Strain Fitness in Variovorax sp. SCN45 around GFF6354

Experiment: M9 with calcium pantothenate 10 mg/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9 with calcium pantothenate 10 mg/mL
18,876	+		GFF6353	0.60	-1.1
18,877	-		GFF6353	0.60	+0.1
18,877	-		GFF6353	0.60	+0.5
19,426	+				-1.4
19,427	-				-0.8
19,557	-				+0.1
19,562	+				+0.1
19,905	-		GFF6354	0.34	+1.5
20,039	+		GFF6354	0.44	+0.4
20,214	-		GFF6354	0.57	-0.4
20,214	-		GFF6354	0.57	-0.0
20,214	-		GFF6354	0.57	-1.8
20,617	+		GFF6354	0.86	+0.8
20,643	-		GFF6354	0.88	-2.2
20,678	+				+0.6
20,678	+				-0.1
20,678	+				+0.9
20,690	+				-0.5
20,691	-				-0.4
20,726	+				-0.4
20,726	+				-0.9
20,727	-				-0.2
20,727	-				-1.8
20,727	-				-0.2
20,902	-				-0.9
20,915	+				-0.3
20,942	+				+0.1
20,943	-				+0.4
20,959	+				-0.3
20,959	+				-0.3
20,962	+				-0.4
20,980	-				-1.1
20,990	+				-0.7
20,991	-				-0.5
21,064	-		GFF6355	0.17	-0.6
21,276	+		GFF6355	0.58	-0.3
21,521	+				-1.7
21,521	+				+0.9
21,523	+				-2.3
21,523	+				+0.7
21,612	-				+0.1
21,771	-		GFF6356	0.36	-0.1