Strain Fitness in Variovorax sp. SCN45 around GFF2363

Experiment: M9 with calcium pantothenate 10 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2362 and GFF2363 are separated by 17 nucleotidesGFF2363 and GFF2364 are separated by 10 nucleotides GFF2362 - PQQ-dependent oxidoreductase, gdhB family, at 415,166 to 416,365 GFF2362 GFF2363 - 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase (EC 4.1.2.52), at 416,383 to 417,198 GFF2363 GFF2364 - Succinate-semialdehyde dehydrogenase [NAD(P)+] (EC 1.2.1.16), at 417,209 to 418,678 GFF2364 Position (kb) 416 417 418Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 415.511 kb on + strand, within GFF2362at 415.511 kb on + strand, within GFF2362at 415.511 kb on + strand, within GFF2362at 415.511 kb on + strand, within GFF2362at 415.511 kb on + strand, within GFF2362at 415.511 kb on + strand, within GFF2362at 415.511 kb on + strand, within GFF2362at 415.511 kb on + strand, within GFF2362at 415.511 kb on + strand, within GFF2362at 415.511 kb on + strand, within GFF2362at 415.512 kb on - strand, within GFF2362at 415.512 kb on - strand, within GFF2362at 415.512 kb on - strand, within GFF2362at 415.512 kb on - strand, within GFF2362at 415.512 kb on - strand, within GFF2362at 415.512 kb on - strand, within GFF2362at 415.512 kb on - strand, within GFF2362at 415.512 kb on - strand, within GFF2362at 415.512 kb on - strand, within GFF2362at 415.512 kb on - strand, within GFF2362at 415.520 kb on + strand, within GFF2362at 415.520 kb on + strand, within GFF2362at 415.520 kb on + strand, within GFF2362at 415.520 kb on + strand, within GFF2362at 415.520 kb on + strand, within GFF2362at 415.520 kb on + strand, within GFF2362at 415.521 kb on - strand, within GFF2362at 415.521 kb on - strand, within GFF2362at 415.700 kb on + strand, within GFF2362at 415.700 kb on + strand, within GFF2362at 415.700 kb on + strand, within GFF2362at 415.700 kb on + strand, within GFF2362at 415.701 kb on - strand, within GFF2362at 415.701 kb on - strand, within GFF2362at 415.701 kb on - strand, within GFF2362at 415.701 kb on - strand, within GFF2362at 415.701 kb on - strand, within GFF2362at 415.701 kb on - strand, within GFF2362at 415.760 kb on + strand, within GFF2362at 415.760 kb on + strand, within GFF2362at 415.761 kb on - strand, within GFF2362at 415.761 kb on - strand, within GFF2362at 415.763 kb on + strand, within GFF2362at 415.763 kb on + strand, within GFF2362at 415.763 kb on + strand, within GFF2362at 415.763 kb on + strand, within GFF2362at 415.764 kb on - strand, within GFF2362at 415.764 kb on - strand, within GFF2362at 415.764 kb on - strand, within GFF2362at 415.851 kb on + strand, within GFF2362at 415.851 kb on + strand, within GFF2362at 415.851 kb on + strand, within GFF2362at 415.851 kb on + strand, within GFF2362at 415.852 kb on - strand, within GFF2362at 415.852 kb on - strand, within GFF2362at 415.852 kb on - strand, within GFF2362at 415.852 kb on - strand, within GFF2362at 415.976 kb on + strand, within GFF2362at 415.976 kb on + strand, within GFF2362at 415.976 kb on + strand, within GFF2362at 415.977 kb on - strand, within GFF2362at 415.977 kb on - strand, within GFF2362at 416.009 kb on + strand, within GFF2362at 416.009 kb on + strand, within GFF2362at 416.114 kb on + strand, within GFF2362at 416.114 kb on + strand, within GFF2362at 416.115 kb on - strand, within GFF2362at 416.115 kb on - strand, within GFF2362at 416.115 kb on - strand, within GFF2362at 416.300 kb on + strandat 416.300 kb on + strandat 416.301 kb on - strandat 416.301 kb on - strandat 416.371 kb on + strandat 416.387 kb on + strandat 416.387 kb on + strandat 416.387 kb on + strandat 416.388 kb on - strandat 416.477 kb on + strand, within GFF2363at 416.528 kb on + strand, within GFF2363at 416.653 kb on + strand, within GFF2363at 416.792 kb on + strand, within GFF2363at 416.793 kb on - strand, within GFF2363at 416.793 kb on - strand, within GFF2363at 417.116 kb on + strand, within GFF2363at 417.116 kb on + strand, within GFF2363at 417.116 kb on + strand, within GFF2363at 417.116 kb on + strand, within GFF2363at 417.116 kb on + strand, within GFF2363at 417.117 kb on - strandat 417.117 kb on - strandat 417.117 kb on - strandat 417.117 kb on - strandat 417.117 kb on - strandat 417.117 kb on - strandat 417.234 kb on + strandat 417.234 kb on + strandat 417.234 kb on + strandat 417.235 kb on - strandat 417.235 kb on - strandat 417.235 kb on - strandat 417.235 kb on - strandat 417.235 kb on - strandat 417.249 kb on + strandat 417.250 kb on - strandat 417.414 kb on + strand, within GFF2364at 417.415 kb on - strand, within GFF2364at 417.564 kb on + strand, within GFF2364at 417.713 kb on + strand, within GFF2364at 417.713 kb on + strand, within GFF2364at 417.713 kb on + strand, within GFF2364at 417.713 kb on + strand, within GFF2364at 417.714 kb on - strand, within GFF2364

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL
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415,511 + GFF2362 0.29 -0.9
415,511 + GFF2362 0.29 -0.1
415,511 + GFF2362 0.29 -1.6
415,511 + GFF2362 0.29 -0.4
415,511 + GFF2362 0.29 +0.0
415,511 + GFF2362 0.29 -0.5
415,511 + GFF2362 0.29 +0.0
415,511 + GFF2362 0.29 +0.1
415,511 + GFF2362 0.29 +0.0
415,511 + GFF2362 0.29 -0.2
415,512 - GFF2362 0.29 +0.2
415,512 - GFF2362 0.29 +0.8
415,512 - GFF2362 0.29 +0.4
415,512 - GFF2362 0.29 -1.1
415,512 - GFF2362 0.29 +0.3
415,512 - GFF2362 0.29 -2.8
415,512 - GFF2362 0.29 +0.2
415,512 - GFF2362 0.29 -0.5
415,512 - GFF2362 0.29 -0.1
415,512 - GFF2362 0.29 -0.0
415,520 + GFF2362 0.29 +0.6
415,520 + GFF2362 0.29 +0.1
415,520 + GFF2362 0.29 -0.5
415,520 + GFF2362 0.29 -1.0
415,520 + GFF2362 0.29 +0.0
415,520 + GFF2362 0.29 +1.1
415,521 - GFF2362 0.30 -1.9
415,521 - GFF2362 0.30 -0.6
415,700 + GFF2362 0.45 +0.2
415,700 + GFF2362 0.45 -0.2
415,700 + GFF2362 0.45 -0.1
415,700 + GFF2362 0.45 -0.7
415,701 - GFF2362 0.45 -0.6
415,701 - GFF2362 0.45 +1.8
415,701 - GFF2362 0.45 +0.0
415,701 - GFF2362 0.45 -0.1
415,701 - GFF2362 0.45 -0.9
415,701 - GFF2362 0.45 +0.6
415,760 + GFF2362 0.49 +0.0
415,760 + GFF2362 0.49 +1.3
415,761 - GFF2362 0.50 -0.7
415,761 - GFF2362 0.50 +0.9
415,763 + GFF2362 0.50 +0.1
415,763 + GFF2362 0.50 +0.4
415,763 + GFF2362 0.50 -2.6
415,763 + GFF2362 0.50 -1.1
415,764 - GFF2362 0.50 +1.2
415,764 - GFF2362 0.50 +0.5
415,764 - GFF2362 0.50 -1.1
415,851 + GFF2362 0.57 -1.4
415,851 + GFF2362 0.57 +1.1
415,851 + GFF2362 0.57 -0.6
415,851 + GFF2362 0.57 +0.6
415,852 - GFF2362 0.57 +1.0
415,852 - GFF2362 0.57 -0.2
415,852 - GFF2362 0.57 +0.7
415,852 - GFF2362 0.57 -0.0
415,976 + GFF2362 0.68 -1.4
415,976 + GFF2362 0.68 -0.2
415,976 + GFF2362 0.68 +0.4
415,977 - GFF2362 0.68 +1.8
415,977 - GFF2362 0.68 +0.5
416,009 + GFF2362 0.70 -0.0
416,009 + GFF2362 0.70 +1.2
416,114 + GFF2362 0.79 +0.0
416,114 + GFF2362 0.79 -0.1
416,115 - GFF2362 0.79 +0.2
416,115 - GFF2362 0.79 +0.8
416,115 - GFF2362 0.79 -0.6
416,300 + +0.1
416,300 + -0.6
416,301 - -0.2
416,301 - -1.6
416,371 + -0.1
416,387 + -1.4
416,387 + -0.6
416,387 + +0.3
416,388 - -0.2
416,477 + GFF2363 0.12 +0.3
416,528 + GFF2363 0.18 -0.6
416,653 + GFF2363 0.33 +0.6
416,792 + GFF2363 0.50 -1.1
416,793 - GFF2363 0.50 +0.2
416,793 - GFF2363 0.50 -0.0
417,116 + GFF2363 0.90 -0.7
417,116 + GFF2363 0.90 -2.0
417,116 + GFF2363 0.90 -0.3
417,116 + GFF2363 0.90 -0.6
417,116 + GFF2363 0.90 -1.4
417,117 - +0.5
417,117 - -0.2
417,117 - -0.0
417,117 - -0.2
417,117 - +0.2
417,117 - -1.1
417,234 + -1.1
417,234 + -0.1
417,234 + -0.7
417,235 - +0.4
417,235 - +0.2
417,235 - -0.0
417,235 - -0.1
417,235 - -0.9
417,249 + -0.2
417,250 - +0.8
417,414 + GFF2364 0.14 -0.0
417,415 - GFF2364 0.14 +0.6
417,564 + GFF2364 0.24 -0.5
417,713 + GFF2364 0.34 -0.7
417,713 + GFF2364 0.34 -2.8
417,713 + GFF2364 0.34 -1.7
417,713 + GFF2364 0.34 -1.2
417,714 - GFF2364 0.34 +0.2

Or see this region's nucleotide sequence