Strain Fitness in Variovorax sp. SCN45 around GFF6451

Experiment: M9 with calcium pantothenate 10 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF6450 and GFF6451 overlap by 4 nucleotidesGFF6451 and GFF6452 are separated by 11 nucleotides GFF6450 - Ethanolamine ammonia-lyase heavy chain (EC 4.3.1.7), at 26,628 to 28,022 GFF6450 GFF6451 - Ethanolamine ammonia-lyase light chain (EC 4.3.1.7), at 28,019 to 28,774 GFF6451 GFF6452 - Putative diheme cytochrome c-553, at 28,786 to 30,180 GFF6452 Position (kb) 28 29Strain fitness (log2 ratio) -2 -1 0 1 2at 27.175 kb on - strand, within GFF6450at 27.175 kb on - strand, within GFF6450at 27.483 kb on + strand, within GFF6450at 27.483 kb on + strand, within GFF6450at 27.483 kb on + strand, within GFF6450at 27.483 kb on + strand, within GFF6450at 27.483 kb on + strand, within GFF6450at 27.483 kb on + strand, within GFF6450at 27.484 kb on - strand, within GFF6450at 27.484 kb on - strand, within GFF6450at 27.484 kb on - strand, within GFF6450at 27.484 kb on - strand, within GFF6450at 27.484 kb on - strand, within GFF6450at 27.484 kb on - strand, within GFF6450at 27.565 kb on - strand, within GFF6450at 27.582 kb on + strand, within GFF6450at 27.582 kb on + strand, within GFF6450at 27.582 kb on + strand, within GFF6450at 27.631 kb on - strand, within GFF6450at 27.631 kb on - strand, within GFF6450at 27.636 kb on + strand, within GFF6450at 27.723 kb on + strand, within GFF6450at 27.724 kb on - strand, within GFF6450at 27.724 kb on - strand, within GFF6450at 27.841 kb on - strand, within GFF6450at 28.265 kb on + strand, within GFF6451at 28.265 kb on + strand, within GFF6451at 28.266 kb on - strand, within GFF6451at 28.266 kb on - strand, within GFF6451at 28.266 kb on - strand, within GFF6451at 28.266 kb on - strand, within GFF6451at 28.266 kb on - strand, within GFF6451at 28.266 kb on - strand, within GFF6451at 28.297 kb on - strand, within GFF6451at 28.338 kb on - strand, within GFF6451at 28.586 kb on + strand, within GFF6451at 28.586 kb on + strand, within GFF6451at 28.586 kb on + strand, within GFF6451at 28.587 kb on - strand, within GFF6451at 28.648 kb on - strand, within GFF6451at 28.667 kb on + strand, within GFF6451at 28.667 kb on + strand, within GFF6451at 28.667 kb on + strand, within GFF6451at 28.668 kb on - strand, within GFF6451at 28.668 kb on - strand, within GFF6451at 28.668 kb on - strand, within GFF6451at 28.668 kb on - strand, within GFF6451at 28.668 kb on - strand, within GFF6451at 28.772 kb on + strandat 28.773 kb on - strandat 29.126 kb on + strand, within GFF6452at 29.127 kb on - strand, within GFF6452at 29.127 kb on - strand, within GFF6452at 29.264 kb on + strand, within GFF6452at 29.264 kb on + strand, within GFF6452at 29.264 kb on + strand, within GFF6452at 29.264 kb on + strand, within GFF6452at 29.265 kb on - strand, within GFF6452at 29.265 kb on - strand, within GFF6452at 29.265 kb on - strand, within GFF6452at 29.445 kb on - strand, within GFF6452at 29.533 kb on - strand, within GFF6452at 29.570 kb on + strand, within GFF6452at 29.571 kb on - strand, within GFF6452at 29.615 kb on + strand, within GFF6452at 29.634 kb on - strand, within GFF6452

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL
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27,175 - GFF6450 0.39 -0.5
27,175 - GFF6450 0.39 +0.6
27,483 + GFF6450 0.61 +0.3
27,483 + GFF6450 0.61 -0.2
27,483 + GFF6450 0.61 +0.5
27,483 + GFF6450 0.61 -0.4
27,483 + GFF6450 0.61 +1.3
27,483 + GFF6450 0.61 +0.3
27,484 - GFF6450 0.61 -1.0
27,484 - GFF6450 0.61 +0.4
27,484 - GFF6450 0.61 -0.6
27,484 - GFF6450 0.61 -0.4
27,484 - GFF6450 0.61 -1.4
27,484 - GFF6450 0.61 -0.3
27,565 - GFF6450 0.67 -1.8
27,582 + GFF6450 0.68 +0.9
27,582 + GFF6450 0.68 +0.4
27,582 + GFF6450 0.68 +0.5
27,631 - GFF6450 0.72 -1.1
27,631 - GFF6450 0.72 +1.9
27,636 + GFF6450 0.72 +0.2
27,723 + GFF6450 0.78 +0.4
27,724 - GFF6450 0.79 +0.7
27,724 - GFF6450 0.79 +0.6
27,841 - GFF6450 0.87 -0.1
28,265 + GFF6451 0.33 +0.1
28,265 + GFF6451 0.33 +0.9
28,266 - GFF6451 0.33 +0.0
28,266 - GFF6451 0.33 -1.8
28,266 - GFF6451 0.33 +0.5
28,266 - GFF6451 0.33 -0.8
28,266 - GFF6451 0.33 -2.2
28,266 - GFF6451 0.33 +0.8
28,297 - GFF6451 0.37 +0.0
28,338 - GFF6451 0.42 +0.4
28,586 + GFF6451 0.75 -2.5
28,586 + GFF6451 0.75 +0.7
28,586 + GFF6451 0.75 +0.5
28,587 - GFF6451 0.75 -1.2
28,648 - GFF6451 0.83 -0.2
28,667 + GFF6451 0.86 +1.1
28,667 + GFF6451 0.86 -1.4
28,667 + GFF6451 0.86 -0.3
28,668 - GFF6451 0.86 +0.0
28,668 - GFF6451 0.86 -0.4
28,668 - GFF6451 0.86 +0.2
28,668 - GFF6451 0.86 -2.2
28,668 - GFF6451 0.86 +0.9
28,772 + -0.0
28,773 - +0.0
29,126 + GFF6452 0.24 +0.2
29,127 - GFF6452 0.24 -1.6
29,127 - GFF6452 0.24 +0.3
29,264 + GFF6452 0.34 +0.4
29,264 + GFF6452 0.34 +1.3
29,264 + GFF6452 0.34 -0.8
29,264 + GFF6452 0.34 -0.1
29,265 - GFF6452 0.34 -0.3
29,265 - GFF6452 0.34 +0.1
29,265 - GFF6452 0.34 +1.0
29,445 - GFF6452 0.47 -1.5
29,533 - GFF6452 0.54 +1.5
29,570 + GFF6452 0.56 -1.6
29,571 - GFF6452 0.56 -0.1
29,615 + GFF6452 0.59 +1.5
29,634 - GFF6452 0.61 -0.2

Or see this region's nucleotide sequence