Experiment: M9 with calcium pantothenate 10 mg/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF625 and GFF626 are separated by 32 nucleotides GFF626 and GFF627 overlap by 4 nucleotides
GFF625 - Efflux transport system, outer membrane factor (OMF) lipoprotein, at 671,856 to 673,421
GFF625
GFF626 - CzcABC family efflux RND transporter, transmembrane protein, at 673,454 to 676,582
GFF626
GFF627 - Secretion protein HlyD, at 676,579 to 677,751
GFF627
Position (kb) 673
674
675
676
677 Strain fitness (log2 ratio) -2
-1
0
1 at 672.647 kb on - strand, within GFF625 at 672.784 kb on + strand, within GFF625 at 672.785 kb on - strand, within GFF625 at 672.785 kb on - strand, within GFF625 at 672.811 kb on + strand, within GFF625 at 672.812 kb on - strand, within GFF625 at 672.812 kb on - strand, within GFF625 at 672.907 kb on + strand, within GFF625 at 672.907 kb on + strand, within GFF625 at 672.908 kb on - strand, within GFF625 at 673.048 kb on + strand, within GFF625 at 673.334 kb on - strand at 675.096 kb on + strand, within GFF626 at 675.096 kb on + strand, within GFF626 at 675.097 kb on - strand, within GFF626 at 675.325 kb on + strand, within GFF626 at 675.326 kb on + strand, within GFF626 at 675.326 kb on + strand, within GFF626 at 675.326 kb on + strand, within GFF626 at 675.326 kb on + strand, within GFF626 at 675.327 kb on - strand, within GFF626 at 675.327 kb on - strand, within GFF626 at 675.625 kb on - strand, within GFF626 at 676.164 kb on + strand, within GFF626 at 676.165 kb on - strand, within GFF626 at 676.165 kb on - strand, within GFF626 at 676.165 kb on - strand, within GFF626 at 676.165 kb on - strand, within GFF626 at 676.170 kb on + strand, within GFF626 at 676.170 kb on + strand, within GFF626 at 676.171 kb on - strand, within GFF626 at 676.272 kb on + strand at 676.677 kb on - strand at 676.677 kb on - strand at 676.754 kb on + strand, within GFF627 at 676.761 kb on - strand, within GFF627 at 677.502 kb on - strand, within GFF627
Per-strain Table
Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL remove 672,647 - GFF625 0.51 -1.2 672,784 + GFF625 0.59 -0.7 672,785 - GFF625 0.59 -0.1 672,785 - GFF625 0.59 -0.0 672,811 + GFF625 0.61 -0.2 672,812 - GFF625 0.61 -0.5 672,812 - GFF625 0.61 +0.0 672,907 + GFF625 0.67 +0.4 672,907 + GFF625 0.67 -0.3 672,908 - GFF625 0.67 -0.6 673,048 + GFF625 0.76 -0.0 673,334 - +0.1 675,096 + GFF626 0.52 +0.6 675,096 + GFF626 0.52 +0.6 675,097 - GFF626 0.53 -1.0 675,325 + GFF626 0.60 +0.3 675,326 + GFF626 0.60 -0.8 675,326 + GFF626 0.60 -0.6 675,326 + GFF626 0.60 -0.3 675,326 + GFF626 0.60 -0.3 675,327 - GFF626 0.60 +0.3 675,327 - GFF626 0.60 -0.6 675,625 - GFF626 0.69 +0.3 676,164 + GFF626 0.87 -0.0 676,165 - GFF626 0.87 -1.6 676,165 - GFF626 0.87 -2.2 676,165 - GFF626 0.87 +0.2 676,165 - GFF626 0.87 -2.2 676,170 + GFF626 0.87 +0.2 676,170 + GFF626 0.87 -0.7 676,171 - GFF626 0.87 -1.6 676,272 + -2.2 676,677 - -0.0 676,677 - -0.9 676,754 + GFF627 0.15 -0.2 676,761 - GFF627 0.16 +0.6 677,502 - GFF627 0.79 +1.1
Or see this region's nucleotide sequence