Experiment: M9 with calcium pantothenate 10 mg/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1862 and GFF1863 overlap by 40 nucleotides GFF1863 and GFF1864 are separated by 106 nucleotides
GFF1862 - Adenosine deaminase (EC 3.5.4.4), at 536,407 to 537,468
GFF1862
GFF1863 - Uncharacterized MFS-type transporter, at 537,429 to 538,742
GFF1863
GFF1864 - Transcriptional regulator, LysR family, at 538,849 to 539,802
GFF1864
Position (kb) 537
538
539 Strain fitness (log2 ratio) -1
0
1
2 at 536.429 kb on - strand at 536.429 kb on - strand at 536.644 kb on + strand, within GFF1862 at 536.644 kb on + strand, within GFF1862 at 536.644 kb on + strand, within GFF1862 at 536.644 kb on + strand, within GFF1862 at 536.644 kb on + strand, within GFF1862 at 536.644 kb on + strand, within GFF1862 at 536.644 kb on + strand, within GFF1862 at 536.644 kb on + strand, within GFF1862 at 536.644 kb on + strand, within GFF1862 at 536.644 kb on + strand, within GFF1862 at 536.645 kb on - strand, within GFF1862 at 536.645 kb on - strand, within GFF1862 at 536.647 kb on + strand, within GFF1862 at 536.648 kb on - strand, within GFF1862 at 536.648 kb on - strand, within GFF1862 at 536.648 kb on - strand, within GFF1862 at 536.648 kb on - strand, within GFF1862 at 536.686 kb on + strand, within GFF1862 at 536.686 kb on + strand, within GFF1862 at 536.686 kb on + strand, within GFF1862 at 536.687 kb on - strand, within GFF1862 at 536.704 kb on + strand, within GFF1862 at 537.070 kb on + strand, within GFF1862 at 537.070 kb on + strand, within GFF1862 at 537.070 kb on + strand, within GFF1862 at 537.310 kb on + strand, within GFF1862 at 537.310 kb on + strand, within GFF1862 at 537.311 kb on - strand, within GFF1862 at 537.430 kb on + strand at 537.430 kb on + strand at 537.430 kb on + strand at 537.431 kb on - strand at 537.431 kb on - strand at 537.431 kb on - strand at 537.850 kb on + strand, within GFF1863 at 537.850 kb on + strand, within GFF1863 at 537.851 kb on - strand, within GFF1863 at 538.195 kb on + strand, within GFF1863 at 538.195 kb on + strand, within GFF1863 at 538.195 kb on + strand, within GFF1863 at 538.195 kb on + strand, within GFF1863 at 538.196 kb on - strand, within GFF1863 at 538.196 kb on - strand, within GFF1863 at 538.791 kb on - strand at 538.915 kb on + strand at 538.916 kb on - strand at 538.916 kb on - strand at 539.062 kb on + strand, within GFF1864 at 539.062 kb on + strand, within GFF1864 at 539.062 kb on + strand, within GFF1864 at 539.063 kb on - strand, within GFF1864 at 539.063 kb on - strand, within GFF1864 at 539.063 kb on - strand, within GFF1864 at 539.063 kb on - strand, within GFF1864 at 539.063 kb on - strand, within GFF1864 at 539.326 kb on + strand, within GFF1864 at 539.681 kb on + strand, within GFF1864 at 539.695 kb on + strand, within GFF1864
Per-strain Table
Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL remove 536,429 - -0.2 536,429 - -0.7 536,644 + GFF1862 0.22 -0.5 536,644 + GFF1862 0.22 +0.2 536,644 + GFF1862 0.22 +0.6 536,644 + GFF1862 0.22 +0.0 536,644 + GFF1862 0.22 -0.3 536,644 + GFF1862 0.22 +0.1 536,644 + GFF1862 0.22 -1.4 536,644 + GFF1862 0.22 -1.0 536,644 + GFF1862 0.22 +0.3 536,644 + GFF1862 0.22 -0.8 536,645 - GFF1862 0.22 -0.5 536,645 - GFF1862 0.22 -1.0 536,647 + GFF1862 0.23 +0.5 536,648 - GFF1862 0.23 -0.5 536,648 - GFF1862 0.23 +1.1 536,648 - GFF1862 0.23 -0.2 536,648 - GFF1862 0.23 +0.5 536,686 + GFF1862 0.26 -0.5 536,686 + GFF1862 0.26 -0.8 536,686 + GFF1862 0.26 -1.0 536,687 - GFF1862 0.26 -0.2 536,704 + GFF1862 0.28 -0.2 537,070 + GFF1862 0.62 +0.2 537,070 + GFF1862 0.62 +0.4 537,070 + GFF1862 0.62 +0.3 537,310 + GFF1862 0.85 +0.2 537,310 + GFF1862 0.85 -0.3 537,311 - GFF1862 0.85 +1.2 537,430 + -0.1 537,430 + -0.4 537,430 + +0.3 537,431 - -0.0 537,431 - -0.1 537,431 - +0.9 537,850 + GFF1863 0.32 +0.2 537,850 + GFF1863 0.32 -0.3 537,851 - GFF1863 0.32 -0.2 538,195 + GFF1863 0.58 -1.0 538,195 + GFF1863 0.58 +0.2 538,195 + GFF1863 0.58 +0.5 538,195 + GFF1863 0.58 +0.1 538,196 - GFF1863 0.58 -0.7 538,196 - GFF1863 0.58 +1.5 538,791 - -0.1 538,915 + +0.1 538,916 - +1.8 538,916 - -0.5 539,062 + GFF1864 0.22 -0.3 539,062 + GFF1864 0.22 -0.2 539,062 + GFF1864 0.22 -1.5 539,063 - GFF1864 0.22 -0.2 539,063 - GFF1864 0.22 -0.6 539,063 - GFF1864 0.22 -0.6 539,063 - GFF1864 0.22 -0.5 539,063 - GFF1864 0.22 -0.5 539,326 + GFF1864 0.50 +0.5 539,681 + GFF1864 0.87 +0.3 539,695 + GFF1864 0.89 -0.3
Or see this region's nucleotide sequence