Experiment: M9 with calcium pantothenate 10 mg/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF7384 and GFF7385 are separated by 72 nucleotides GFF7385 and GFF7386 overlap by 4 nucleotides GFF7386 and GFF7387 are separated by 33 nucleotides
GFF7384 - hypothetical protein, at 1,911 to 3,020
GFF7384
GFF7385 - hypothetical protein, at 3,093 to 4,460
GFF7385
GFF7386 - no description, at 4,457 to 5,329
GFF7386
GFF7387 - no description, at 5,363 to 5,500
GFF7387
Position (kb) 3
4
5 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 2.175 kb on + strand, within GFF7384 at 2.223 kb on + strand, within GFF7384 at 2.223 kb on + strand, within GFF7384 at 2.223 kb on + strand, within GFF7384 at 2.937 kb on + strand at 3.090 kb on + strand at 3.091 kb on - strand at 3.136 kb on + strand at 3.136 kb on + strand at 3.136 kb on + strand at 3.180 kb on + strand at 3.180 kb on + strand at 3.181 kb on - strand at 3.181 kb on - strand at 3.181 kb on - strand at 3.249 kb on + strand, within GFF7385 at 3.250 kb on - strand, within GFF7385 at 3.315 kb on + strand, within GFF7385 at 3.316 kb on - strand, within GFF7385 at 3.316 kb on - strand, within GFF7385 at 3.437 kb on - strand, within GFF7385 at 3.498 kb on + strand, within GFF7385 at 3.498 kb on + strand, within GFF7385 at 3.499 kb on - strand, within GFF7385 at 3.538 kb on - strand, within GFF7385 at 3.610 kb on - strand, within GFF7385 at 3.879 kb on - strand, within GFF7385 at 3.885 kb on - strand, within GFF7385 at 3.891 kb on + strand, within GFF7385 at 3.892 kb on - strand, within GFF7385 at 4.667 kb on + strand, within GFF7386 at 4.667 kb on + strand, within GFF7386 at 4.667 kb on + strand, within GFF7386 at 4.717 kb on - strand, within GFF7386 at 4.889 kb on + strand, within GFF7386 at 4.944 kb on - strand, within GFF7386 at 4.944 kb on - strand, within GFF7386 at 5.156 kb on + strand, within GFF7386 at 5.156 kb on + strand, within GFF7386 at 5.157 kb on - strand, within GFF7386
Per-strain Table
Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL remove 2,175 + GFF7384 0.24 -0.1 2,223 + GFF7384 0.28 -1.8 2,223 + GFF7384 0.28 +0.0 2,223 + GFF7384 0.28 -0.0 2,937 + +0.2 3,090 + +0.8 3,091 - +0.3 3,136 + -0.8 3,136 + -0.0 3,136 + +0.1 3,180 + +0.7 3,180 + -0.1 3,181 - -0.2 3,181 - +0.2 3,181 - -0.2 3,249 + GFF7385 0.11 -0.3 3,250 - GFF7385 0.11 +1.4 3,315 + GFF7385 0.16 +0.7 3,316 - GFF7385 0.16 -0.0 3,316 - GFF7385 0.16 +0.2 3,437 - GFF7385 0.25 +2.3 3,498 + GFF7385 0.30 +0.3 3,498 + GFF7385 0.30 +0.6 3,499 - GFF7385 0.30 -0.0 3,538 - GFF7385 0.33 +0.4 3,610 - GFF7385 0.38 -2.9 3,879 - GFF7385 0.57 +0.2 3,885 - GFF7385 0.58 -1.1 3,891 + GFF7385 0.58 -1.0 3,892 - GFF7385 0.58 +0.0 4,667 + GFF7386 0.24 -0.6 4,667 + GFF7386 0.24 -0.3 4,667 + GFF7386 0.24 +0.2 4,717 - GFF7386 0.30 -1.0 4,889 + GFF7386 0.49 -0.4 4,944 - GFF7386 0.56 +0.1 4,944 - GFF7386 0.56 +0.2 5,156 + GFF7386 0.80 +0.0 5,156 + GFF7386 0.80 -0.2 5,157 - GFF7386 0.80 -0.6
Or see this region's nucleotide sequence