942 + +1.2
618,942 + +0.2
619,070 + GFF2558 0.21 -0.1
619,071 - GFF2558 0.21 -0.3
619,142 + GFF2558 0.34 +1.4
619,142 + GFF2558 0.34 -0.6
619,142 + GFF2558 0.34 -1.3
619,307 + GFF2558 0.63 +1.3
619,307 + GFF2558 0.63 -0.3
619,307 + GFF2558 0.63 -0.6
619,307 + GFF2558 0.63 +0.4
619,307 + GFF2558 0.63 -0.3
619,307 + GFF2558 0.63 -0.4
619,307 + GFF2558 0.63 +0.1
619,307 + GFF2558 0.63 +0.4
619,308 - GFF2558 0.63 -0.8
619,308 - GFF2558 0.63 -1.1
619,319 + GFF2558 0.65 +0.2
619,319 + GFF2558 0.65 -1.0
619,319 + GFF2558 0.65 +0.6
619,395 - GFF2558 0.79 -0.3
619,395 - GFF2558 0.79 -1.4
619,395 - GFF2558 0.79 -0.5
619,395 - GFF2558 0.79 +0.4
619,590 + GFF2559 0.16 +0.2
619,590 + GFF2559 0.16 -0.5
619,591 - GFF2559 0.16 +0.3
619,591 - GFF2559 0.16 -1.1
619,702 + GFF2559 0.38 +0.1
619,702 + GFF2559 0.38 -0.6
619,702 + GFF2559 0.38 -0.8
619,702 + GFF2559 0.38 +0.0
619,703 - GFF2559 0.38 +2.3
619,703 - GFF2559 0.38 +0.1

Or see this region's nucleotide sequence