Strain Fitness in Variovorax sp. SCN45 around GFF12

Experiment: M9 with calcium pantothenate 10 mg/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9 with calcium pantothenate 10 mg/mL
11,940	-				+0.2
12,166	+		GFF11	0.19	-1.1
12,166	+		GFF11	0.19	+0.1
12,166	+		GFF11	0.19	+1.3
12,167	-		GFF11	0.19	-0.9
12,325	+		GFF11	0.41	-0.3
12,325	+		GFF11	0.41	+0.5
12,326	-		GFF11	0.41	-1.1
12,493	+		GFF11	0.65	-1.1
12,739	+				-0.3
12,739	+				+0.1
12,739	+				-1.1
12,739	+				-0.1
12,739	+				-0.7
12,739	+				+0.0
12,740	-				-0.4
12,740	-				+0.6
12,815	+				-0.9
12,815	+				-0.7
12,815	+				+1.9
12,815	+				-0.3
12,816	-				-0.0
12,816	-				-0.3
12,816	-				+1.5
12,816	-				+0.5
12,816	-				-0.5
12,816	-				+0.1
13,569	-		GFF12	0.59	-1.5
13,569	-		GFF12	0.59	-0.4
13,569	-		GFF12	0.59	-0.1
13,983	-		GFF12	0.89	-1.3
14,287	+				-0.1
14,334	+		GFF14	0.19	+1.3
14,335	-		GFF14	0.19	-0.3
14,370	+		GFF14	0.28	-0.1
14,370	+		GFF14	0.28	-0.1
14,371	-		GFF14	0.28	+0.3
14,371	-		GFF14	0.28	-1.5
14,557	-		GFF14	0.75	-0.5
14,586	+		GFF14	0.82	+0.6
14,628	+				+0.4
14,629	-				-2.3
14,629	-				-0.7
14,682	+				+0.2
14,682	+				-0.1
14,683	-				-0.0
14,683	-				+0.9
14,683	-				-0.5
14,716	-				-0.6
14,755	+				+0.7
14,755	+				+0.5
14,756	-				-0.3
14,756	-				-0.2
14,774	+				-0.2
14,775	-				-0.1
14,836	+				+0.3
14,836	+				-0.7
14,837	-				-0.7
14,837	-				+0.5
14,887	+		GFF15	0.25	-0.5
14,902	+		GFF15	0.30	-0.4