Strain Fitness in Variovorax sp. SCN45 around GFF7353

Experiment: M9 with calcium pantothenate 10 mg/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9 with calcium pantothenate 10 mg/mL
1,198	-		GFF7351	0.62	-0.3
1,223	+		GFF7351	0.64	-0.1
1,223	+		GFF7351	0.64	-0.9
1,223	+		GFF7351	0.64	-0.2
1,224	-		GFF7351	0.64	+0.0
1,397	+		GFF7351	0.79	-0.1
1,445	+		GFF7351	0.83	-2.1
1,617	+				-0.4
1,694	+				+0.1
1,694	+				+0.6
1,695	-				-1.2
1,695	-				+0.2
1,716	+				-1.4
1,716	+				+0.9
2,016	-		GFF7352	0.66	+0.3
2,203	+				+0.3
2,362	-		GFF7353	0.23	+0.4
2,395	+		GFF7353	0.28	+1.6
2,437	+		GFF7353	0.33	+1.2
2,437	+		GFF7353	0.33	-0.9
2,437	+		GFF7353	0.33	+0.7
2,437	+		GFF7353	0.33	-0.6
2,437	+		GFF7353	0.33	+1.0
2,438	-		GFF7353	0.33	-0.1
2,438	-		GFF7353	0.33	-0.1
2,611	+		GFF7353	0.56	-1.4
2,612	-		GFF7353	0.56	+0.2
2,632	+		GFF7353	0.59	+0.4
2,777	-		GFF7353	0.78	-0.5
2,777	-		GFF7353	0.78	-2.0
2,915	-				+1.9
2,976	+		GFF7354	0.11	-1.5
2,976	+		GFF7354	0.11	-0.4
2,976	+		GFF7354	0.11	+1.7
2,994	+		GFF7354	0.17	+0.4
2,994	+		GFF7354	0.17	-0.8
3,111	+		GFF7354	0.56	+0.0
3,111	+		GFF7354	0.56	-0.8
3,226	+				+0.5
3,226	+				-0.2
3,227	-				-0.8
3,393	-		GFF7355	0.14	-0.6
3,493	-		GFF7355	0.24	+0.6
3,765	+		GFF7355	0.52	-0.1
3,765	+		GFF7355	0.52	+0.3
3,774	+		GFF7355	0.53	+0.5
3,774	+		GFF7355	0.53	-0.3
3,868	-		GFF7355	0.62	-0.1
3,885	+		GFF7355	0.64	-0.4
3,885	+		GFF7355	0.64	-0.4