Strain Fitness in Variovorax sp. SCN45 around GFF4812

Experiment: M9 with calcium pantothenate 10 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF4812 and GFF4813 are separated by 360 nucleotides GFF4812 - no description, at 183,389 to 183,856 GFF4812 GFF4813 - Sugar phosphate isomerases/epimerase, at 184,217 to 185,095 GFF4813 Position (kb) 183 184Strain fitness (log2 ratio) -2 -1 0 1 2at 182.423 kb on - strandat 182.432 kb on - strandat 182.432 kb on - strandat 182.434 kb on - strandat 182.824 kb on + strandat 182.824 kb on + strandat 182.824 kb on + strandat 182.825 kb on - strandat 182.825 kb on - strandat 182.825 kb on - strandat 182.825 kb on - strandat 182.825 kb on - strandat 182.872 kb on - strandat 182.878 kb on + strandat 182.878 kb on + strandat 182.879 kb on - strandat 182.885 kb on + strandat 182.886 kb on - strandat 182.886 kb on - strandat 182.953 kb on - strandat 182.953 kb on - strandat 182.953 kb on - strandat 182.960 kb on + strandat 182.961 kb on - strandat 182.961 kb on - strandat 182.961 kb on - strandat 182.961 kb on - strandat 182.961 kb on - strandat 183.021 kb on - strandat 183.021 kb on - strandat 183.095 kb on + strandat 183.290 kb on + strandat 183.291 kb on - strandat 183.344 kb on + strandat 183.344 kb on + strandat 183.345 kb on - strandat 183.447 kb on + strand, within GFF4812at 183.447 kb on + strand, within GFF4812at 183.447 kb on + strand, within GFF4812at 183.447 kb on + strand, within GFF4812at 183.451 kb on + strand, within GFF4812at 183.455 kb on + strand, within GFF4812at 183.455 kb on + strand, within GFF4812at 183.455 kb on + strand, within GFF4812at 183.455 kb on + strand, within GFF4812at 183.455 kb on + strand, within GFF4812at 183.455 kb on + strand, within GFF4812at 183.456 kb on - strand, within GFF4812at 183.456 kb on - strand, within GFF4812at 183.457 kb on + strand, within GFF4812at 183.457 kb on + strand, within GFF4812at 183.457 kb on + strand, within GFF4812at 183.457 kb on + strand, within GFF4812at 183.458 kb on - strand, within GFF4812at 183.458 kb on - strand, within GFF4812at 183.458 kb on - strand, within GFF4812at 183.458 kb on - strand, within GFF4812at 183.499 kb on + strand, within GFF4812at 183.657 kb on + strand, within GFF4812at 183.657 kb on + strand, within GFF4812at 183.658 kb on - strand, within GFF4812at 183.658 kb on - strand, within GFF4812at 183.658 kb on - strand, within GFF4812at 183.684 kb on - strand, within GFF4812at 183.695 kb on + strand, within GFF4812at 183.695 kb on + strand, within GFF4812at 183.695 kb on + strand, within GFF4812at 183.696 kb on - strand, within GFF4812at 183.696 kb on - strand, within GFF4812at 183.696 kb on - strand, within GFF4812at 183.696 kb on - strand, within GFF4812at 183.740 kb on + strand, within GFF4812at 183.744 kb on - strand, within GFF4812at 183.827 kb on + strandat 183.827 kb on + strandat 183.827 kb on + strandat 183.828 kb on - strandat 183.828 kb on - strandat 183.828 kb on - strandat 183.828 kb on - strandat 184.418 kb on - strand, within GFF4813at 184.418 kb on - strand, within GFF4813at 184.437 kb on + strand, within GFF4813at 184.506 kb on + strand, within GFF4813at 184.506 kb on + strand, within GFF4813at 184.507 kb on - strand, within GFF4813at 184.507 kb on - strand, within GFF4813at 184.507 kb on - strand, within GFF4813at 184.507 kb on - strand, within GFF4813at 184.723 kb on - strand, within GFF4813

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL
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182,423 - +0.9
182,432 - -0.2
182,432 - +0.4
182,434 - -1.1
182,824 + -1.0
182,824 + +1.4
182,824 + -0.9
182,825 - -0.4
182,825 - -1.2
182,825 - -0.8
182,825 - +0.1
182,825 - -1.2
182,872 - +1.0
182,878 + +0.1
182,878 + -1.2
182,879 - -1.2
182,885 + +0.1
182,886 - +0.3
182,886 - +0.2
182,953 - -0.0
182,953 - -0.9
182,953 - +0.3
182,960 + +0.5
182,961 - -1.4
182,961 - +1.7
182,961 - -0.9
182,961 - -0.4
182,961 - -0.0
183,021 - +0.4
183,021 - -0.2
183,095 + -1.6
183,290 + +0.2
183,291 - -0.2
183,344 + -0.2
183,344 + +0.6
183,345 - +0.5
183,447 + GFF4812 0.12 -0.2
183,447 + GFF4812 0.12 -0.6
183,447 + GFF4812 0.12 +0.4
183,447 + GFF4812 0.12 -0.1
183,451 + GFF4812 0.13 -0.3
183,455 + GFF4812 0.14 +0.4
183,455 + GFF4812 0.14 -0.4
183,455 + GFF4812 0.14 -1.8
183,455 + GFF4812 0.14 -0.2
183,455 + GFF4812 0.14 +2.0
183,455 + GFF4812 0.14 -1.4
183,456 - GFF4812 0.14 +0.2
183,456 - GFF4812 0.14 +0.5
183,457 + GFF4812 0.15 -0.4
183,457 + GFF4812 0.15 -2.1
183,457 + GFF4812 0.15 +1.4
183,457 + GFF4812 0.15 -0.6
183,458 - GFF4812 0.15 -1.2
183,458 - GFF4812 0.15 -1.0
183,458 - GFF4812 0.15 -1.4
183,458 - GFF4812 0.15 +0.5
183,499 + GFF4812 0.24 -0.4
183,657 + GFF4812 0.57 +0.6
183,657 + GFF4812 0.57 -0.6
183,658 - GFF4812 0.57 -0.6
183,658 - GFF4812 0.57 +1.3
183,658 - GFF4812 0.57 -1.1
183,684 - GFF4812 0.63 +0.1
183,695 + GFF4812 0.65 -0.8
183,695 + GFF4812 0.65 -0.4
183,695 + GFF4812 0.65 -0.2
183,696 - GFF4812 0.66 -0.9
183,696 - GFF4812 0.66 +0.3
183,696 - GFF4812 0.66 -1.4
183,696 - GFF4812 0.66 -0.7
183,740 + GFF4812 0.75 -0.1
183,744 - GFF4812 0.76 +1.2
183,827 + +0.1
183,827 + -1.4
183,827 + -0.2
183,828 - -0.0
183,828 - +0.4
183,828 - +0.5
183,828 - -0.1
184,418 - GFF4813 0.23 +0.1
184,418 - GFF4813 0.23 -0.4
184,437 + GFF4813 0.25 -1.2
184,506 + GFF4813 0.33 +0.6
184,506 + GFF4813 0.33 -0.6
184,507 - GFF4813 0.33 -0.4
184,507 - GFF4813 0.33 -0.8
184,507 - GFF4813 0.33 -1.1
184,507 - GFF4813 0.33 -0.0
184,723 - GFF4813 0.58 -0.5

Or see this region's nucleotide sequence