Strain Fitness in Variovorax sp. SCN45 around GFF6244

Experiment: M9 with calcium pantothenate 10 mg/mL

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGFF6243 and GFF6244 are separated by 75 nucleotidesGFF6244 and GFF6245 are separated by 160 nucleotidesGFF6245 and GFF6246 overlap by 11 nucleotides GFF6243 - Ku domain protein, at 37,322 to 38,293 GFF6243 GFF6244 - Predicted deacylase, at 38,369 to 39,373 GFF6244 GFF6245 - no description, at 39,534 to 39,788 GFF6245 GFF6246 - Ribulose-phosphate 3-epimerase (EC 5.1.3.1), at 39,778 to 40,473 GFF6246 Position (kb) 38 39 40Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 37.903 kb on - strand, within GFF6243at 37.935 kb on + strand, within GFF6243at 37.935 kb on + strand, within GFF6243at 37.935 kb on + strand, within GFF6243at 37.935 kb on + strand, within GFF6243at 37.935 kb on + strand, within GFF6243at 37.935 kb on + strand, within GFF6243at 37.935 kb on + strand, within GFF6243at 37.935 kb on + strand, within GFF6243at 37.935 kb on + strand, within GFF6243at 37.936 kb on - strand, within GFF6243at 37.936 kb on - strand, within GFF6243at 37.936 kb on - strand, within GFF6243at 37.938 kb on + strand, within GFF6243at 37.938 kb on + strand, within GFF6243at 37.939 kb on - strand, within GFF6243at 37.953 kb on + strand, within GFF6243at 38.019 kb on + strand, within GFF6243at 38.055 kb on + strand, within GFF6243at 38.055 kb on + strand, within GFF6243at 38.055 kb on + strand, within GFF6243at 38.056 kb on - strand, within GFF6243at 38.056 kb on - strand, within GFF6243at 38.056 kb on - strand, within GFF6243at 38.056 kb on - strand, within GFF6243at 38.071 kb on - strand, within GFF6243at 38.103 kb on - strand, within GFF6243at 38.103 kb on - strand, within GFF6243at 38.136 kb on + strand, within GFF6243at 38.136 kb on + strand, within GFF6243at 38.136 kb on + strand, within GFF6243at 38.205 kb on + strandat 38.205 kb on + strandat 38.206 kb on - strandat 38.346 kb on + strandat 38.346 kb on + strandat 38.346 kb on + strandat 38.346 kb on + strandat 38.346 kb on + strandat 38.347 kb on - strandat 38.424 kb on + strandat 38.424 kb on + strandat 38.424 kb on + strandat 38.424 kb on + strandat 38.425 kb on - strandat 38.425 kb on - strandat 38.425 kb on - strandat 38.781 kb on + strand, within GFF6244at 38.782 kb on - strand, within GFF6244at 38.782 kb on - strand, within GFF6244at 38.782 kb on - strand, within GFF6244at 38.782 kb on - strand, within GFF6244at 38.782 kb on - strand, within GFF6244at 38.782 kb on - strand, within GFF6244at 38.862 kb on + strand, within GFF6244at 38.862 kb on + strand, within GFF6244at 38.862 kb on + strand, within GFF6244at 38.862 kb on + strand, within GFF6244at 38.862 kb on + strand, within GFF6244at 38.862 kb on + strand, within GFF6244at 38.863 kb on - strand, within GFF6244at 38.863 kb on - strand, within GFF6244at 38.863 kb on - strand, within GFF6244at 38.863 kb on - strand, within GFF6244at 38.863 kb on - strand, within GFF6244at 38.863 kb on - strand, within GFF6244at 39.079 kb on - strand, within GFF6244at 39.079 kb on - strand, within GFF6244at 39.383 kb on - strandat 39.428 kb on - strandat 39.428 kb on - strandat 39.428 kb on - strandat 39.452 kb on + strandat 39.475 kb on + strandat 39.475 kb on + strandat 39.475 kb on + strandat 39.475 kb on + strandat 39.475 kb on + strandat 39.476 kb on - strandat 39.476 kb on - strandat 39.476 kb on - strandat 39.762 kb on + strand, within GFF6245at 39.762 kb on + strand, within GFF6245at 39.833 kb on + strandat 39.834 kb on - strandat 39.834 kb on - strandat 40.193 kb on + strand, within GFF6246at 40.193 kb on + strand, within GFF6246at 40.193 kb on + strand, within GFF6246at 40.193 kb on + strand, within GFF6246at 40.193 kb on + strand, within GFF6246at 40.194 kb on - strand, within GFF6246at 40.194 kb on - strand, within GFF6246at 40.194 kb on - strand, within GFF6246at 40.296 kb on - strand, within GFF6246at 40.346 kb on + strand, within GFF6246at 40.346 kb on + strand, within GFF6246at 40.346 kb on + strand, within GFF6246at 40.346 kb on + strand, within GFF6246at 40.346 kb on + strand, within GFF6246at 40.346 kb on + strand, within GFF6246at 40.347 kb on - strand, within GFF6246at 40.347 kb on - strand, within GFF6246at 40.347 kb on - strand, within GFF6246at 40.347 kb on - strand, within GFF6246at 40.347 kb on - strand, within GFF6246at 40.347 kb on - strand, within GFF6246at 40.347 kb on - strand, within GFF6246

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL
remove
37,903 - GFF6243 0.60 +1.0
37,935 + GFF6243 0.63 -0.6
37,935 + GFF6243 0.63 -0.0
37,935 + GFF6243 0.63 -0.0
37,935 + GFF6243 0.63 +0.5
37,935 + GFF6243 0.63 +1.0
37,935 + GFF6243 0.63 -0.2
37,935 + GFF6243 0.63 -0.8
37,935 + GFF6243 0.63 -0.2
37,935 + GFF6243 0.63 +0.1
37,936 - GFF6243 0.63 +0.5
37,936 - GFF6243 0.63 -0.2
37,936 - GFF6243 0.63 -0.1
37,938 + GFF6243 0.63 -0.1
37,938 + GFF6243 0.63 -1.3
37,939 - GFF6243 0.63 -0.1
37,953 + GFF6243 0.65 -1.3
38,019 + GFF6243 0.72 -0.6
38,055 + GFF6243 0.75 -1.0
38,055 + GFF6243 0.75 +0.3
38,055 + GFF6243 0.75 -1.0
38,056 - GFF6243 0.76 +0.0
38,056 - GFF6243 0.76 +2.3
38,056 - GFF6243 0.76 +1.0
38,056 - GFF6243 0.76 +0.5
38,071 - GFF6243 0.77 -0.4
38,103 - GFF6243 0.80 -0.5
38,103 - GFF6243 0.80 +0.0
38,136 + GFF6243 0.84 -0.2
38,136 + GFF6243 0.84 +0.4
38,136 + GFF6243 0.84 +0.3
38,205 + -1.2
38,205 + -0.5
38,206 - -0.2
38,346 + +0.1
38,346 + +0.9
38,346 + -2.8
38,346 + -0.2
38,346 + +0.7
38,347 - -1.3
38,424 + -0.5
38,424 + -0.3
38,424 + -1.1
38,424 + -0.3
38,425 - -0.8
38,425 - +0.3
38,425 - +0.5
38,781 + GFF6244 0.41 +1.3
38,782 - GFF6244 0.41 +0.0
38,782 - GFF6244 0.41 +0.5
38,782 - GFF6244 0.41 +0.3
38,782 - GFF6244 0.41 -0.5
38,782 - GFF6244 0.41 +0.8
38,782 - GFF6244 0.41 -1.1
38,862 + GFF6244 0.49 -3.0
38,862 + GFF6244 0.49 +0.5
38,862 + GFF6244 0.49 -0.1
38,862 + GFF6244 0.49 -1.5
38,862 + GFF6244 0.49 -0.0
38,862 + GFF6244 0.49 -0.2
38,863 - GFF6244 0.49 -0.4
38,863 - GFF6244 0.49 -1.3
38,863 - GFF6244 0.49 +0.9
38,863 - GFF6244 0.49 +1.4
38,863 - GFF6244 0.49 -0.0
38,863 - GFF6244 0.49 -1.1
39,079 - GFF6244 0.71 -0.5
39,079 - GFF6244 0.71 -1.7
39,383 - -1.8
39,428 - -0.1
39,428 - -0.2
39,428 - +0.6
39,452 + -1.5
39,475 + +0.2
39,475 + -0.4
39,475 + +0.4
39,475 + +1.4
39,475 + -0.8
39,476 - -1.2
39,476 - -0.5
39,476 - +0.2
39,762 + GFF6245 0.89 +1.3
39,762 + GFF6245 0.89 +0.0
39,833 + -2.2
39,834 - +0.3
39,834 - -0.4
40,193 + GFF6246 0.60 -1.3
40,193 + GFF6246 0.60 -0.0
40,193 + GFF6246 0.60 -1.0
40,193 + GFF6246 0.60 -1.1
40,193 + GFF6246 0.60 -1.1
40,194 - GFF6246 0.60 -1.1
40,194 - GFF6246 0.60 +2.3
40,194 - GFF6246 0.60 -0.5
40,296 - GFF6246 0.74 -0.5
40,346 + GFF6246 0.82 +0.1
40,346 + GFF6246 0.82 +0.3
40,346 + GFF6246 0.82 -1.1
40,346 + GFF6246 0.82 +0.8
40,346 + GFF6246 0.82 -0.7
40,346 + GFF6246 0.82 -0.1
40,347 - GFF6246 0.82 -1.2
40,347 - GFF6246 0.82 -1.4
40,347 - GFF6246 0.82 -0.9
40,347 - GFF6246 0.82 +0.3
40,347 - GFF6246 0.82 +1.3
40,347 - GFF6246 0.82 +1.1
40,347 - GFF6246 0.82 -0.3

Or see this region's nucleotide sequence