Strain Fitness in Variovorax sp. SCN45 around GFF138

Experiment: M9 with calcium pantothenate 10 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF137 and GFF138 are separated by 135 nucleotidesGFF138 and GFF139 are separated by 16 nucleotides GFF137 - Transcriptional regulator PA4174, LysR family, at 165,515 to 166,492 GFF137 GFF138 - RidA/YER057c/UK114 superfamily, group 7, YjgH-like protein, at 166,628 to 167,032 GFF138 GFF139 - Cyclopropane-fatty-acyl-phospholipid synthase (EC 2.1.1.79), at 167,049 to 168,284 GFF139 Position (kb) 166 167 168Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 165.673 kb on - strand, within GFF137at 165.750 kb on + strand, within GFF137at 165.750 kb on + strand, within GFF137at 165.750 kb on + strand, within GFF137at 165.750 kb on + strand, within GFF137at 165.750 kb on + strand, within GFF137at 165.750 kb on + strand, within GFF137at 165.751 kb on - strand, within GFF137at 165.751 kb on - strand, within GFF137at 165.828 kb on + strand, within GFF137at 165.829 kb on - strand, within GFF137at 165.880 kb on - strand, within GFF137at 165.880 kb on - strand, within GFF137at 165.981 kb on + strand, within GFF137at 165.981 kb on + strand, within GFF137at 165.982 kb on - strand, within GFF137at 165.982 kb on - strand, within GFF137at 165.997 kb on - strand, within GFF137at 165.997 kb on - strand, within GFF137at 166.004 kb on + strand, within GFF137at 166.296 kb on + strand, within GFF137at 166.296 kb on + strand, within GFF137at 166.297 kb on - strand, within GFF137at 166.297 kb on - strand, within GFF137at 166.299 kb on + strand, within GFF137at 166.299 kb on + strand, within GFF137at 166.300 kb on - strand, within GFF137at 166.300 kb on - strand, within GFF137at 166.582 kb on + strandat 166.582 kb on + strandat 166.582 kb on + strandat 166.582 kb on + strandat 166.583 kb on - strandat 166.583 kb on - strandat 166.583 kb on - strandat 166.583 kb on - strandat 166.673 kb on + strand, within GFF138at 166.673 kb on + strand, within GFF138at 166.674 kb on - strand, within GFF138at 167.083 kb on + strandat 167.083 kb on + strandat 167.083 kb on + strandat 167.083 kb on + strandat 167.083 kb on + strandat 167.084 kb on - strandat 167.084 kb on - strandat 167.084 kb on - strandat 167.084 kb on - strandat 167.084 kb on - strandat 167.084 kb on - strandat 167.084 kb on - strandat 167.089 kb on + strandat 167.089 kb on + strandat 167.089 kb on + strandat 167.089 kb on + strandat 167.089 kb on + strandat 167.090 kb on - strandat 167.149 kb on + strandat 167.150 kb on - strandat 167.150 kb on - strandat 167.179 kb on + strand, within GFF139at 167.179 kb on + strand, within GFF139at 167.179 kb on + strand, within GFF139at 167.179 kb on + strand, within GFF139at 167.180 kb on - strand, within GFF139at 167.197 kb on + strand, within GFF139at 167.197 kb on + strand, within GFF139at 167.264 kb on - strand, within GFF139at 167.398 kb on + strand, within GFF139at 167.398 kb on + strand, within GFF139at 167.398 kb on + strand, within GFF139at 167.398 kb on + strand, within GFF139at 167.399 kb on - strand, within GFF139at 167.425 kb on + strand, within GFF139at 167.599 kb on + strand, within GFF139at 167.599 kb on + strand, within GFF139at 167.599 kb on + strand, within GFF139at 167.869 kb on + strand, within GFF139at 167.869 kb on + strand, within GFF139at 167.869 kb on + strand, within GFF139at 167.870 kb on - strand, within GFF139at 167.870 kb on - strand, within GFF139at 167.870 kb on - strand, within GFF139at 167.870 kb on - strand, within GFF139at 167.899 kb on + strand, within GFF139at 167.899 kb on + strand, within GFF139at 167.899 kb on + strand, within GFF139at 167.899 kb on + strand, within GFF139at 167.900 kb on - strand, within GFF139at 167.920 kb on + strand, within GFF139at 167.921 kb on - strand, within GFF139at 167.921 kb on - strand, within GFF139at 167.921 kb on - strand, within GFF139at 167.968 kb on + strand, within GFF139at 167.969 kb on - strand, within GFF139at 167.969 kb on - strand, within GFF139

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL
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165,673 - GFF137 0.16 -0.2
165,750 + GFF137 0.24 -0.6
165,750 + GFF137 0.24 -3.1
165,750 + GFF137 0.24 -0.4
165,750 + GFF137 0.24 -1.3
165,750 + GFF137 0.24 -0.6
165,750 + GFF137 0.24 -0.7
165,751 - GFF137 0.24 -0.5
165,751 - GFF137 0.24 -0.3
165,828 + GFF137 0.32 -0.3
165,829 - GFF137 0.32 -0.1
165,880 - GFF137 0.37 -0.1
165,880 - GFF137 0.37 -0.2
165,981 + GFF137 0.48 +0.6
165,981 + GFF137 0.48 -0.4
165,982 - GFF137 0.48 -1.7
165,982 - GFF137 0.48 +0.7
165,997 - GFF137 0.49 -0.2
165,997 - GFF137 0.49 +0.7
166,004 + GFF137 0.50 -1.3
166,296 + GFF137 0.80 +3.9
166,296 + GFF137 0.80 +0.2
166,297 - GFF137 0.80 +1.4
166,297 - GFF137 0.80 -1.5
166,299 + GFF137 0.80 -0.9
166,299 + GFF137 0.80 +0.6
166,300 - GFF137 0.80 -0.5
166,300 - GFF137 0.80 -0.1
166,582 + +1.3
166,582 + -1.1
166,582 + +1.3
166,582 + -2.3
166,583 - +0.1
166,583 - -2.0
166,583 - +0.3
166,583 - +0.3
166,673 + GFF138 0.11 +0.3
166,673 + GFF138 0.11 -1.2
166,674 - GFF138 0.11 -0.6
167,083 + -0.0
167,083 + +0.3
167,083 + -0.5
167,083 + -2.2
167,083 + +0.0
167,084 - -1.0
167,084 - -0.4
167,084 - +0.2
167,084 - -1.5
167,084 - -0.2
167,084 - +0.2
167,084 - +1.5
167,089 + -0.2
167,089 + -0.1
167,089 + -1.7
167,089 + -1.3
167,089 + -0.7
167,090 - -0.5
167,149 + +0.6
167,150 - +0.2
167,150 - -2.4
167,179 + GFF139 0.11 +0.0
167,179 + GFF139 0.11 -0.1
167,179 + GFF139 0.11 +0.5
167,179 + GFF139 0.11 -0.1
167,180 - GFF139 0.11 -0.3
167,197 + GFF139 0.12 -0.4
167,197 + GFF139 0.12 +2.0
167,264 - GFF139 0.17 -0.9
167,398 + GFF139 0.28 -0.8
167,398 + GFF139 0.28 +0.4
167,398 + GFF139 0.28 +0.0
167,398 + GFF139 0.28 +0.4
167,399 - GFF139 0.28 +0.4
167,425 + GFF139 0.30 -0.2
167,599 + GFF139 0.44 +0.4
167,599 + GFF139 0.44 -0.3
167,599 + GFF139 0.44 -1.4
167,869 + GFF139 0.66 +0.4
167,869 + GFF139 0.66 +1.0
167,869 + GFF139 0.66 -1.0
167,870 - GFF139 0.66 +1.6
167,870 - GFF139 0.66 +0.0
167,870 - GFF139 0.66 -0.2
167,870 - GFF139 0.66 +1.0
167,899 + GFF139 0.69 -0.9
167,899 + GFF139 0.69 -0.6
167,899 + GFF139 0.69 -0.9
167,899 + GFF139 0.69 -0.7
167,900 - GFF139 0.69 +0.0
167,920 + GFF139 0.70 -0.8
167,921 - GFF139 0.71 -0.1
167,921 - GFF139 0.71 +0.9
167,921 - GFF139 0.71 -0.8
167,968 + GFF139 0.74 +2.3
167,969 - GFF139 0.74 -2.2
167,969 - GFF139 0.74 -1.5

Or see this region's nucleotide sequence