Strain Fitness in Variovorax sp. SCN45 around GFF253

Experiment: M9 with calcium pantothenate 10 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF252 and GFF253 are separated by 84 nucleotidesGFF253 and GFF254 are separated by 31 nucleotides GFF252 - Zinc-type alcohol dehydrogenase-like protein, at 283,727 to 284,743 GFF252 GFF253 - Transcriptional regulator, LysR family, at 284,828 to 285,727 GFF253 GFF254 - N-succinyl-L,L-diaminopimelate aminotransferase (EC 2.6.1.17), type 2, at 285,759 to 286,979 GFF254 Position (kb) 284 285 286Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 283.949 kb on - strand, within GFF252at 283.950 kb on + strand, within GFF252at 283.950 kb on + strand, within GFF252at 283.950 kb on + strand, within GFF252at 283.950 kb on + strand, within GFF252at 283.951 kb on - strand, within GFF252at 284.025 kb on + strand, within GFF252at 284.079 kb on + strand, within GFF252at 284.079 kb on + strand, within GFF252at 284.079 kb on + strand, within GFF252at 284.079 kb on + strand, within GFF252at 284.079 kb on + strand, within GFF252at 284.079 kb on + strand, within GFF252at 284.079 kb on + strand, within GFF252at 284.079 kb on + strand, within GFF252at 284.080 kb on - strand, within GFF252at 284.080 kb on - strand, within GFF252at 284.080 kb on - strand, within GFF252at 284.080 kb on - strand, within GFF252at 284.080 kb on - strand, within GFF252at 284.081 kb on - strand, within GFF252at 284.121 kb on + strand, within GFF252at 284.121 kb on + strand, within GFF252at 284.121 kb on + strand, within GFF252at 284.121 kb on + strand, within GFF252at 284.122 kb on - strand, within GFF252at 284.122 kb on - strand, within GFF252at 284.122 kb on - strand, within GFF252at 284.122 kb on - strand, within GFF252at 284.122 kb on - strand, within GFF252at 284.122 kb on - strand, within GFF252at 284.145 kb on + strand, within GFF252at 284.421 kb on + strand, within GFF252at 284.421 kb on + strand, within GFF252at 284.421 kb on + strand, within GFF252at 284.422 kb on - strand, within GFF252at 284.422 kb on - strand, within GFF252at 284.422 kb on - strand, within GFF252at 284.469 kb on + strand, within GFF252at 284.469 kb on + strand, within GFF252at 284.470 kb on - strand, within GFF252at 284.470 kb on - strand, within GFF252at 284.470 kb on - strand, within GFF252at 284.470 kb on - strand, within GFF252at 284.470 kb on - strand, within GFF252at 284.470 kb on - strand, within GFF252at 284.816 kb on - strandat 284.837 kb on + strandat 285.326 kb on + strand, within GFF253at 285.326 kb on + strand, within GFF253at 285.326 kb on + strand, within GFF253at 285.326 kb on + strand, within GFF253at 285.326 kb on + strand, within GFF253at 285.326 kb on + strand, within GFF253at 285.326 kb on + strand, within GFF253at 285.326 kb on + strand, within GFF253at 285.326 kb on + strand, within GFF253at 285.326 kb on + strand, within GFF253at 285.326 kb on + strand, within GFF253at 285.326 kb on + strand, within GFF253at 285.327 kb on - strand, within GFF253at 285.327 kb on - strand, within GFF253at 285.327 kb on - strand, within GFF253at 285.327 kb on - strand, within GFF253at 285.327 kb on - strand, within GFF253at 285.327 kb on - strand, within GFF253at 285.327 kb on - strand, within GFF253at 285.327 kb on - strand, within GFF253at 285.327 kb on - strand, within GFF253at 285.327 kb on - strand, within GFF253at 285.359 kb on + strand, within GFF253at 285.359 kb on + strand, within GFF253at 285.359 kb on + strand, within GFF253at 285.359 kb on + strand, within GFF253at 285.360 kb on - strand, within GFF253at 285.360 kb on - strand, within GFF253at 285.360 kb on - strand, within GFF253at 285.360 kb on - strand, within GFF253at 285.360 kb on - strand, within GFF253at 285.369 kb on - strand, within GFF253at 285.369 kb on - strand, within GFF253at 285.369 kb on - strand, within GFF253at 285.369 kb on - strand, within GFF253at 285.369 kb on - strand, within GFF253at 285.653 kb on + strandat 285.654 kb on - strandat 285.708 kb on + strandat 285.708 kb on + strandat 285.708 kb on + strandat 285.708 kb on + strandat 285.708 kb on + strandat 285.708 kb on + strandat 285.709 kb on - strandat 285.709 kb on - strandat 286.002 kb on + strand, within GFF254at 286.002 kb on + strand, within GFF254at 286.137 kb on + strand, within GFF254at 286.137 kb on + strand, within GFF254at 286.138 kb on - strand, within GFF254at 286.138 kb on - strand, within GFF254at 286.138 kb on - strand, within GFF254at 286.147 kb on - strand, within GFF254at 286.147 kb on - strand, within GFF254at 286.147 kb on - strand, within GFF254at 286.147 kb on - strand, within GFF254at 286.147 kb on - strand, within GFF254at 286.147 kb on - strand, within GFF254at 286.182 kb on + strand, within GFF254at 286.182 kb on + strand, within GFF254at 286.182 kb on + strand, within GFF254at 286.183 kb on - strand, within GFF254at 286.185 kb on + strand, within GFF254at 286.185 kb on + strand, within GFF254at 286.186 kb on - strand, within GFF254at 286.186 kb on - strand, within GFF254at 286.186 kb on - strand, within GFF254at 286.186 kb on - strand, within GFF254at 286.380 kb on + strand, within GFF254at 286.380 kb on + strand, within GFF254at 286.380 kb on + strand, within GFF254at 286.381 kb on - strand, within GFF254at 286.381 kb on - strand, within GFF254at 286.381 kb on - strand, within GFF254at 286.393 kb on - strand, within GFF254at 286.393 kb on - strand, within GFF254at 286.393 kb on - strand, within GFF254at 286.393 kb on - strand, within GFF254at 286.393 kb on - strand, within GFF254at 286.393 kb on - strand, within GFF254at 286.525 kb on + strand, within GFF254at 286.526 kb on - strand, within GFF254at 286.564 kb on - strand, within GFF254at 286.572 kb on + strand, within GFF254at 286.572 kb on + strand, within GFF254at 286.572 kb on + strand, within GFF254at 286.572 kb on + strand, within GFF254at 286.573 kb on - strand, within GFF254at 286.573 kb on - strand, within GFF254at 286.573 kb on - strand, within GFF254at 286.573 kb on - strand, within GFF254at 286.662 kb on + strand, within GFF254at 286.663 kb on - strand, within GFF254at 286.663 kb on - strand, within GFF254at 286.663 kb on - strand, within GFF254

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL
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283,949 - GFF252 0.22 -1.4
283,950 + GFF252 0.22 -1.1
283,950 + GFF252 0.22 +1.0
283,950 + GFF252 0.22 +0.5
283,950 + GFF252 0.22 +1.2
283,951 - GFF252 0.22 +0.4
284,025 + GFF252 0.29 -1.8
284,079 + GFF252 0.35 -0.4
284,079 + GFF252 0.35 -2.6
284,079 + GFF252 0.35 +0.6
284,079 + GFF252 0.35 -0.1
284,079 + GFF252 0.35 -0.2
284,079 + GFF252 0.35 +0.2
284,079 + GFF252 0.35 +0.4
284,079 + GFF252 0.35 +0.2
284,080 - GFF252 0.35 -1.0
284,080 - GFF252 0.35 +1.2
284,080 - GFF252 0.35 -0.2
284,080 - GFF252 0.35 -0.8
284,080 - GFF252 0.35 +0.2
284,081 - GFF252 0.35 -0.3
284,121 + GFF252 0.39 +1.1
284,121 + GFF252 0.39 -0.6
284,121 + GFF252 0.39 +0.2
284,121 + GFF252 0.39 -0.0
284,122 - GFF252 0.39 -0.3
284,122 - GFF252 0.39 -0.1
284,122 - GFF252 0.39 -0.8
284,122 - GFF252 0.39 +2.2
284,122 - GFF252 0.39 +0.4
284,122 - GFF252 0.39 +0.2
284,145 + GFF252 0.41 +1.2
284,421 + GFF252 0.68 -3.0
284,421 + GFF252 0.68 -0.5
284,421 + GFF252 0.68 +0.1
284,422 - GFF252 0.68 -0.2
284,422 - GFF252 0.68 -1.2
284,422 - GFF252 0.68 -0.4
284,469 + GFF252 0.73 +0.0
284,469 + GFF252 0.73 -0.2
284,470 - GFF252 0.73 +0.2
284,470 - GFF252 0.73 +0.2
284,470 - GFF252 0.73 +0.2
284,470 - GFF252 0.73 +0.6
284,470 - GFF252 0.73 -0.3
284,470 - GFF252 0.73 +0.2
284,816 - -0.8
284,837 + +0.0
285,326 + GFF253 0.55 -0.6
285,326 + GFF253 0.55 +0.2
285,326 + GFF253 0.55 -0.5
285,326 + GFF253 0.55 -1.7
285,326 + GFF253 0.55 +0.3
285,326 + GFF253 0.55 -0.6
285,326 + GFF253 0.55 +0.2
285,326 + GFF253 0.55 -0.2
285,326 + GFF253 0.55 +0.3
285,326 + GFF253 0.55 -1.8
285,326 + GFF253 0.55 -0.3
285,326 + GFF253 0.55 -0.8
285,327 - GFF253 0.55 -0.1
285,327 - GFF253 0.55 +1.7
285,327 - GFF253 0.55 +0.1
285,327 - GFF253 0.55 -0.5
285,327 - GFF253 0.55 -0.8
285,327 - GFF253 0.55 +0.5
285,327 - GFF253 0.55 -0.7
285,327 - GFF253 0.55 -0.4
285,327 - GFF253 0.55 -1.6
285,327 - GFF253 0.55 -0.4
285,359 + GFF253 0.59 -1.6
285,359 + GFF253 0.59 +0.2
285,359 + GFF253 0.59 +0.9
285,359 + GFF253 0.59 -0.5
285,360 - GFF253 0.59 +0.0
285,360 - GFF253 0.59 +0.1
285,360 - GFF253 0.59 +1.0
285,360 - GFF253 0.59 +0.1
285,360 - GFF253 0.59 +0.2
285,369 - GFF253 0.60 -0.1
285,369 - GFF253 0.60 +0.2
285,369 - GFF253 0.60 -0.0
285,369 - GFF253 0.60 -0.1
285,369 - GFF253 0.60 -0.1
285,653 + +0.5
285,654 - -1.8
285,708 + -0.9
285,708 + +0.6
285,708 + -0.7
285,708 + -1.4
285,708 + +0.0
285,708 + -0.6
285,709 - -0.1
285,709 - +0.6
286,002 + GFF254 0.20 -3.0
286,002 + GFF254 0.20 -0.5
286,137 + GFF254 0.31 -1.4
286,137 + GFF254 0.31 -1.1
286,138 - GFF254 0.31 -1.6
286,138 - GFF254 0.31 -0.8
286,138 - GFF254 0.31 -0.4
286,147 - GFF254 0.32 -1.4
286,147 - GFF254 0.32 +0.4
286,147 - GFF254 0.32 -0.6
286,147 - GFF254 0.32 -0.1
286,147 - GFF254 0.32 -1.6
286,147 - GFF254 0.32 -1.9
286,182 + GFF254 0.35 -0.6
286,182 + GFF254 0.35 +0.9
286,182 + GFF254 0.35 -0.7
286,183 - GFF254 0.35 -0.7
286,185 + GFF254 0.35 -1.9
286,185 + GFF254 0.35 -0.8
286,186 - GFF254 0.35 +0.5
286,186 - GFF254 0.35 +0.0
286,186 - GFF254 0.35 -0.4
286,186 - GFF254 0.35 -1.6
286,380 + GFF254 0.51 -1.1
286,380 + GFF254 0.51 -0.6
286,380 + GFF254 0.51 -1.9
286,381 - GFF254 0.51 -1.2
286,381 - GFF254 0.51 -1.0
286,381 - GFF254 0.51 +1.5
286,393 - GFF254 0.52 -1.2
286,393 - GFF254 0.52 -0.6
286,393 - GFF254 0.52 -0.4
286,393 - GFF254 0.52 -0.7
286,393 - GFF254 0.52 -0.8
286,393 - GFF254 0.52 -1.4
286,525 + GFF254 0.63 -0.4
286,526 - GFF254 0.63 -1.1
286,564 - GFF254 0.66 -0.7
286,572 + GFF254 0.67 +0.4
286,572 + GFF254 0.67 -1.6
286,572 + GFF254 0.67 -0.8
286,572 + GFF254 0.67 +0.3
286,573 - GFF254 0.67 -0.8
286,573 - GFF254 0.67 +0.1
286,573 - GFF254 0.67 -1.7
286,573 - GFF254 0.67 -0.4
286,662 + GFF254 0.74 -1.9
286,663 - GFF254 0.74 +1.2
286,663 - GFF254 0.74 -0.8
286,663 - GFF254 0.74 -1.4

Or see this region's nucleotide sequence