Strain Fitness in Variovorax sp. SCN45 around GFF2035

Experiment: M9 with calcium pantothenate 10 mg/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9 with calcium pantothenate 10 mg/mL
82,246	+		GFF2034	0.27	+0.0
82,246	+		GFF2034	0.27	+0.3
82,444	+		GFF2034	0.47	-0.9
82,444	+		GFF2034	0.47	-1.4
82,444	+		GFF2034	0.47	+0.1
82,444	+		GFF2034	0.47	+0.3
82,445	-		GFF2034	0.47	-0.8
82,445	-		GFF2034	0.47	+1.4
82,445	-		GFF2034	0.47	-0.3
82,445	-		GFF2034	0.47	+0.2
82,445	-		GFF2034	0.47	+0.3
82,445	-		GFF2034	0.47	-2.1
82,445	-		GFF2034	0.47	-0.2
82,445	-		GFF2034	0.47	-1.6
82,603	+		GFF2034	0.63	+0.5
82,603	+		GFF2034	0.63	-0.8
82,603	+		GFF2034	0.63	+0.1
82,621	+		GFF2034	0.65	+0.4
82,622	-		GFF2034	0.65	-0.1
82,622	-		GFF2034	0.65	+1.2
82,622	-		GFF2034	0.65	-0.2
83,078	+				+0.3
83,078	+				-0.3
83,078	+				+0.4
83,079	-				-0.6
83,079	-				-1.0
83,079	-				-1.1
83,286	+		GFF2035	0.26	-0.5
83,287	-		GFF2035	0.26	-0.0
83,287	-		GFF2035	0.26	+0.2
83,874	-		GFF2035	0.74	-0.7
83,874	-		GFF2035	0.74	-0.4
83,874	-		GFF2035	0.74	-0.7
83,889	+		GFF2035	0.75	-0.1
83,889	+		GFF2035	0.75	-0.7
83,889	+		GFF2035	0.75	-0.7
83,889	+		GFF2035	0.75	+0.2
83,889	+		GFF2035	0.75	+0.4
83,889	+		GFF2035	0.75	+0.5
83,890	-		GFF2035	0.76	+0.5
83,890	-		GFF2035	0.76	+0.0
83,890	-		GFF2035	0.76	+0.1
83,890	-		GFF2035	0.76	-2.1
83,890	-		GFF2035	0.76	-0.2
83,890	-		GFF2035	0.76	-0.5
83,901	+		GFF2035	0.76	-0.3
84,048	+		GFF2035	0.89	+0.8
84,048	+		GFF2035	0.89	-0.2
84,048	+		GFF2035	0.89	-0.4
84,048	+		GFF2035	0.89	-0.6
84,048	+		GFF2035	0.89	-0.6
84,048	+		GFF2035	0.89	-0.6
84,048	+		GFF2035	0.89	-0.5
84,048	+		GFF2035	0.89	-1.4
84,048	+		GFF2035	0.89	+0.8
84,049	-		GFF2035	0.89	-2.4
84,049	-		GFF2035	0.89	+0.3
84,049	-		GFF2035	0.89	-0.4
84,049	-		GFF2035	0.89	-0.7
84,049	-		GFF2035	0.89	+1.8
84,049	-		GFF2035	0.89	-0.2
84,049	-		GFF2035	0.89	+0.1
84,049	-		GFF2035	0.89	-0.0
84,049	-		GFF2035	0.89	-1.9
84,049	-		GFF2035	0.89	-0.3
84,049	-		GFF2035	0.89	-0.8
84,049	-		GFF2035	0.89	-1.3
84,049	-		GFF2035	0.89	-2.1
84,049	-		GFF2035	0.89	-0.2
84,049	-		GFF2035	0.89	-0.3
84,049	-		GFF2035	0.89	-1.0
84,049	-		GFF2035	0.89	-0.2
84,184	-				-0.4
84,184	-				-0.9
84,184	-				+0.2
84,184	-				-0.3
84,191	+				-0.5
84,192	-				-0.5
84,524	+		GFF2036	0.19	-0.6
84,525	-		GFF2036	0.19	-0.3
84,536	+		GFF2036	0.20	-0.1
84,536	+		GFF2036	0.20	-0.3
84,536	+		GFF2036	0.20	+0.2
84,536	+		GFF2036	0.20	-0.7
84,537	-		GFF2036	0.20	+0.4
84,537	-		GFF2036	0.20	+0.1
84,938	+		GFF2036	0.58	-0.1
85,073	+		GFF2036	0.71	-0.3
85,073	+		GFF2036	0.71	+0.6
85,073	+		GFF2036	0.71	+0.9
85,074	-		GFF2036	0.71	-0.1
85,074	-		GFF2036	0.71	-0.0