Strain Fitness in Variovorax sp. SCN45 around GFF1520

Experiment: M9 with calcium pantothenate 10 mg/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9 with calcium pantothenate 10 mg/mL
114,103	+		GFF1519	0.20	-1.8
114,103	+		GFF1519	0.20	+0.3
114,202	+		GFF1519	0.30	+0.0
114,203	-		GFF1519	0.30	+0.6
114,203	-		GFF1519	0.30	-0.4
114,203	-		GFF1519	0.30	+0.7
114,313	+		GFF1519	0.41	-0.6
114,313	+		GFF1519	0.41	-0.2
114,313	+		GFF1519	0.41	-0.4
114,476	-		GFF1519	0.58	-0.6
114,709	+		GFF1519	0.81	-1.0
114,709	+		GFF1519	0.81	-0.6
114,710	-		GFF1519	0.81	+0.6
114,884	+				-0.1
114,884	+				+1.1
114,885	-				+0.5
114,997	-				-0.6
115,004	+				-1.1
115,005	-				-0.5
115,005	-				-0.1
115,097	+				+0.0
115,205	+		GFF1520	0.19	-0.6
115,235	+		GFF1520	0.23	-0.8
115,235	+		GFF1520	0.23	+0.5
115,235	+		GFF1520	0.23	-1.2
115,236	-		GFF1520	0.23	-0.2
115,236	-		GFF1520	0.23	+0.8
115,425	-		GFF1520	0.47	+0.3
115,425	-		GFF1520	0.47	-0.6
115,554	-		GFF1520	0.63	-1.5
115,595	+		GFF1520	0.69	-0.4
115,595	+		GFF1520	0.69	-1.2
115,595	+		GFF1520	0.69	-1.0
115,595	+		GFF1520	0.69	-0.0
115,595	+		GFF1520	0.69	-0.0
115,595	+		GFF1520	0.69	-0.6
115,595	+		GFF1520	0.69	-0.3
115,595	+		GFF1520	0.69	-1.9
115,595	+		GFF1520	0.69	-0.9
115,596	-		GFF1520	0.69	-0.3
115,596	-		GFF1520	0.69	-1.8
115,596	-		GFF1520	0.69	-0.1
115,596	-		GFF1520	0.69	-0.2
115,596	-		GFF1520	0.69	-0.4
115,596	-		GFF1520	0.69	-0.1
115,822	-				-0.8
115,822	-				-0.4
116,038	+		GFF1521	0.17	-1.2
116,038	+		GFF1521	0.17	+1.3
116,196	+		GFF1521	0.32	-0.1
116,358	+		GFF1521	0.48	+0.1
116,413	-		GFF1521	0.54	+0.2
116,413	-		GFF1521	0.54	-1.0
116,413	-		GFF1521	0.54	-0.4
116,415	-		GFF1521	0.54	-0.3
116,472	+		GFF1521	0.59	+0.6
116,559	+		GFF1521	0.68	+0.2
116,559	+		GFF1521	0.68	-1.6
116,559	+		GFF1521	0.68	+0.0
116,559	+		GFF1521	0.68	-0.7
116,559	+		GFF1521	0.68	+0.5
116,559	+		GFF1521	0.68	-0.6
116,560	-		GFF1521	0.68	+0.1
116,560	-		GFF1521	0.68	-1.2
116,583	+		GFF1521	0.70	-0.9
116,583	+		GFF1521	0.70	-0.6
116,583	+		GFF1521	0.70	+0.2
116,583	+		GFF1521	0.70	-0.2
116,583	+		GFF1521	0.70	-1.0
116,583	+		GFF1521	0.70	-0.2
116,584	-		GFF1521	0.70	-0.2
116,584	-		GFF1521	0.70	+0.8
116,584	-		GFF1521	0.70	+1.2
116,584	-		GFF1521	0.70	+0.3
116,584	-		GFF1521	0.70	-0.9
116,584	-		GFF1521	0.70	-0.4
116,817	+				-1.1
116,818	-				-0.1