Strain Fitness in Variovorax sp. SCN45 around GFF478

Experiment: M9 with calcium pantothenate 10 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF477 and GFF478 are separated by 119 nucleotidesGFF478 and GFF479 are separated by 51 nucleotides GFF477 - Transcriptional regulator, LysR family, at 514,907 to 515,806 GFF477 GFF478 - Rrf2-linked NADH-flavin reductase, at 515,926 to 516,543 GFF478 GFF479 - Fumarate hydratase class II (EC 4.2.1.2), at 516,595 to 517,992 GFF479 Position (kb) 515 516 517Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 514.945 kb on + strandat 514.945 kb on + strandat 515.010 kb on + strand, within GFF477at 515.010 kb on + strand, within GFF477at 515.010 kb on + strand, within GFF477at 515.010 kb on + strand, within GFF477at 515.010 kb on + strand, within GFF477at 515.010 kb on + strand, within GFF477at 515.010 kb on + strand, within GFF477at 515.010 kb on + strand, within GFF477at 515.010 kb on + strand, within GFF477at 515.011 kb on - strand, within GFF477at 515.011 kb on - strand, within GFF477at 515.011 kb on - strand, within GFF477at 515.011 kb on - strand, within GFF477at 515.011 kb on - strand, within GFF477at 515.011 kb on - strand, within GFF477at 515.011 kb on - strand, within GFF477at 515.011 kb on - strand, within GFF477at 515.011 kb on - strand, within GFF477at 515.011 kb on - strand, within GFF477at 515.011 kb on - strand, within GFF477at 515.011 kb on - strand, within GFF477at 515.011 kb on - strand, within GFF477at 515.011 kb on - strand, within GFF477at 515.011 kb on - strand, within GFF477at 515.011 kb on - strand, within GFF477at 515.011 kb on - strand, within GFF477at 515.011 kb on - strand, within GFF477at 515.011 kb on - strand, within GFF477at 515.011 kb on - strand, within GFF477at 515.011 kb on - strand, within GFF477at 515.011 kb on - strand, within GFF477at 515.011 kb on - strand, within GFF477at 515.011 kb on - strand, within GFF477at 515.011 kb on - strand, within GFF477at 515.019 kb on + strand, within GFF477at 515.019 kb on + strand, within GFF477at 515.019 kb on + strand, within GFF477at 515.019 kb on + strand, within GFF477at 515.019 kb on + strand, within GFF477at 515.019 kb on + strand, within GFF477at 515.019 kb on + strand, within GFF477at 515.019 kb on + strand, within GFF477at 515.019 kb on + strand, within GFF477at 515.019 kb on + strand, within GFF477at 515.020 kb on - strand, within GFF477at 515.020 kb on - strand, within GFF477at 515.020 kb on - strand, within GFF477at 515.020 kb on - strand, within GFF477at 515.020 kb on - strand, within GFF477at 515.020 kb on - strand, within GFF477at 515.020 kb on - strand, within GFF477at 515.020 kb on - strand, within GFF477at 515.020 kb on - strand, within GFF477at 515.020 kb on - strand, within GFF477at 515.020 kb on - strand, within GFF477at 515.020 kb on - strand, within GFF477at 515.020 kb on - strand, within GFF477at 515.020 kb on - strand, within GFF477at 515.020 kb on - strand, within GFF477at 515.020 kb on - strand, within GFF477at 515.020 kb on - strand, within GFF477at 515.097 kb on + strand, within GFF477at 515.097 kb on + strand, within GFF477at 515.097 kb on + strand, within GFF477at 515.097 kb on + strand, within GFF477at 515.097 kb on + strand, within GFF477at 515.097 kb on + strand, within GFF477at 515.097 kb on + strand, within GFF477at 515.097 kb on + strand, within GFF477at 515.097 kb on + strand, within GFF477at 515.098 kb on - strand, within GFF477at 515.098 kb on - strand, within GFF477at 515.098 kb on - strand, within GFF477at 515.098 kb on - strand, within GFF477at 515.098 kb on - strand, within GFF477at 515.098 kb on - strand, within GFF477at 515.098 kb on - strand, within GFF477at 515.139 kb on + strand, within GFF477at 515.139 kb on + strand, within GFF477at 515.139 kb on + strand, within GFF477at 515.139 kb on + strand, within GFF477at 515.139 kb on + strand, within GFF477at 515.139 kb on + strand, within GFF477at 515.139 kb on + strand, within GFF477at 515.140 kb on - strand, within GFF477at 515.140 kb on - strand, within GFF477at 515.140 kb on - strand, within GFF477at 515.140 kb on - strand, within GFF477at 515.140 kb on - strand, within GFF477at 515.140 kb on - strand, within GFF477at 515.140 kb on - strand, within GFF477at 515.244 kb on + strand, within GFF477at 515.244 kb on + strand, within GFF477at 515.244 kb on + strand, within GFF477at 515.244 kb on + strand, within GFF477at 515.244 kb on + strand, within GFF477at 515.244 kb on + strand, within GFF477at 515.244 kb on + strand, within GFF477at 515.244 kb on + strand, within GFF477at 515.245 kb on - strand, within GFF477at 515.245 kb on - strand, within GFF477at 515.313 kb on + strand, within GFF477at 515.313 kb on + strand, within GFF477at 515.313 kb on + strand, within GFF477at 515.313 kb on + strand, within GFF477at 515.472 kb on + strand, within GFF477at 515.472 kb on + strand, within GFF477at 515.472 kb on + strand, within GFF477at 515.484 kb on + strand, within GFF477at 515.484 kb on + strand, within GFF477at 515.484 kb on + strand, within GFF477at 515.484 kb on + strand, within GFF477at 515.484 kb on + strand, within GFF477at 515.484 kb on + strand, within GFF477at 515.484 kb on + strand, within GFF477at 515.485 kb on - strand, within GFF477at 515.485 kb on - strand, within GFF477at 515.485 kb on - strand, within GFF477at 515.485 kb on - strand, within GFF477at 515.485 kb on - strand, within GFF477at 515.485 kb on - strand, within GFF477at 515.485 kb on - strand, within GFF477at 515.485 kb on - strand, within GFF477at 515.485 kb on - strand, within GFF477at 515.485 kb on - strand, within GFF477at 515.485 kb on - strand, within GFF477at 515.718 kb on + strandat 515.718 kb on + strandat 515.718 kb on + strandat 515.719 kb on - strandat 515.719 kb on - strandat 515.887 kb on + strandat 515.887 kb on + strandat 515.887 kb on + strandat 515.887 kb on + strandat 515.888 kb on - strandat 515.888 kb on - strandat 515.888 kb on - strandat 515.888 kb on - strandat 515.888 kb on - strandat 516.433 kb on + strand, within GFF478at 516.435 kb on - strand, within GFF478at 516.473 kb on - strand, within GFF478at 516.526 kb on + strandat 516.526 kb on + strandat 516.526 kb on + strandat 516.526 kb on + strandat 516.527 kb on - strandat 516.716 kb on + strandat 516.716 kb on + strandat 516.716 kb on + strandat 516.716 kb on + strandat 516.716 kb on + strandat 516.717 kb on - strandat 516.717 kb on - strandat 516.717 kb on - strandat 516.717 kb on - strandat 516.731 kb on + strandat 517.373 kb on + strand, within GFF479at 517.373 kb on + strand, within GFF479at 517.374 kb on - strand, within GFF479at 517.374 kb on - strand, within GFF479

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL
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514,945 + -1.0
514,945 + -1.3
515,010 + GFF477 0.11 +0.7
515,010 + GFF477 0.11 -2.9
515,010 + GFF477 0.11 +0.5
515,010 + GFF477 0.11 +0.4
515,010 + GFF477 0.11 -0.5
515,010 + GFF477 0.11 +0.3
515,010 + GFF477 0.11 -0.3
515,010 + GFF477 0.11 -0.4
515,010 + GFF477 0.11 -1.5
515,011 - GFF477 0.12 +0.1
515,011 - GFF477 0.12 +0.9
515,011 - GFF477 0.12 +0.2
515,011 - GFF477 0.12 -0.3
515,011 - GFF477 0.12 -0.5
515,011 - GFF477 0.12 +0.2
515,011 - GFF477 0.12 +0.0
515,011 - GFF477 0.12 -1.0
515,011 - GFF477 0.12 -0.9
515,011 - GFF477 0.12 -1.0
515,011 - GFF477 0.12 +1.1
515,011 - GFF477 0.12 -0.6
515,011 - GFF477 0.12 +0.3
515,011 - GFF477 0.12 -0.5
515,011 - GFF477 0.12 +0.4
515,011 - GFF477 0.12 +0.1
515,011 - GFF477 0.12 -0.1
515,011 - GFF477 0.12 +0.5
515,011 - GFF477 0.12 -0.8
515,011 - GFF477 0.12 -0.4
515,011 - GFF477 0.12 -0.6
515,011 - GFF477 0.12 -1.3
515,011 - GFF477 0.12 +0.7
515,011 - GFF477 0.12 -0.2
515,011 - GFF477 0.12 -0.5
515,019 + GFF477 0.12 -0.1
515,019 + GFF477 0.12 +0.4
515,019 + GFF477 0.12 +0.1
515,019 + GFF477 0.12 +0.1
515,019 + GFF477 0.12 -0.1
515,019 + GFF477 0.12 -1.0
515,019 + GFF477 0.12 +0.5
515,019 + GFF477 0.12 +0.3
515,019 + GFF477 0.12 -1.0
515,019 + GFF477 0.12 -0.6
515,020 - GFF477 0.13 -0.1
515,020 - GFF477 0.13 -1.1
515,020 - GFF477 0.13 +0.3
515,020 - GFF477 0.13 -0.3
515,020 - GFF477 0.13 -1.4
515,020 - GFF477 0.13 -0.3
515,020 - GFF477 0.13 -0.3
515,020 - GFF477 0.13 +0.6
515,020 - GFF477 0.13 +0.1
515,020 - GFF477 0.13 -2.2
515,020 - GFF477 0.13 -1.3
515,020 - GFF477 0.13 +1.5
515,020 - GFF477 0.13 +0.3
515,020 - GFF477 0.13 -0.5
515,020 - GFF477 0.13 -0.6
515,020 - GFF477 0.13 -0.0
515,020 - GFF477 0.13 -0.1
515,097 + GFF477 0.21 -0.7
515,097 + GFF477 0.21 -0.4
515,097 + GFF477 0.21 -1.1
515,097 + GFF477 0.21 -0.3
515,097 + GFF477 0.21 +1.5
515,097 + GFF477 0.21 +0.6
515,097 + GFF477 0.21 +0.5
515,097 + GFF477 0.21 +0.1
515,097 + GFF477 0.21 -2.7
515,098 - GFF477 0.21 -0.7
515,098 - GFF477 0.21 +0.7
515,098 - GFF477 0.21 -0.9
515,098 - GFF477 0.21 -0.8
515,098 - GFF477 0.21 -0.4
515,098 - GFF477 0.21 -0.0
515,098 - GFF477 0.21 +0.1
515,139 + GFF477 0.26 -0.8
515,139 + GFF477 0.26 -0.1
515,139 + GFF477 0.26 -0.4
515,139 + GFF477 0.26 -3.4
515,139 + GFF477 0.26 +0.3
515,139 + GFF477 0.26 +0.1
515,139 + GFF477 0.26 +0.5
515,140 - GFF477 0.26 +0.5
515,140 - GFF477 0.26 +0.4
515,140 - GFF477 0.26 -0.3
515,140 - GFF477 0.26 -0.7
515,140 - GFF477 0.26 +2.5
515,140 - GFF477 0.26 -0.7
515,140 - GFF477 0.26 +0.4
515,244 + GFF477 0.37 +1.0
515,244 + GFF477 0.37 -0.8
515,244 + GFF477 0.37 -0.0
515,244 + GFF477 0.37 -0.1
515,244 + GFF477 0.37 -2.8
515,244 + GFF477 0.37 -1.1
515,244 + GFF477 0.37 +0.4
515,244 + GFF477 0.37 -1.0
515,245 - GFF477 0.38 +1.1
515,245 - GFF477 0.38 -0.9
515,313 + GFF477 0.45 -0.1
515,313 + GFF477 0.45 -0.7
515,313 + GFF477 0.45 -0.7
515,313 + GFF477 0.45 -0.5
515,472 + GFF477 0.63 -0.7
515,472 + GFF477 0.63 +0.9
515,472 + GFF477 0.63 -1.9
515,484 + GFF477 0.64 -0.7
515,484 + GFF477 0.64 +0.2
515,484 + GFF477 0.64 -0.2
515,484 + GFF477 0.64 +1.3
515,484 + GFF477 0.64 +1.3
515,484 + GFF477 0.64 -0.4
515,484 + GFF477 0.64 +0.5
515,485 - GFF477 0.64 +0.0
515,485 - GFF477 0.64 +1.5
515,485 - GFF477 0.64 -0.5
515,485 - GFF477 0.64 -0.1
515,485 - GFF477 0.64 -0.4
515,485 - GFF477 0.64 +0.3
515,485 - GFF477 0.64 -0.3
515,485 - GFF477 0.64 -0.8
515,485 - GFF477 0.64 +0.1
515,485 - GFF477 0.64 +0.1
515,485 - GFF477 0.64 -0.3
515,718 + -0.7
515,718 + +0.2
515,718 + +0.6
515,719 - +0.2
515,719 - +0.4
515,887 + +0.6
515,887 + +0.3
515,887 + -1.1
515,887 + +0.0
515,888 - -0.6
515,888 - +0.7
515,888 - +0.7
515,888 - -0.1
515,888 - -0.7
516,433 + GFF478 0.82 +0.5
516,435 - GFF478 0.82 +0.2
516,473 - GFF478 0.89 +0.3
516,526 + -1.7
516,526 + -0.3
516,526 + +0.3
516,526 + -1.1
516,527 - +0.3
516,716 + +0.1
516,716 + +0.2
516,716 + -1.3
516,716 + -0.5
516,716 + -2.0
516,717 - +1.1
516,717 - -1.6
516,717 - +0.5
516,717 - -1.2
516,731 + -0.6
517,373 + GFF479 0.56 +0.7
517,373 + GFF479 0.56 +0.5
517,374 - GFF479 0.56 +0.4
517,374 - GFF479 0.56 +1.9

Or see this region's nucleotide sequence