Strain Fitness in Variovorax sp. SCN45 around GFF6223

Experiment: M9 with calcium pantothenate 10 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF6222 and GFF6223 overlap by 4 nucleotidesGFF6223 and GFF6224 overlap by 4 nucleotides GFF6222 - T6SS component TssM (IcmF/VasK), at 737 to 4,339 GFF6222 GFF6223 - T6SS outer membrane component TssL (ImpK/VasF) / OmpA/MotB domain, at 4,336 to 5,664 GFF6223 GFF6224 - T6SS component TssK (ImpJ/VasE), at 5,661 to 6,992 GFF6224 Position (kb) 4 5 6Strain fitness (log2 ratio) -2 -1 0 1at 3.469 kb on - strand, within GFF6222at 3.483 kb on + strand, within GFF6222at 3.484 kb on - strand, within GFF6222at 3.513 kb on + strand, within GFF6222at 3.514 kb on - strand, within GFF6222at 3.514 kb on - strand, within GFF6222at 3.514 kb on - strand, within GFF6222at 3.514 kb on - strand, within GFF6222at 3.738 kb on + strand, within GFF6222at 3.738 kb on + strand, within GFF6222at 3.912 kb on + strand, within GFF6222at 3.912 kb on + strand, within GFF6222at 3.913 kb on - strand, within GFF6222at 3.927 kb on + strand, within GFF6222at 3.927 kb on + strand, within GFF6222at 3.933 kb on + strand, within GFF6222at 3.933 kb on + strand, within GFF6222at 3.933 kb on + strand, within GFF6222at 3.934 kb on - strand, within GFF6222at 3.934 kb on - strand, within GFF6222at 3.934 kb on - strand, within GFF6222at 4.862 kb on + strand, within GFF6223at 4.862 kb on + strand, within GFF6223at 4.862 kb on + strand, within GFF6223at 4.862 kb on + strand, within GFF6223at 4.862 kb on + strand, within GFF6223at 4.862 kb on + strand, within GFF6223at 4.862 kb on + strand, within GFF6223at 4.862 kb on + strand, within GFF6223at 4.862 kb on + strand, within GFF6223at 4.863 kb on - strand, within GFF6223at 4.863 kb on - strand, within GFF6223at 4.880 kb on + strand, within GFF6223at 4.880 kb on + strand, within GFF6223at 4.881 kb on - strand, within GFF6223at 5.141 kb on + strand, within GFF6223at 5.141 kb on + strand, within GFF6223at 5.141 kb on + strand, within GFF6223at 5.141 kb on + strand, within GFF6223at 5.142 kb on - strand, within GFF6223at 5.327 kb on + strand, within GFF6223at 5.328 kb on - strand, within GFF6223at 5.328 kb on - strand, within GFF6223at 5.785 kb on + strandat 5.786 kb on - strandat 6.133 kb on + strand, within GFF6224at 6.133 kb on + strand, within GFF6224at 6.133 kb on + strand, within GFF6224at 6.133 kb on + strand, within GFF6224at 6.134 kb on - strand, within GFF6224at 6.134 kb on - strand, within GFF6224at 6.134 kb on - strand, within GFF6224at 6.644 kb on - strand, within GFF6224at 6.644 kb on - strand, within GFF6224

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL
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3,469 - GFF6222 0.76 -2.0
3,483 + GFF6222 0.76 +0.2
3,484 - GFF6222 0.76 +0.0
3,513 + GFF6222 0.77 -1.3
3,514 - GFF6222 0.77 -0.7
3,514 - GFF6222 0.77 -0.6
3,514 - GFF6222 0.77 -0.1
3,514 - GFF6222 0.77 -0.2
3,738 + GFF6222 0.83 +0.5
3,738 + GFF6222 0.83 +0.1
3,912 + GFF6222 0.88 -1.0
3,912 + GFF6222 0.88 +0.1
3,913 - GFF6222 0.88 -0.8
3,927 + GFF6222 0.89 -0.2
3,927 + GFF6222 0.89 -0.7
3,933 + GFF6222 0.89 +0.9
3,933 + GFF6222 0.89 +0.1
3,933 + GFF6222 0.89 +0.5
3,934 - GFF6222 0.89 -1.0
3,934 - GFF6222 0.89 +0.2
3,934 - GFF6222 0.89 -0.4
4,862 + GFF6223 0.40 -0.7
4,862 + GFF6223 0.40 -1.7
4,862 + GFF6223 0.40 +0.2
4,862 + GFF6223 0.40 -1.4
4,862 + GFF6223 0.40 -0.9
4,862 + GFF6223 0.40 -0.0
4,862 + GFF6223 0.40 -1.5
4,862 + GFF6223 0.40 -0.3
4,862 + GFF6223 0.40 -0.6
4,863 - GFF6223 0.40 -0.6
4,863 - GFF6223 0.40 +0.0
4,880 + GFF6223 0.41 -1.1
4,880 + GFF6223 0.41 -1.3
4,881 - GFF6223 0.41 +0.6
5,141 + GFF6223 0.61 -0.5
5,141 + GFF6223 0.61 -1.1
5,141 + GFF6223 0.61 +0.5
5,141 + GFF6223 0.61 +0.3
5,142 - GFF6223 0.61 -0.1
5,327 + GFF6223 0.75 +0.3
5,328 - GFF6223 0.75 +0.6
5,328 - GFF6223 0.75 -1.3
5,785 + -0.5
5,786 - -0.1
6,133 + GFF6224 0.35 +0.9
6,133 + GFF6224 0.35 -0.2
6,133 + GFF6224 0.35 +0.3
6,133 + GFF6224 0.35 +0.2
6,134 - GFF6224 0.36 +0.1
6,134 - GFF6224 0.36 -0.4
6,134 - GFF6224 0.36 -0.0
6,644 - GFF6224 0.74 +0.2
6,644 - GFF6224 0.74 +0.5

Or see this region's nucleotide sequence