Strain Fitness in Variovorax sp. SCN45 around GFF4940

Experiment: M9 with calcium pantothenate 10 mg/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9 with calcium pantothenate 10 mg/mL
32,337	+				+0.9
32,338	-				+0.3
32,368	+				-0.7
32,368	+				+0.1
32,368	+				+0.3
32,368	+				-0.2
32,368	+				-0.6
32,368	+				-0.8
32,368	+				-0.4
32,368	+				-0.2
32,368	+				+0.4
32,368	+				-1.2
32,368	+				-1.2
32,368	+				-0.1
32,369	-				+0.3
32,369	-				-0.5
32,369	-				+0.4
32,369	-				-0.7
32,542	+		GFF4939	0.21	+0.1
32,542	+		GFF4939	0.21	+1.1
32,543	-		GFF4939	0.21	-1.1
32,543	-		GFF4939	0.21	+0.5
32,543	-		GFF4939	0.21	-0.7
32,543	-		GFF4939	0.21	+0.1
32,543	-		GFF4939	0.21	-0.1
32,726	+		GFF4939	0.50	+1.6
32,726	+		GFF4939	0.50	-1.3
32,726	+		GFF4939	0.50	+0.1
32,726	+		GFF4939	0.50	-0.0
32,727	-		GFF4939	0.50	-1.4
32,727	-		GFF4939	0.50	-0.4
32,727	-		GFF4939	0.50	-0.0
32,727	-		GFF4939	0.50	-0.9
32,771	+		GFF4939	0.57	-1.3
32,771	+		GFF4939	0.57	-0.9
32,771	+		GFF4939	0.57	-0.1
32,772	-		GFF4939	0.58	-1.0
32,772	-		GFF4939	0.58	-0.2
32,772	-		GFF4939	0.58	-0.5
32,789	+		GFF4939	0.60	-0.5
32,789	+		GFF4939	0.60	+0.9
32,789	+		GFF4939	0.60	-0.9
32,789	+		GFF4939	0.60	+0.4
32,789	+		GFF4939	0.60	-0.0
32,790	-		GFF4939	0.60	-0.6
32,790	-		GFF4939	0.60	+1.3
32,790	-		GFF4939	0.60	-0.4
32,790	-		GFF4939	0.60	-0.3
32,790	-		GFF4939	0.60	-0.8
32,790	-		GFF4939	0.60	+2.7
32,905	+		GFF4939	0.79	-0.1
32,905	+		GFF4939	0.79	-1.4
32,906	-		GFF4939	0.79	-1.5
32,906	-		GFF4939	0.79	-0.1
32,906	-		GFF4939	0.79	-0.0
32,906	-		GFF4939	0.79	-0.2
32,906	-		GFF4939	0.79	-0.7
32,906	-		GFF4939	0.79	+0.5
33,046	-				-0.8
33,046	-				-0.0
33,122	-				-0.2
33,122	-				-0.4
33,126	+				-0.7
33,126	+				+0.7
33,126	+				-0.8
33,126	+				+0.5
33,126	+				+0.5
33,126	+				-0.7
33,126	+				-0.4
33,127	-				-0.9
33,127	-				-0.2
33,127	-				+0.1
33,452	+		GFF4940	0.34	-1.0
33,452	+		GFF4940	0.34	+0.3
33,452	+		GFF4940	0.34	+0.0
33,452	+		GFF4940	0.34	-0.7
33,452	+		GFF4940	0.34	-0.5
33,453	-		GFF4940	0.35	-0.2
33,453	-		GFF4940	0.35	-0.1
33,453	-		GFF4940	0.35	-0.9
33,453	-		GFF4940	0.35	-0.4
33,453	-		GFF4940	0.35	+0.9
33,791	+		GFF4940	0.82	-0.1
33,791	+		GFF4940	0.82	+0.6
33,791	+		GFF4940	0.82	-0.6
33,792	-		GFF4940	0.82	-2.8
33,792	-		GFF4940	0.82	-0.4
33,978	+				-0.0
33,978	+				-0.9
33,978	+				+0.3
33,979	-				-0.8
34,122	+		GFF4941	0.43	-0.9
34,122	+		GFF4941	0.43	+1.3
34,122	+		GFF4941	0.43	-0.1
34,122	+		GFF4941	0.43	-0.6
34,122	+		GFF4941	0.43	-0.3
34,122	+		GFF4941	0.43	+0.3
34,123	-		GFF4941	0.43	-0.1
34,130	+		GFF4941	0.45	+1.3
34,131	-		GFF4941	0.45	-1.3
34,131	-		GFF4941	0.45	-0.8
34,131	-		GFF4941	0.45	-0.6
34,267	+		GFF4941	0.77	-0.9
34,268	-		GFF4941	0.78	-1.1
34,314	+		GFF4941	0.89	+0.0