Strain Fitness in Variovorax sp. SCN45 around GFF7034

Experiment: M9 with calcium pantothenate 10 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF7033 and GFF7034 overlap by 4 nucleotidesGFF7034 and GFF7035 are separated by 143 nucleotidesGFF7035 and GFF7036 are separated by 9 nucleotides GFF7033 - protein of unknown function DUF427, at 207 to 491 GFF7033 GFF7034 - FIG00538743: hypothetical protein, at 488 to 1,243 GFF7034 GFF7035 - UspA, at 1,387 to 1,827 GFF7035 GFF7036 - LSU rRNA pseudouridine(746) synthase (EC 5.4.99.29) @ tRNA pseudouridine(32) synthase (EC 5.4.99.28), at 1,837 to 2,508 GFF7036 Position (kb) 0 1 2Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 0.098 kb on - strandat 0.098 kb on - strandat 0.102 kb on - strandat 0.102 kb on - strandat 0.102 kb on - strandat 0.143 kb on - strandat 0.276 kb on + strand, within GFF7033at 0.276 kb on + strand, within GFF7033at 0.360 kb on + strand, within GFF7033at 0.360 kb on + strand, within GFF7033at 0.360 kb on + strand, within GFF7033at 0.360 kb on + strand, within GFF7033at 0.361 kb on - strand, within GFF7033at 0.363 kb on + strand, within GFF7033at 0.363 kb on + strand, within GFF7033at 0.363 kb on + strand, within GFF7033at 0.363 kb on + strand, within GFF7033at 0.363 kb on + strand, within GFF7033at 0.364 kb on - strand, within GFF7033at 0.364 kb on - strand, within GFF7033at 0.364 kb on - strand, within GFF7033at 0.408 kb on + strand, within GFF7033at 0.408 kb on + strand, within GFF7033at 0.409 kb on - strand, within GFF7033at 0.409 kb on - strand, within GFF7033at 0.411 kb on + strand, within GFF7033at 0.411 kb on + strand, within GFF7033at 0.411 kb on + strand, within GFF7033at 0.411 kb on + strand, within GFF7033at 0.411 kb on + strand, within GFF7033at 0.411 kb on + strand, within GFF7033at 0.411 kb on + strand, within GFF7033at 0.411 kb on + strand, within GFF7033at 0.412 kb on - strand, within GFF7033at 0.412 kb on - strand, within GFF7033at 0.412 kb on - strand, within GFF7033at 0.412 kb on - strand, within GFF7033at 0.412 kb on - strand, within GFF7033at 0.412 kb on - strand, within GFF7033at 0.560 kb on + strandat 0.560 kb on + strandat 0.561 kb on - strandat 0.561 kb on - strandat 0.561 kb on - strandat 0.779 kb on + strand, within GFF7034at 0.779 kb on + strand, within GFF7034at 0.779 kb on + strand, within GFF7034at 0.780 kb on - strand, within GFF7034at 0.780 kb on - strand, within GFF7034at 0.780 kb on - strand, within GFF7034at 0.780 kb on - strand, within GFF7034at 0.917 kb on + strand, within GFF7034at 0.917 kb on + strand, within GFF7034at 0.917 kb on + strand, within GFF7034at 0.918 kb on - strand, within GFF7034at 0.918 kb on - strand, within GFF7034at 1.297 kb on + strandat 1.297 kb on + strandat 1.297 kb on + strandat 1.297 kb on + strandat 1.297 kb on + strandat 1.297 kb on + strandat 1.297 kb on + strandat 1.297 kb on + strandat 1.297 kb on + strandat 1.297 kb on + strandat 1.298 kb on - strandat 1.510 kb on + strand, within GFF7035at 1.510 kb on + strand, within GFF7035at 1.510 kb on + strand, within GFF7035at 1.510 kb on + strand, within GFF7035at 1.510 kb on + strand, within GFF7035at 1.511 kb on - strand, within GFF7035at 1.511 kb on - strand, within GFF7035at 1.511 kb on - strand, within GFF7035at 1.511 kb on - strand, within GFF7035at 1.511 kb on - strand, within GFF7035at 1.511 kb on - strand, within GFF7035at 1.511 kb on - strand, within GFF7035at 1.537 kb on + strand, within GFF7035at 1.538 kb on - strand, within GFF7035at 1.538 kb on - strand, within GFF7035at 1.558 kb on + strand, within GFF7035at 1.559 kb on - strand, within GFF7035at 1.559 kb on - strand, within GFF7035at 1.559 kb on - strand, within GFF7035at 1.866 kb on + strandat 1.867 kb on - strandat 1.867 kb on - strandat 1.970 kb on + strand, within GFF7036at 1.970 kb on + strand, within GFF7036at 1.970 kb on + strand, within GFF7036

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL
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98 - +0.1
98 - +1.6
102 - -0.2
102 - -0.6
102 - -1.0
143 - +1.0
276 + GFF7033 0.24 -0.9
276 + GFF7033 0.24 -0.8
360 + GFF7033 0.54 -1.7
360 + GFF7033 0.54 -0.1
360 + GFF7033 0.54 +0.3
360 + GFF7033 0.54 +0.3
361 - GFF7033 0.54 +0.7
363 + GFF7033 0.55 +0.0
363 + GFF7033 0.55 -0.1
363 + GFF7033 0.55 -0.9
363 + GFF7033 0.55 -0.5
363 + GFF7033 0.55 -2.8
364 - GFF7033 0.55 -1.1
364 - GFF7033 0.55 +1.5
364 - GFF7033 0.55 -0.4
408 + GFF7033 0.71 -0.3
408 + GFF7033 0.71 +0.0
409 - GFF7033 0.71 +1.1
409 - GFF7033 0.71 +1.5
411 + GFF7033 0.72 -2.7
411 + GFF7033 0.72 +2.8
411 + GFF7033 0.72 +0.5
411 + GFF7033 0.72 +0.8
411 + GFF7033 0.72 -0.2
411 + GFF7033 0.72 -0.2
411 + GFF7033 0.72 -0.3
411 + GFF7033 0.72 +0.0
412 - GFF7033 0.72 -0.4
412 - GFF7033 0.72 +0.3
412 - GFF7033 0.72 -0.5
412 - GFF7033 0.72 -0.6
412 - GFF7033 0.72 -0.5
412 - GFF7033 0.72 +1.0
560 + -0.7
560 + -1.1
561 - +0.5
561 - -0.1
561 - -1.2
779 + GFF7034 0.38 -0.0
779 + GFF7034 0.38 +0.9
779 + GFF7034 0.38 -1.2
780 - GFF7034 0.39 -1.5
780 - GFF7034 0.39 +0.1
780 - GFF7034 0.39 -0.3
780 - GFF7034 0.39 -0.7
917 + GFF7034 0.57 +0.1
917 + GFF7034 0.57 -0.8
917 + GFF7034 0.57 -2.0
918 - GFF7034 0.57 +0.1
918 - GFF7034 0.57 -0.8
1,297 + -0.4
1,297 + -0.2
1,297 + +0.2
1,297 + -0.4
1,297 + +0.8
1,297 + +0.1
1,297 + -0.8
1,297 + -0.2
1,297 + +0.2
1,297 + +0.7
1,298 - +0.2
1,510 + GFF7035 0.28 -0.1
1,510 + GFF7035 0.28 +0.2
1,510 + GFF7035 0.28 +0.5
1,510 + GFF7035 0.28 +0.1
1,510 + GFF7035 0.28 -2.8
1,511 - GFF7035 0.28 +1.2
1,511 - GFF7035 0.28 -0.7
1,511 - GFF7035 0.28 +0.8
1,511 - GFF7035 0.28 +0.0
1,511 - GFF7035 0.28 +0.0
1,511 - GFF7035 0.28 +1.9
1,511 - GFF7035 0.28 -0.3
1,537 + GFF7035 0.34 -0.3
1,538 - GFF7035 0.34 +0.1
1,538 - GFF7035 0.34 -1.0
1,558 + GFF7035 0.39 +0.5
1,559 - GFF7035 0.39 -0.1
1,559 - GFF7035 0.39 -1.1
1,559 - GFF7035 0.39 -0.1
1,866 + +0.8
1,867 - -0.4
1,867 - +0.9
1,970 + GFF7036 0.20 -0.1
1,970 + GFF7036 0.20 -0.3
1,970 + GFF7036 0.20 +0.4

Or see this region's nucleotide sequence