Strain Fitness in Variovorax sp. SCN45 around GFF1180

Experiment: M9 with calcium pantothenate 10 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1179 and GFF1180 are separated by 1 nucleotidesGFF1180 and GFF1181 overlap by 4 nucleotides GFF1179 - no description, at 495,339 to 497,222 GFF1179 GFF1180 - hypothetical protein, at 497,224 to 497,913 GFF1180 GFF1181 - hypothetical protein, at 497,910 to 498,887 GFF1181 Position (kb) 497 498Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 496.258 kb on + strand, within GFF1179at 496.267 kb on + strand, within GFF1179at 496.267 kb on + strand, within GFF1179at 496.267 kb on + strand, within GFF1179at 496.267 kb on + strand, within GFF1179at 496.267 kb on + strand, within GFF1179at 496.267 kb on + strand, within GFF1179at 496.268 kb on - strand, within GFF1179at 496.268 kb on - strand, within GFF1179at 496.268 kb on - strand, within GFF1179at 496.384 kb on + strand, within GFF1179at 496.465 kb on + strand, within GFF1179at 496.466 kb on - strand, within GFF1179at 496.466 kb on - strand, within GFF1179at 496.466 kb on - strand, within GFF1179at 496.576 kb on + strand, within GFF1179at 496.576 kb on + strand, within GFF1179at 496.577 kb on - strand, within GFF1179at 496.646 kb on - strand, within GFF1179at 496.687 kb on + strand, within GFF1179at 496.687 kb on + strand, within GFF1179at 496.687 kb on + strand, within GFF1179at 496.717 kb on + strand, within GFF1179at 496.718 kb on - strand, within GFF1179at 496.847 kb on - strand, within GFF1179at 496.870 kb on + strand, within GFF1179at 496.871 kb on - strand, within GFF1179at 496.871 kb on - strand, within GFF1179at 496.871 kb on - strand, within GFF1179at 496.984 kb on + strand, within GFF1179at 496.984 kb on + strand, within GFF1179at 496.985 kb on - strand, within GFF1179at 497.225 kb on + strandat 497.294 kb on + strand, within GFF1180at 497.294 kb on + strand, within GFF1180at 497.295 kb on - strand, within GFF1180at 497.295 kb on - strand, within GFF1180at 497.295 kb on - strand, within GFF1180at 497.298 kb on + strand, within GFF1180at 497.298 kb on + strand, within GFF1180at 497.298 kb on + strand, within GFF1180at 497.299 kb on - strand, within GFF1180at 497.299 kb on - strand, within GFF1180at 497.299 kb on - strand, within GFF1180at 497.299 kb on - strand, within GFF1180at 497.360 kb on + strand, within GFF1180at 497.360 kb on + strand, within GFF1180at 497.360 kb on + strand, within GFF1180at 497.360 kb on + strand, within GFF1180at 497.360 kb on + strand, within GFF1180at 497.360 kb on + strand, within GFF1180at 497.360 kb on + strand, within GFF1180at 497.360 kb on + strand, within GFF1180at 497.361 kb on - strand, within GFF1180at 497.361 kb on - strand, within GFF1180at 497.361 kb on - strand, within GFF1180at 497.361 kb on - strand, within GFF1180at 497.361 kb on - strand, within GFF1180at 497.361 kb on - strand, within GFF1180at 497.361 kb on - strand, within GFF1180at 497.603 kb on + strand, within GFF1180at 497.603 kb on + strand, within GFF1180at 497.604 kb on - strand, within GFF1180at 497.604 kb on - strand, within GFF1180at 498.072 kb on + strand, within GFF1181at 498.122 kb on + strand, within GFF1181at 498.123 kb on - strand, within GFF1181at 498.127 kb on + strand, within GFF1181at 498.127 kb on + strand, within GFF1181at 498.128 kb on - strand, within GFF1181at 498.128 kb on - strand, within GFF1181at 498.128 kb on - strand, within GFF1181at 498.178 kb on + strand, within GFF1181at 498.179 kb on - strand, within GFF1181at 498.300 kb on + strand, within GFF1181at 498.300 kb on + strand, within GFF1181at 498.300 kb on + strand, within GFF1181at 498.301 kb on - strand, within GFF1181at 498.301 kb on - strand, within GFF1181at 498.301 kb on - strand, within GFF1181at 498.301 kb on - strand, within GFF1181at 498.427 kb on + strand, within GFF1181at 498.465 kb on + strand, within GFF1181at 498.465 kb on + strand, within GFF1181at 498.466 kb on - strand, within GFF1181at 498.556 kb on + strand, within GFF1181at 498.556 kb on + strand, within GFF1181at 498.556 kb on + strand, within GFF1181at 498.556 kb on + strand, within GFF1181at 498.557 kb on - strand, within GFF1181at 498.688 kb on + strand, within GFF1181at 498.689 kb on - strand, within GFF1181at 498.689 kb on - strand, within GFF1181at 498.769 kb on + strand, within GFF1181at 498.769 kb on + strand, within GFF1181at 498.769 kb on + strand, within GFF1181at 498.769 kb on + strand, within GFF1181at 498.770 kb on - strand, within GFF1181at 498.770 kb on - strand, within GFF1181at 498.770 kb on - strand, within GFF1181at 498.770 kb on - strand, within GFF1181at 498.770 kb on - strand, within GFF1181at 498.772 kb on + strand, within GFF1181at 498.772 kb on + strand, within GFF1181at 498.772 kb on + strand, within GFF1181at 498.853 kb on + strandat 498.853 kb on + strandat 498.853 kb on + strandat 498.853 kb on + strandat 498.854 kb on - strandat 498.854 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL
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496,258 + GFF1179 0.49 -1.6
496,267 + GFF1179 0.49 -0.5
496,267 + GFF1179 0.49 -0.5
496,267 + GFF1179 0.49 -0.0
496,267 + GFF1179 0.49 -1.0
496,267 + GFF1179 0.49 +0.0
496,267 + GFF1179 0.49 +0.4
496,268 - GFF1179 0.49 -0.6
496,268 - GFF1179 0.49 -0.8
496,268 - GFF1179 0.49 -0.6
496,384 + GFF1179 0.55 +0.6
496,465 + GFF1179 0.60 -0.1
496,466 - GFF1179 0.60 +0.6
496,466 - GFF1179 0.60 -0.9
496,466 - GFF1179 0.60 +0.1
496,576 + GFF1179 0.66 +0.5
496,576 + GFF1179 0.66 -0.5
496,577 - GFF1179 0.66 -0.2
496,646 - GFF1179 0.69 +2.4
496,687 + GFF1179 0.72 +0.2
496,687 + GFF1179 0.72 -1.1
496,687 + GFF1179 0.72 +0.1
496,717 + GFF1179 0.73 -1.5
496,718 - GFF1179 0.73 -0.3
496,847 - GFF1179 0.80 -0.6
496,870 + GFF1179 0.81 +0.0
496,871 - GFF1179 0.81 -1.8
496,871 - GFF1179 0.81 +0.2
496,871 - GFF1179 0.81 -0.9
496,984 + GFF1179 0.87 -0.0
496,984 + GFF1179 0.87 -1.0
496,985 - GFF1179 0.87 +0.4
497,225 + -1.2
497,294 + GFF1180 0.10 +0.6
497,294 + GFF1180 0.10 -1.6
497,295 - GFF1180 0.10 -0.4
497,295 - GFF1180 0.10 -0.2
497,295 - GFF1180 0.10 -0.1
497,298 + GFF1180 0.11 -0.4
497,298 + GFF1180 0.11 +0.5
497,298 + GFF1180 0.11 +0.2
497,299 - GFF1180 0.11 -0.6
497,299 - GFF1180 0.11 -0.4
497,299 - GFF1180 0.11 -1.0
497,299 - GFF1180 0.11 -0.9
497,360 + GFF1180 0.20 -1.3
497,360 + GFF1180 0.20 -0.1
497,360 + GFF1180 0.20 -0.2
497,360 + GFF1180 0.20 -1.2
497,360 + GFF1180 0.20 +0.6
497,360 + GFF1180 0.20 -0.6
497,360 + GFF1180 0.20 +1.0
497,360 + GFF1180 0.20 -0.8
497,361 - GFF1180 0.20 +0.1
497,361 - GFF1180 0.20 -0.9
497,361 - GFF1180 0.20 +0.2
497,361 - GFF1180 0.20 -1.0
497,361 - GFF1180 0.20 -1.4
497,361 - GFF1180 0.20 -0.5
497,361 - GFF1180 0.20 -1.0
497,603 + GFF1180 0.55 -1.2
497,603 + GFF1180 0.55 -0.2
497,604 - GFF1180 0.55 +0.3
497,604 - GFF1180 0.55 -1.5
498,072 + GFF1181 0.17 +2.9
498,122 + GFF1181 0.22 +0.7
498,123 - GFF1181 0.22 -1.6
498,127 + GFF1181 0.22 +1.4
498,127 + GFF1181 0.22 -0.4
498,128 - GFF1181 0.22 -0.2
498,128 - GFF1181 0.22 -1.4
498,128 - GFF1181 0.22 -0.4
498,178 + GFF1181 0.27 +0.3
498,179 - GFF1181 0.28 -0.3
498,300 + GFF1181 0.40 +0.5
498,300 + GFF1181 0.40 -1.0
498,300 + GFF1181 0.40 -1.0
498,301 - GFF1181 0.40 -0.2
498,301 - GFF1181 0.40 -0.9
498,301 - GFF1181 0.40 -0.3
498,301 - GFF1181 0.40 -0.9
498,427 + GFF1181 0.53 +0.8
498,465 + GFF1181 0.57 -0.4
498,465 + GFF1181 0.57 +0.2
498,466 - GFF1181 0.57 -0.3
498,556 + GFF1181 0.66 -2.9
498,556 + GFF1181 0.66 +0.3
498,556 + GFF1181 0.66 -0.6
498,556 + GFF1181 0.66 -0.4
498,557 - GFF1181 0.66 -0.5
498,688 + GFF1181 0.80 +0.0
498,689 - GFF1181 0.80 +0.2
498,689 - GFF1181 0.80 -1.0
498,769 + GFF1181 0.88 -0.2
498,769 + GFF1181 0.88 +0.0
498,769 + GFF1181 0.88 -0.2
498,769 + GFF1181 0.88 +2.7
498,770 - GFF1181 0.88 -0.8
498,770 - GFF1181 0.88 -0.7
498,770 - GFF1181 0.88 -0.4
498,770 - GFF1181 0.88 +0.2
498,770 - GFF1181 0.88 +0.7
498,772 + GFF1181 0.88 -0.7
498,772 + GFF1181 0.88 -0.5
498,772 + GFF1181 0.88 -1.9
498,853 + -1.7
498,853 + -1.1
498,853 + -0.5
498,853 + +0.5
498,854 - -0.8
498,854 - +0.7

Or see this region's nucleotide sequence