Strain Fitness in Variovorax sp. SCN45 around GFF7048

Experiment: M9 with calcium pantothenate 10 mg/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9 with calcium pantothenate 10 mg/mL
8,441	+				+0.7
8,656	+		GFF7047	0.54	-0.6
8,656	+		GFF7047	0.54	+0.7
8,656	+		GFF7047	0.54	-2.1
8,657	-		GFF7047	0.54	-0.7
8,743	+		GFF7047	0.86	+1.5
8,756	-				+0.1
8,779	+				+0.0
8,779	+				-0.3
8,779	+				-0.5
8,779	+				-0.1
8,780	-				+0.4
9,213	+		GFF7048	0.52	-0.3
9,214	-		GFF7048	0.52	-0.7
9,404	+		GFF7048	0.75	-1.3
9,404	+		GFF7048	0.75	-0.5
9,404	+		GFF7048	0.75	+0.0
9,405	-		GFF7048	0.75	-0.8
9,405	-		GFF7048	0.75	-0.4
9,405	-		GFF7048	0.75	-0.3
9,440	+		GFF7048	0.79	-0.2
9,609	+				-1.3
9,807	+		GFF7049	0.37	+1.5
9,949	-		GFF7049	0.68	-1.3
9,978	+		GFF7049	0.74	+0.2
9,978	+		GFF7049	0.74	-0.2
9,978	+		GFF7049	0.74	-0.1
9,978	+		GFF7049	0.74	-0.1
9,978	+		GFF7049	0.74	+1.4
9,979	-		GFF7049	0.75	+0.5
9,979	-		GFF7049	0.75	-0.1
9,979	-		GFF7049	0.75	-1.0
9,979	-		GFF7049	0.75	-2.2
9,979	-		GFF7049	0.75	-0.6
9,979	-		GFF7049	0.75	-0.1
9,979	-		GFF7049	0.75	-1.4
10,092	+				-0.0
10,092	-				-0.8
10,122	+				+0.5
10,122	+				-0.6
10,122	+				+0.0
10,122	+				+0.6
10,122	+				-2.0
10,122	+				+0.5
10,123	-				+0.3
10,123	-				+0.3
10,123	-				-0.1
10,123	-				-0.3
10,123	-				+0.5
10,131	+				+1.0
10,132	-				-0.0
10,132	-				-0.8
10,410	+		GFF7050	0.37	-0.4
10,410	+		GFF7050	0.37	-0.8
10,410	+		GFF7050	0.37	-1.0
10,411	-		GFF7050	0.37	-1.0
10,411	-		GFF7050	0.37	-0.3
10,411	-		GFF7050	0.37	-2.1
10,411	-		GFF7050	0.37	-2.0
10,500	-		GFF7050	0.48	+0.8