Strain Fitness in Variovorax sp. SCN45 around GFF5267

Experiment: M9 with calcium pantothenate 10 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF5266 and GFF5267 are separated by 2 nucleotidesGFF5267 and GFF5268 are separated by 141 nucleotidesGFF5268 and GFF5269 are separated by 67 nucleotides GFF5266 - Transaldolase (EC 2.2.1.2), at 133,847 to 134,803 GFF5266 GFF5267 - Glucose-6-phosphate isomerase (EC 5.3.1.9), at 134,806 to 136,359 GFF5267 GFF5268 - protein of unknown function DUF805, at 136,501 to 136,833 GFF5268 GFF5269 - 4-hydroxythreonine-4-phosphate dehydrogenase (EC 1.1.1.262), at 136,901 to 137,950 GFF5269 Position (kb) 134 135 136 137Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 133.837 kb on + strandat 134.180 kb on + strand, within GFF5266at 134.180 kb on + strand, within GFF5266at 134.180 kb on + strand, within GFF5266at 134.180 kb on + strand, within GFF5266at 134.180 kb on + strand, within GFF5266at 134.181 kb on - strand, within GFF5266at 134.181 kb on - strand, within GFF5266at 134.181 kb on - strand, within GFF5266at 134.375 kb on + strand, within GFF5266at 134.375 kb on + strand, within GFF5266at 134.376 kb on - strand, within GFF5266at 134.376 kb on - strand, within GFF5266at 134.376 kb on - strand, within GFF5266at 134.385 kb on - strand, within GFF5266at 134.385 kb on - strand, within GFF5266at 134.385 kb on - strand, within GFF5266at 134.385 kb on - strand, within GFF5266at 134.385 kb on - strand, within GFF5266at 134.385 kb on - strand, within GFF5266at 134.468 kb on + strand, within GFF5266at 134.468 kb on + strand, within GFF5266at 134.468 kb on + strand, within GFF5266at 134.468 kb on + strand, within GFF5266at 134.468 kb on + strand, within GFF5266at 134.468 kb on + strand, within GFF5266at 134.468 kb on + strand, within GFF5266at 134.469 kb on - strand, within GFF5266at 134.469 kb on - strand, within GFF5266at 134.469 kb on - strand, within GFF5266at 134.469 kb on - strand, within GFF5266at 134.474 kb on + strand, within GFF5266at 134.474 kb on + strand, within GFF5266at 134.475 kb on - strand, within GFF5266at 134.475 kb on - strand, within GFF5266at 134.475 kb on - strand, within GFF5266at 134.475 kb on - strand, within GFF5266at 134.477 kb on + strand, within GFF5266at 134.477 kb on + strand, within GFF5266at 134.477 kb on + strand, within GFF5266at 134.477 kb on + strand, within GFF5266at 134.477 kb on + strand, within GFF5266at 134.477 kb on + strand, within GFF5266at 134.477 kb on + strand, within GFF5266at 134.477 kb on + strand, within GFF5266at 134.478 kb on - strand, within GFF5266at 134.478 kb on - strand, within GFF5266at 134.478 kb on - strand, within GFF5266at 134.478 kb on - strand, within GFF5266at 134.672 kb on + strand, within GFF5266at 134.672 kb on + strand, within GFF5266at 134.672 kb on + strand, within GFF5266at 134.673 kb on - strand, within GFF5266at 134.801 kb on + strandat 134.801 kb on + strandat 134.801 kb on + strandat 134.801 kb on + strandat 134.801 kb on + strandat 134.801 kb on + strandat 134.802 kb on - strandat 134.802 kb on - strandat 134.802 kb on - strandat 134.802 kb on - strandat 134.950 kb on + strandat 134.950 kb on + strandat 134.950 kb on + strandat 134.950 kb on + strandat 134.950 kb on + strandat 134.950 kb on + strandat 134.950 kb on + strandat 134.950 kb on + strandat 134.951 kb on - strandat 134.951 kb on - strandat 134.951 kb on - strandat 134.951 kb on - strandat 134.951 kb on - strandat 134.951 kb on - strandat 134.951 kb on - strandat 134.951 kb on - strandat 135.196 kb on + strand, within GFF5267at 135.197 kb on - strand, within GFF5267at 135.590 kb on - strand, within GFF5267at 135.940 kb on + strand, within GFF5267at 135.941 kb on - strand, within GFF5267at 135.941 kb on - strand, within GFF5267at 136.186 kb on + strand, within GFF5267at 136.187 kb on - strand, within GFF5267at 136.187 kb on - strand, within GFF5267at 136.187 kb on - strand, within GFF5267at 136.187 kb on - strand, within GFF5267at 136.382 kb on + strandat 136.383 kb on - strandat 136.383 kb on - strandat 136.383 kb on - strandat 136.386 kb on + strandat 136.387 kb on - strandat 136.387 kb on - strandat 136.387 kb on - strandat 136.387 kb on - strandat 136.419 kb on + strandat 136.425 kb on + strandat 136.425 kb on + strandat 136.426 kb on - strandat 136.426 kb on - strandat 136.426 kb on - strandat 136.426 kb on - strandat 136.426 kb on - strandat 136.451 kb on - strandat 136.498 kb on + strandat 136.498 kb on + strandat 136.499 kb on - strandat 136.540 kb on + strand, within GFF5268at 136.540 kb on + strand, within GFF5268at 136.541 kb on - strand, within GFF5268at 136.541 kb on - strand, within GFF5268at 136.576 kb on + strand, within GFF5268at 136.576 kb on + strand, within GFF5268at 136.576 kb on + strand, within GFF5268at 136.577 kb on - strand, within GFF5268at 136.577 kb on - strand, within GFF5268at 136.577 kb on - strand, within GFF5268at 136.577 kb on - strand, within GFF5268at 136.577 kb on - strand, within GFF5268at 136.636 kb on + strand, within GFF5268at 136.636 kb on + strand, within GFF5268at 136.636 kb on + strand, within GFF5268at 136.636 kb on + strand, within GFF5268at 136.636 kb on + strand, within GFF5268at 136.636 kb on + strand, within GFF5268at 136.636 kb on + strand, within GFF5268at 136.636 kb on + strand, within GFF5268at 136.636 kb on + strand, within GFF5268at 136.636 kb on + strand, within GFF5268at 136.636 kb on + strand, within GFF5268at 136.637 kb on - strand, within GFF5268at 136.637 kb on - strand, within GFF5268at 136.637 kb on - strand, within GFF5268at 136.637 kb on - strand, within GFF5268at 136.637 kb on - strand, within GFF5268at 136.637 kb on - strand, within GFF5268at 136.637 kb on - strand, within GFF5268at 136.637 kb on - strand, within GFF5268at 136.637 kb on - strand, within GFF5268at 136.637 kb on - strand, within GFF5268at 136.637 kb on - strand, within GFF5268at 136.637 kb on - strand, within GFF5268at 136.637 kb on - strand, within GFF5268at 136.637 kb on - strand, within GFF5268at 136.642 kb on + strand, within GFF5268at 136.642 kb on + strand, within GFF5268at 136.642 kb on + strand, within GFF5268at 136.642 kb on + strand, within GFF5268at 136.642 kb on + strand, within GFF5268at 136.642 kb on + strand, within GFF5268at 136.642 kb on + strand, within GFF5268at 136.642 kb on + strand, within GFF5268at 136.642 kb on + strand, within GFF5268at 136.642 kb on + strand, within GFF5268at 136.642 kb on + strand, within GFF5268at 136.642 kb on + strand, within GFF5268at 136.642 kb on + strand, within GFF5268at 136.642 kb on + strand, within GFF5268at 136.642 kb on + strand, within GFF5268at 136.642 kb on + strand, within GFF5268at 136.642 kb on + strand, within GFF5268at 136.642 kb on + strand, within GFF5268at 136.642 kb on + strand, within GFF5268at 136.642 kb on + strand, within GFF5268at 136.642 kb on + strand, within GFF5268at 136.642 kb on + strand, within GFF5268at 136.642 kb on + strand, within GFF5268at 136.642 kb on + strand, within GFF5268at 136.643 kb on - strand, within GFF5268at 136.643 kb on - strand, within GFF5268at 136.643 kb on - strand, within GFF5268at 136.643 kb on - strand, within GFF5268at 136.643 kb on - strand, within GFF5268at 136.643 kb on - strand, within GFF5268at 136.771 kb on + strand, within GFF5268at 136.771 kb on + strand, within GFF5268at 136.771 kb on + strand, within GFF5268at 136.771 kb on + strand, within GFF5268at 136.772 kb on - strand, within GFF5268at 136.772 kb on - strand, within GFF5268at 136.772 kb on - strand, within GFF5268at 136.772 kb on - strand, within GFF5268at 136.772 kb on - strand, within GFF5268at 136.777 kb on + strand, within GFF5268at 136.777 kb on + strand, within GFF5268at 136.777 kb on + strand, within GFF5268at 136.778 kb on - strand, within GFF5268at 137.115 kb on + strand, within GFF5269at 137.115 kb on + strand, within GFF5269at 137.115 kb on + strand, within GFF5269at 137.116 kb on - strand, within GFF5269at 137.116 kb on - strand, within GFF5269at 137.116 kb on - strand, within GFF5269at 137.240 kb on + strand, within GFF5269at 137.240 kb on + strand, within GFF5269at 137.240 kb on + strand, within GFF5269at 137.240 kb on + strand, within GFF5269at 137.240 kb on + strand, within GFF5269at 137.240 kb on + strand, within GFF5269at 137.240 kb on + strand, within GFF5269at 137.241 kb on - strand, within GFF5269at 137.241 kb on - strand, within GFF5269at 137.241 kb on - strand, within GFF5269at 137.241 kb on - strand, within GFF5269

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL
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133,837 + -0.7
134,180 + GFF5266 0.35 -2.7
134,180 + GFF5266 0.35 -1.8
134,180 + GFF5266 0.35 -0.8
134,180 + GFF5266 0.35 +0.1
134,180 + GFF5266 0.35 -1.4
134,181 - GFF5266 0.35 -0.9
134,181 - GFF5266 0.35 -2.2
134,181 - GFF5266 0.35 -1.4
134,375 + GFF5266 0.55 -0.2
134,375 + GFF5266 0.55 -1.4
134,376 - GFF5266 0.55 -0.6
134,376 - GFF5266 0.55 +0.7
134,376 - GFF5266 0.55 +0.1
134,385 - GFF5266 0.56 -1.7
134,385 - GFF5266 0.56 -3.0
134,385 - GFF5266 0.56 -0.9
134,385 - GFF5266 0.56 -1.9
134,385 - GFF5266 0.56 -1.4
134,385 - GFF5266 0.56 -2.7
134,468 + GFF5266 0.65 +0.1
134,468 + GFF5266 0.65 -0.7
134,468 + GFF5266 0.65 -1.7
134,468 + GFF5266 0.65 -2.2
134,468 + GFF5266 0.65 -0.8
134,468 + GFF5266 0.65 -2.4
134,468 + GFF5266 0.65 -1.8
134,469 - GFF5266 0.65 -0.9
134,469 - GFF5266 0.65 -1.2
134,469 - GFF5266 0.65 -1.6
134,469 - GFF5266 0.65 -2.0
134,474 + GFF5266 0.66 -1.2
134,474 + GFF5266 0.66 -0.7
134,475 - GFF5266 0.66 -0.8
134,475 - GFF5266 0.66 +0.1
134,475 - GFF5266 0.66 -1.3
134,475 - GFF5266 0.66 -2.2
134,477 + GFF5266 0.66 -0.6
134,477 + GFF5266 0.66 -0.7
134,477 + GFF5266 0.66 +0.1
134,477 + GFF5266 0.66 -0.9
134,477 + GFF5266 0.66 +0.0
134,477 + GFF5266 0.66 -1.0
134,477 + GFF5266 0.66 -0.8
134,477 + GFF5266 0.66 -1.7
134,478 - GFF5266 0.66 -2.8
134,478 - GFF5266 0.66 +0.7
134,478 - GFF5266 0.66 -0.1
134,478 - GFF5266 0.66 -1.4
134,672 + GFF5266 0.86 -2.3
134,672 + GFF5266 0.86 -1.1
134,672 + GFF5266 0.86 -1.6
134,673 - GFF5266 0.86 -0.4
134,801 + -0.2
134,801 + +0.6
134,801 + +0.1
134,801 + -0.3
134,801 + -0.9
134,801 + -0.4
134,802 - -1.2
134,802 - +0.2
134,802 - -0.4
134,802 - -1.3
134,950 + -4.3
134,950 + -2.4
134,950 + -1.9
134,950 + -1.6
134,950 + -2.4
134,950 + +0.1
134,950 + -1.3
134,950 + -2.4
134,951 - -1.7
134,951 - -1.7
134,951 - -0.9
134,951 - +1.7
134,951 - +0.1
134,951 - -0.9
134,951 - -1.6
134,951 - +0.1
135,196 + GFF5267 0.25 -1.3
135,197 - GFF5267 0.25 +0.1
135,590 - GFF5267 0.50 -1.3
135,940 + GFF5267 0.73 -2.0
135,941 - GFF5267 0.73 -3.4
135,941 - GFF5267 0.73 -2.3
136,186 + GFF5267 0.89 +0.1
136,187 - GFF5267 0.89 -2.0
136,187 - GFF5267 0.89 -1.7
136,187 - GFF5267 0.89 -2.5
136,187 - GFF5267 0.89 -0.3
136,382 + -1.1
136,383 - -1.0
136,383 - -0.5
136,383 - -0.3
136,386 + -0.5
136,387 - -0.7
136,387 - -0.5
136,387 - -0.9
136,387 - -0.5
136,419 + -1.0
136,425 + -2.2
136,425 + +0.4
136,426 - -2.0
136,426 - +0.3
136,426 - -0.9
136,426 - -0.2
136,426 - -1.0
136,451 - -1.1
136,498 + -0.1
136,498 + -1.1
136,499 - -1.9
136,540 + GFF5268 0.12 -0.1
136,540 + GFF5268 0.12 -0.4
136,541 - GFF5268 0.12 +0.7
136,541 - GFF5268 0.12 -0.8
136,576 + GFF5268 0.23 -0.5
136,576 + GFF5268 0.23 -2.2
136,576 + GFF5268 0.23 +0.3
136,577 - GFF5268 0.23 -0.0
136,577 - GFF5268 0.23 -0.2
136,577 - GFF5268 0.23 +1.5
136,577 - GFF5268 0.23 -0.3
136,577 - GFF5268 0.23 -1.5
136,636 + GFF5268 0.41 +0.2
136,636 + GFF5268 0.41 +0.1
136,636 + GFF5268 0.41 +1.7
136,636 + GFF5268 0.41 +0.2
136,636 + GFF5268 0.41 -0.2
136,636 + GFF5268 0.41 +0.0
136,636 + GFF5268 0.41 -0.1
136,636 + GFF5268 0.41 -0.4
136,636 + GFF5268 0.41 +0.6
136,636 + GFF5268 0.41 -1.9
136,636 + GFF5268 0.41 -0.3
136,637 - GFF5268 0.41 -1.6
136,637 - GFF5268 0.41 -0.4
136,637 - GFF5268 0.41 -0.2
136,637 - GFF5268 0.41 -0.6
136,637 - GFF5268 0.41 -0.5
136,637 - GFF5268 0.41 -0.3
136,637 - GFF5268 0.41 -0.4
136,637 - GFF5268 0.41 -0.1
136,637 - GFF5268 0.41 -0.8
136,637 - GFF5268 0.41 -0.3
136,637 - GFF5268 0.41 -0.0
136,637 - GFF5268 0.41 +1.0
136,637 - GFF5268 0.41 +0.3
136,637 - GFF5268 0.41 -1.1
136,642 + GFF5268 0.42 -1.0
136,642 + GFF5268 0.42 +0.1
136,642 + GFF5268 0.42 +0.4
136,642 + GFF5268 0.42 +0.2
136,642 + GFF5268 0.42 -1.4
136,642 + GFF5268 0.42 -0.4
136,642 + GFF5268 0.42 -1.3
136,642 + GFF5268 0.42 +0.7
136,642 + GFF5268 0.42 -0.5
136,642 + GFF5268 0.42 -1.3
136,642 + GFF5268 0.42 -1.4
136,642 + GFF5268 0.42 -0.6
136,642 + GFF5268 0.42 +0.1
136,642 + GFF5268 0.42 +0.3
136,642 + GFF5268 0.42 -0.6
136,642 + GFF5268 0.42 -0.5
136,642 + GFF5268 0.42 -1.0
136,642 + GFF5268 0.42 -0.2
136,642 + GFF5268 0.42 -0.8
136,642 + GFF5268 0.42 -0.6
136,642 + GFF5268 0.42 -1.0
136,642 + GFF5268 0.42 -2.5
136,642 + GFF5268 0.42 +0.6
136,642 + GFF5268 0.42 -0.5
136,643 - GFF5268 0.43 -0.6
136,643 - GFF5268 0.43 -0.0
136,643 - GFF5268 0.43 +1.4
136,643 - GFF5268 0.43 +0.1
136,643 - GFF5268 0.43 +0.7
136,643 - GFF5268 0.43 -0.9
136,771 + GFF5268 0.81 +0.2
136,771 + GFF5268 0.81 +1.2
136,771 + GFF5268 0.81 -1.3
136,771 + GFF5268 0.81 -1.0
136,772 - GFF5268 0.81 -0.0
136,772 - GFF5268 0.81 -2.4
136,772 - GFF5268 0.81 -0.5
136,772 - GFF5268 0.81 +0.7
136,772 - GFF5268 0.81 +0.1
136,777 + GFF5268 0.83 -0.4
136,777 + GFF5268 0.83 -0.3
136,777 + GFF5268 0.83 -1.0
136,778 - GFF5268 0.83 -0.1
137,115 + GFF5269 0.20 -0.4
137,115 + GFF5269 0.20 -0.6
137,115 + GFF5269 0.20 +0.8
137,116 - GFF5269 0.20 +0.6
137,116 - GFF5269 0.20 +0.3
137,116 - GFF5269 0.20 -1.3
137,240 + GFF5269 0.32 +0.2
137,240 + GFF5269 0.32 -0.2
137,240 + GFF5269 0.32 +0.3
137,240 + GFF5269 0.32 -0.4
137,240 + GFF5269 0.32 -0.3
137,240 + GFF5269 0.32 +1.7
137,240 + GFF5269 0.32 +1.1
137,241 - GFF5269 0.32 +2.3
137,241 - GFF5269 0.32 +3.9
137,241 - GFF5269 0.32 +0.5
137,241 - GFF5269 0.32 +1.2

Or see this region's nucleotide sequence