Strain Fitness in Variovorax sp. SCN45 around GFF6809

Experiment: M9 with calcium pantothenate 10 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF6807 and GFF6808 are separated by 41 nucleotidesGFF6808 and GFF6809 are separated by 227 nucleotidesGFF6809 and GFF6810 are separated by 18 nucleotidesGFF6810 and GFF6811 are separated by 119 nucleotides GFF6807 - BUG/TctC family periplasmic protein, at 53,427 to 54,392 GFF6807 GFF6808 - Peroxiredoxin OsmC (EC 1.11.1.15), at 54,434 to 54,874 GFF6808 GFF6809 - Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3), at 55,102 to 56,799 GFF6809 GFF6810 - no description, at 56,818 to 57,300 GFF6810 GFF6811 - hypothetical protein, at 57,420 to 57,941 GFF6811 Position (kb) 55 56 57Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 54.139 kb on + strand, within GFF6807at 54.139 kb on + strand, within GFF6807at 54.139 kb on + strand, within GFF6807at 54.202 kb on + strand, within GFF6807at 54.202 kb on + strand, within GFF6807at 54.202 kb on + strand, within GFF6807at 54.203 kb on - strand, within GFF6807at 54.323 kb on - strandat 54.323 kb on - strandat 54.422 kb on + strandat 54.422 kb on + strandat 54.422 kb on + strandat 54.422 kb on + strandat 54.423 kb on - strandat 54.423 kb on - strandat 54.423 kb on - strandat 54.423 kb on - strandat 54.423 kb on - strandat 54.423 kb on - strandat 54.423 kb on - strandat 54.774 kb on + strand, within GFF6808at 54.780 kb on + strand, within GFF6808at 54.781 kb on - strand, within GFF6808at 54.893 kb on + strandat 54.921 kb on + strandat 54.922 kb on - strandat 54.948 kb on + strandat 54.949 kb on - strandat 54.949 kb on - strandat 54.998 kb on + strandat 55.048 kb on + strandat 55.120 kb on + strandat 55.120 kb on + strandat 55.120 kb on + strandat 55.121 kb on - strandat 55.121 kb on - strandat 55.121 kb on - strandat 55.121 kb on - strandat 55.121 kb on - strandat 55.121 kb on - strandat 55.252 kb on + strandat 55.253 kb on - strandat 55.444 kb on + strand, within GFF6809at 55.444 kb on + strand, within GFF6809at 55.444 kb on + strand, within GFF6809at 55.444 kb on + strand, within GFF6809at 55.444 kb on + strand, within GFF6809at 55.444 kb on + strand, within GFF6809at 55.444 kb on + strand, within GFF6809at 55.445 kb on - strand, within GFF6809at 55.445 kb on - strand, within GFF6809at 55.445 kb on - strand, within GFF6809at 55.445 kb on - strand, within GFF6809at 55.756 kb on + strand, within GFF6809at 55.757 kb on - strand, within GFF6809at 56.072 kb on - strand, within GFF6809at 56.072 kb on - strand, within GFF6809at 56.092 kb on + strand, within GFF6809at 56.092 kb on + strand, within GFF6809at 56.093 kb on - strand, within GFF6809at 56.093 kb on - strand, within GFF6809at 56.093 kb on - strand, within GFF6809at 56.093 kb on - strand, within GFF6809at 56.093 kb on - strand, within GFF6809at 56.093 kb on - strand, within GFF6809at 56.093 kb on - strand, within GFF6809at 56.093 kb on - strand, within GFF6809at 56.093 kb on - strand, within GFF6809at 56.093 kb on - strand, within GFF6809at 56.165 kb on - strand, within GFF6809at 56.165 kb on - strand, within GFF6809at 56.177 kb on - strand, within GFF6809at 56.360 kb on - strand, within GFF6809at 56.458 kb on + strand, within GFF6809at 56.458 kb on + strand, within GFF6809at 56.593 kb on + strand, within GFF6809at 56.594 kb on - strand, within GFF6809at 56.695 kb on + strandat 56.695 kb on + strandat 56.695 kb on + strandat 56.695 kb on + strandat 56.696 kb on - strandat 56.696 kb on - strandat 56.696 kb on - strandat 56.819 kb on + strandat 56.819 kb on + strandat 56.820 kb on - strandat 56.909 kb on + strand, within GFF6810at 56.909 kb on + strand, within GFF6810at 56.909 kb on + strand, within GFF6810at 56.910 kb on - strand, within GFF6810at 56.910 kb on - strand, within GFF6810at 56.910 kb on - strand, within GFF6810at 56.999 kb on + strand, within GFF6810at 57.000 kb on - strand, within GFF6810at 57.108 kb on - strand, within GFF6810at 57.164 kb on + strand, within GFF6810at 57.347 kb on + strandat 57.376 kb on + strandat 57.376 kb on + strandat 57.377 kb on - strandat 57.404 kb on + strandat 57.558 kb on + strand, within GFF6811at 57.558 kb on + strand, within GFF6811at 57.558 kb on + strand, within GFF6811at 57.778 kb on - strand, within GFF6811at 57.778 kb on - strand, within GFF6811at 57.783 kb on + strand, within GFF6811at 57.783 kb on + strand, within GFF6811at 57.784 kb on - strand, within GFF6811at 57.784 kb on - strand, within GFF6811

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL
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54,139 + GFF6807 0.74 -0.8
54,139 + GFF6807 0.74 -0.1
54,139 + GFF6807 0.74 -0.2
54,202 + GFF6807 0.80 +0.7
54,202 + GFF6807 0.80 -0.1
54,202 + GFF6807 0.80 -0.2
54,203 - GFF6807 0.80 -0.1
54,323 - +0.2
54,323 - -1.4
54,422 + -0.6
54,422 + +0.9
54,422 + -0.1
54,422 + +1.5
54,423 - -1.1
54,423 - +0.0
54,423 - +1.5
54,423 - -0.6
54,423 - -0.5
54,423 - -0.1
54,423 - -0.8
54,774 + GFF6808 0.77 -0.1
54,780 + GFF6808 0.78 +0.0
54,781 - GFF6808 0.79 -0.7
54,893 + +0.2
54,921 + -0.7
54,922 - -2.4
54,948 + -0.5
54,949 - +0.1
54,949 - -1.1
54,998 + -0.1
55,048 + +0.1
55,120 + +1.5
55,120 + +1.2
55,120 + +0.3
55,121 - -0.9
55,121 - -0.5
55,121 - +0.7
55,121 - +0.4
55,121 - -0.7
55,121 - +0.3
55,252 + +0.3
55,253 - -0.7
55,444 + GFF6809 0.20 -0.3
55,444 + GFF6809 0.20 -0.4
55,444 + GFF6809 0.20 +0.6
55,444 + GFF6809 0.20 -0.3
55,444 + GFF6809 0.20 -0.4
55,444 + GFF6809 0.20 -1.0
55,444 + GFF6809 0.20 -1.3
55,445 - GFF6809 0.20 -1.0
55,445 - GFF6809 0.20 -0.8
55,445 - GFF6809 0.20 -1.0
55,445 - GFF6809 0.20 +0.2
55,756 + GFF6809 0.39 -0.9
55,757 - GFF6809 0.39 +0.6
56,072 - GFF6809 0.57 -0.1
56,072 - GFF6809 0.57 -0.9
56,092 + GFF6809 0.58 -0.2
56,092 + GFF6809 0.58 -0.5
56,093 - GFF6809 0.58 -1.2
56,093 - GFF6809 0.58 +0.2
56,093 - GFF6809 0.58 +3.3
56,093 - GFF6809 0.58 -0.5
56,093 - GFF6809 0.58 -0.0
56,093 - GFF6809 0.58 +0.9
56,093 - GFF6809 0.58 -0.4
56,093 - GFF6809 0.58 -1.6
56,093 - GFF6809 0.58 +0.7
56,093 - GFF6809 0.58 -1.7
56,165 - GFF6809 0.63 -0.3
56,165 - GFF6809 0.63 -0.5
56,177 - GFF6809 0.63 +1.5
56,360 - GFF6809 0.74 -0.3
56,458 + GFF6809 0.80 -1.7
56,458 + GFF6809 0.80 +0.9
56,593 + GFF6809 0.88 -0.6
56,594 - GFF6809 0.88 -0.0
56,695 + -0.3
56,695 + -0.6
56,695 + -0.3
56,695 + -0.4
56,696 - +0.5
56,696 - +2.2
56,696 - -3.0
56,819 + -1.1
56,819 + -0.9
56,820 - -1.6
56,909 + GFF6810 0.19 +0.2
56,909 + GFF6810 0.19 -0.8
56,909 + GFF6810 0.19 -1.8
56,910 - GFF6810 0.19 +0.1
56,910 - GFF6810 0.19 +0.3
56,910 - GFF6810 0.19 +0.1
56,999 + GFF6810 0.37 -1.1
57,000 - GFF6810 0.38 -0.7
57,108 - GFF6810 0.60 -0.5
57,164 + GFF6810 0.72 +0.2
57,347 + -0.2
57,376 + -1.5
57,376 + +0.4
57,377 - -1.5
57,404 + +1.0
57,558 + GFF6811 0.26 -0.5
57,558 + GFF6811 0.26 -0.5
57,558 + GFF6811 0.26 -0.6
57,778 - GFF6811 0.69 +1.5
57,778 - GFF6811 0.69 -0.4
57,783 + GFF6811 0.70 -2.1
57,783 + GFF6811 0.70 -0.9
57,784 - GFF6811 0.70 -1.0
57,784 - GFF6811 0.70 -0.3

Or see this region's nucleotide sequence