Experiment: M9 with calcium pantothenate 10 mg/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1644 and GFF1645 are separated by 25 nucleotides GFF1645 and GFF1646 are separated by 174 nucleotides GFF1646 and GFF1647 overlap by 49 nucleotides GFF1647 and GFF1648 are separated by 128 nucleotides GFF1648 and GFF1649 are separated by 159 nucleotides
GFF1644 - hypothetical protein, at 284,850 to 285,110
GFF1644
GFF1645 - Sigma factor PvdS, controling pyoverdin biosynthesis, at 285,136 to 285,666
GFF1645
GFF1646 - Acyl-homoserine lactone acylase PvdQ (EC 3.5.1.-), quorum-quenching, at 285,841 to 286,011
GFF1646
GFF1647 - Acyl-homoserine lactone acylase PvdQ (EC 3.5.1.-), quorum-quenching, at 285,963 to 288,191
GFF1647
GFF1648 - Ligand-binding SRPBCC domain protein family, at 288,320 to 288,766
GFF1648
GFF1649 - hypothetical protein, at 288,926 to 289,591
GFF1649
Position (kb) 285
286
287
288
289 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 285.404 kb on + strand, within GFF1645 at 285.404 kb on + strand, within GFF1645 at 285.404 kb on + strand, within GFF1645 at 285.404 kb on + strand, within GFF1645 at 285.405 kb on - strand, within GFF1645 at 285.405 kb on - strand, within GFF1645 at 285.443 kb on + strand, within GFF1645 at 285.479 kb on + strand, within GFF1645 at 285.479 kb on + strand, within GFF1645 at 285.480 kb on - strand, within GFF1645 at 285.533 kb on + strand, within GFF1645 at 285.670 kb on + strand at 285.671 kb on - strand at 285.769 kb on + strand at 285.774 kb on + strand at 285.883 kb on + strand, within GFF1646 at 285.883 kb on + strand, within GFF1646 at 285.883 kb on + strand, within GFF1646 at 285.883 kb on + strand, within GFF1646 at 285.883 kb on + strand, within GFF1646 at 285.883 kb on + strand, within GFF1646 at 285.883 kb on + strand, within GFF1646 at 285.883 kb on + strand, within GFF1646 at 285.884 kb on - strand, within GFF1646 at 285.884 kb on - strand, within GFF1646 at 285.884 kb on - strand, within GFF1646 at 285.884 kb on - strand, within GFF1646 at 285.929 kb on + strand, within GFF1646 at 285.930 kb on - strand, within GFF1646 at 286.028 kb on + strand at 286.028 kb on + strand at 286.028 kb on + strand at 286.029 kb on - strand at 286.029 kb on - strand at 286.029 kb on - strand at 286.029 kb on - strand at 286.042 kb on + strand at 286.042 kb on + strand at 286.042 kb on + strand at 286.042 kb on + strand at 286.042 kb on + strand at 286.042 kb on + strand at 286.042 kb on + strand at 286.042 kb on + strand at 286.042 kb on + strand at 286.043 kb on - strand at 286.043 kb on - strand at 286.043 kb on - strand at 286.043 kb on - strand at 286.075 kb on + strand at 286.075 kb on + strand at 286.076 kb on - strand at 286.187 kb on + strand, within GFF1647 at 286.187 kb on + strand, within GFF1647 at 286.187 kb on + strand, within GFF1647 at 286.188 kb on - strand, within GFF1647 at 286.315 kb on + strand, within GFF1647 at 286.685 kb on - strand, within GFF1647 at 286.708 kb on + strand, within GFF1647 at 286.708 kb on + strand, within GFF1647 at 286.709 kb on - strand, within GFF1647 at 286.709 kb on - strand, within GFF1647 at 286.709 kb on - strand, within GFF1647 at 286.709 kb on - strand, within GFF1647 at 286.709 kb on - strand, within GFF1647 at 287.156 kb on - strand, within GFF1647 at 287.156 kb on - strand, within GFF1647 at 287.255 kb on - strand, within GFF1647 at 287.428 kb on + strand, within GFF1647 at 287.429 kb on - strand, within GFF1647 at 287.429 kb on - strand, within GFF1647 at 287.452 kb on + strand, within GFF1647 at 287.650 kb on + strand, within GFF1647 at 287.686 kb on + strand, within GFF1647 at 287.686 kb on + strand, within GFF1647 at 287.794 kb on + strand, within GFF1647 at 287.795 kb on - strand, within GFF1647 at 287.795 kb on - strand, within GFF1647 at 287.795 kb on - strand, within GFF1647 at 287.795 kb on - strand, within GFF1647 at 287.962 kb on + strand, within GFF1647 at 287.984 kb on - strand at 288.290 kb on - strand at 288.439 kb on - strand, within GFF1648 at 288.519 kb on + strand, within GFF1648 at 288.520 kb on - strand, within GFF1648 at 288.520 kb on - strand, within GFF1648 at 288.552 kb on + strand, within GFF1648 at 288.553 kb on - strand, within GFF1648 at 288.553 kb on - strand, within GFF1648 at 288.574 kb on + strand, within GFF1648 at 288.575 kb on - strand, within GFF1648 at 288.708 kb on + strand, within GFF1648 at 288.807 kb on + strand at 288.808 kb on - strand at 288.883 kb on + strand at 288.883 kb on + strand at 288.884 kb on - strand at 288.983 kb on + strand at 288.983 kb on + strand at 288.983 kb on + strand at 288.983 kb on + strand at 288.983 kb on + strand at 288.983 kb on + strand at 288.984 kb on - strand at 288.984 kb on - strand at 288.984 kb on - strand at 288.984 kb on - strand at 288.984 kb on - strand at 288.984 kb on - strand at 288.984 kb on - strand at 288.984 kb on - strand at 289.158 kb on - strand, within GFF1649
Per-strain Table
Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL remove 285,404 + GFF1645 0.50 +0.2 285,404 + GFF1645 0.50 +0.1 285,404 + GFF1645 0.50 -0.3 285,404 + GFF1645 0.50 -0.2 285,405 - GFF1645 0.51 -0.1 285,405 - GFF1645 0.51 -1.7 285,443 + GFF1645 0.58 +0.5 285,479 + GFF1645 0.65 -1.0 285,479 + GFF1645 0.65 -1.2 285,480 - GFF1645 0.65 +0.9 285,533 + GFF1645 0.75 -0.8 285,670 + -0.2 285,671 - -0.1 285,769 + -0.7 285,774 + -1.0 285,883 + GFF1646 0.25 -0.2 285,883 + GFF1646 0.25 +0.1 285,883 + GFF1646 0.25 -1.1 285,883 + GFF1646 0.25 +0.2 285,883 + GFF1646 0.25 -0.3 285,883 + GFF1646 0.25 +0.2 285,883 + GFF1646 0.25 -2.5 285,883 + GFF1646 0.25 +0.4 285,884 - GFF1646 0.25 +0.4 285,884 - GFF1646 0.25 -0.8 285,884 - GFF1646 0.25 -0.2 285,884 - GFF1646 0.25 -1.4 285,929 + GFF1646 0.51 -0.7 285,930 - GFF1646 0.52 -1.3 286,028 + +0.9 286,028 + -0.0 286,028 + +0.6 286,029 - +0.8 286,029 - +0.5 286,029 - -1.5 286,029 - +0.8 286,042 + -0.1 286,042 + +1.1 286,042 + -0.9 286,042 + -0.0 286,042 + -1.4 286,042 + +0.1 286,042 + +0.6 286,042 + +1.4 286,042 + +0.1 286,043 - -1.2 286,043 - -0.5 286,043 - +0.8 286,043 - -0.7 286,075 + -0.7 286,075 + +0.8 286,076 - -0.2 286,187 + GFF1647 0.10 -0.4 286,187 + GFF1647 0.10 -1.5 286,187 + GFF1647 0.10 -0.1 286,188 - GFF1647 0.10 -1.5 286,315 + GFF1647 0.16 -1.9 286,685 - GFF1647 0.32 +0.0 286,708 + GFF1647 0.33 +0.2 286,708 + GFF1647 0.33 -0.0 286,709 - GFF1647 0.33 -0.5 286,709 - GFF1647 0.33 -0.9 286,709 - GFF1647 0.33 -2.9 286,709 - GFF1647 0.33 +0.4 286,709 - GFF1647 0.33 -0.8 287,156 - GFF1647 0.54 +0.2 287,156 - GFF1647 0.54 -0.6 287,255 - GFF1647 0.58 -0.1 287,428 + GFF1647 0.66 +0.5 287,429 - GFF1647 0.66 -0.5 287,429 - GFF1647 0.66 -0.3 287,452 + GFF1647 0.67 +0.8 287,650 + GFF1647 0.76 -0.2 287,686 + GFF1647 0.77 -0.9 287,686 + GFF1647 0.77 -0.2 287,794 + GFF1647 0.82 +0.0 287,795 - GFF1647 0.82 -0.9 287,795 - GFF1647 0.82 +1.3 287,795 - GFF1647 0.82 -0.5 287,795 - GFF1647 0.82 -0.8 287,962 + GFF1647 0.90 -0.3 287,984 - -0.5 288,290 - -1.6 288,439 - GFF1648 0.27 -0.2 288,519 + GFF1648 0.45 +0.3 288,520 - GFF1648 0.45 -0.1 288,520 - GFF1648 0.45 -0.8 288,552 + GFF1648 0.52 +1.1 288,553 - GFF1648 0.52 -0.7 288,553 - GFF1648 0.52 -0.0 288,574 + GFF1648 0.57 +0.2 288,575 - GFF1648 0.57 -0.0 288,708 + GFF1648 0.87 -0.3 288,807 + +0.5 288,808 - -0.2 288,883 + -0.2 288,883 + -1.8 288,884 - +1.2 288,983 + -0.3 288,983 + -0.1 288,983 + -0.2 288,983 + -0.1 288,983 + +0.4 288,983 + +0.2 288,984 - -0.2 288,984 - +1.1 288,984 - -0.5 288,984 - -1.1 288,984 - +0.2 288,984 - -0.0 288,984 - -1.0 288,984 - -0.4 289,158 - GFF1649 0.35 +0.8
Or see this region's nucleotide sequence