Experiment: M9 with calcium pantothenate 10 mg/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4382 and GFF4383 are separated by 112 nucleotides GFF4383 and GFF4384 are separated by 14 nucleotides
GFF4382 - FIG00957806: hypothetical protein, at 12,333 to 13,103
GFF4382
GFF4383 - hypothetical protein, at 13,216 to 13,500
GFF4383
GFF4384 - Plasmid replication initiator protein, at 13,515 to 14,372
GFF4384
Position (kb) 13
14 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 12.233 kb on + strand at 12.233 kb on + strand at 12.233 kb on + strand at 12.234 kb on - strand at 12.234 kb on - strand at 12.240 kb on + strand at 12.240 kb on + strand at 12.240 kb on + strand at 12.241 kb on - strand at 12.276 kb on + strand at 12.276 kb on + strand at 12.276 kb on + strand at 12.276 kb on + strand at 12.276 kb on + strand at 12.276 kb on + strand at 12.276 kb on + strand at 12.277 kb on - strand at 12.361 kb on - strand at 12.375 kb on + strand at 12.375 kb on + strand at 12.375 kb on + strand at 12.375 kb on + strand at 12.375 kb on + strand at 12.375 kb on + strand at 12.375 kb on + strand at 12.375 kb on + strand at 12.376 kb on - strand at 12.376 kb on - strand at 12.376 kb on - strand at 12.376 kb on - strand at 12.376 kb on - strand at 12.376 kb on - strand at 12.376 kb on - strand at 12.376 kb on - strand at 12.376 kb on - strand at 12.381 kb on + strand at 12.381 kb on + strand at 12.381 kb on + strand at 12.381 kb on + strand at 12.381 kb on + strand at 12.381 kb on + strand at 12.381 kb on + strand at 12.382 kb on - strand at 12.382 kb on - strand at 12.382 kb on - strand at 12.382 kb on - strand at 12.382 kb on - strand at 12.382 kb on - strand at 12.382 kb on - strand at 12.382 kb on - strand at 12.382 kb on - strand at 12.420 kb on + strand, within GFF4382 at 12.420 kb on + strand, within GFF4382 at 12.420 kb on + strand, within GFF4382 at 12.420 kb on + strand, within GFF4382 at 12.420 kb on + strand, within GFF4382 at 12.421 kb on - strand, within GFF4382 at 12.421 kb on - strand, within GFF4382 at 12.421 kb on - strand, within GFF4382 at 12.421 kb on - strand, within GFF4382 at 12.421 kb on - strand, within GFF4382 at 12.421 kb on - strand, within GFF4382 at 12.676 kb on + strand, within GFF4382 at 12.676 kb on + strand, within GFF4382 at 12.676 kb on + strand, within GFF4382 at 12.676 kb on + strand, within GFF4382 at 12.676 kb on + strand, within GFF4382 at 12.676 kb on + strand, within GFF4382 at 12.676 kb on + strand, within GFF4382 at 12.676 kb on + strand, within GFF4382 at 12.677 kb on - strand, within GFF4382 at 12.677 kb on - strand, within GFF4382 at 12.677 kb on - strand, within GFF4382 at 12.747 kb on + strand, within GFF4382 at 12.747 kb on + strand, within GFF4382 at 12.747 kb on + strand, within GFF4382 at 12.747 kb on + strand, within GFF4382 at 12.747 kb on + strand, within GFF4382 at 12.747 kb on + strand, within GFF4382 at 12.747 kb on + strand, within GFF4382 at 12.747 kb on + strand, within GFF4382 at 12.748 kb on - strand, within GFF4382 at 12.748 kb on - strand, within GFF4382 at 12.748 kb on - strand, within GFF4382 at 12.748 kb on - strand, within GFF4382 at 12.748 kb on - strand, within GFF4382 at 12.748 kb on - strand, within GFF4382 at 12.748 kb on - strand, within GFF4382 at 12.753 kb on + strand, within GFF4382 at 12.753 kb on + strand, within GFF4382 at 12.753 kb on + strand, within GFF4382 at 12.753 kb on + strand, within GFF4382 at 12.753 kb on + strand, within GFF4382 at 12.753 kb on + strand, within GFF4382 at 12.754 kb on - strand, within GFF4382 at 12.754 kb on - strand, within GFF4382 at 12.754 kb on - strand, within GFF4382 at 12.754 kb on - strand, within GFF4382 at 12.754 kb on - strand, within GFF4382 at 12.789 kb on + strand, within GFF4382 at 12.896 kb on + strand, within GFF4382 at 12.896 kb on + strand, within GFF4382 at 12.896 kb on + strand, within GFF4382 at 12.896 kb on + strand, within GFF4382 at 12.896 kb on + strand, within GFF4382 at 12.896 kb on + strand, within GFF4382 at 12.896 kb on + strand, within GFF4382 at 12.896 kb on + strand, within GFF4382 at 12.896 kb on + strand, within GFF4382 at 12.896 kb on + strand, within GFF4382 at 12.896 kb on + strand, within GFF4382 at 12.896 kb on + strand, within GFF4382 at 12.896 kb on + strand, within GFF4382 at 12.897 kb on - strand, within GFF4382 at 12.897 kb on - strand, within GFF4382 at 12.897 kb on - strand, within GFF4382 at 12.897 kb on - strand, within GFF4382 at 12.897 kb on - strand, within GFF4382 at 12.897 kb on - strand, within GFF4382 at 12.897 kb on - strand, within GFF4382 at 12.897 kb on - strand, within GFF4382 at 13.062 kb on + strand at 13.062 kb on + strand at 13.101 kb on + strand at 13.173 kb on - strand at 13.279 kb on + strand, within GFF4383 at 13.279 kb on + strand, within GFF4383 at 13.279 kb on + strand, within GFF4383 at 13.279 kb on + strand, within GFF4383 at 13.279 kb on + strand, within GFF4383 at 13.280 kb on - strand, within GFF4383 at 13.280 kb on - strand, within GFF4383 at 13.306 kb on + strand, within GFF4383 at 13.306 kb on + strand, within GFF4383 at 13.307 kb on - strand, within GFF4383 at 13.307 kb on - strand, within GFF4383 at 13.307 kb on - strand, within GFF4383 at 13.393 kb on + strand, within GFF4383 at 13.393 kb on + strand, within GFF4383 at 13.393 kb on + strand, within GFF4383 at 13.393 kb on + strand, within GFF4383 at 13.393 kb on + strand, within GFF4383 at 13.393 kb on + strand, within GFF4383 at 13.393 kb on + strand, within GFF4383 at 13.393 kb on + strand, within GFF4383 at 13.393 kb on + strand, within GFF4383 at 13.393 kb on + strand, within GFF4383 at 13.393 kb on + strand, within GFF4383 at 13.393 kb on + strand, within GFF4383 at 13.393 kb on + strand, within GFF4383 at 13.393 kb on + strand, within GFF4383 at 13.393 kb on + strand, within GFF4383 at 13.394 kb on - strand, within GFF4383 at 13.394 kb on - strand, within GFF4383 at 13.394 kb on - strand, within GFF4383 at 13.394 kb on - strand, within GFF4383 at 13.394 kb on - strand, within GFF4383 at 13.394 kb on - strand, within GFF4383 at 13.394 kb on - strand, within GFF4383 at 13.394 kb on - strand, within GFF4383 at 13.394 kb on - strand, within GFF4383 at 13.394 kb on - strand, within GFF4383 at 13.394 kb on - strand, within GFF4383 at 13.394 kb on - strand, within GFF4383 at 13.394 kb on - strand, within GFF4383 at 13.394 kb on - strand, within GFF4383 at 13.394 kb on - strand, within GFF4383 at 13.394 kb on - strand, within GFF4383 at 13.394 kb on - strand, within GFF4383 at 13.394 kb on - strand, within GFF4383 at 13.394 kb on - strand, within GFF4383 at 13.394 kb on - strand, within GFF4383 at 13.394 kb on - strand, within GFF4383 at 13.435 kb on + strand, within GFF4383 at 13.435 kb on + strand, within GFF4383 at 13.435 kb on + strand, within GFF4383 at 13.435 kb on + strand, within GFF4383 at 13.435 kb on + strand, within GFF4383 at 13.436 kb on - strand, within GFF4383 at 13.436 kb on - strand, within GFF4383 at 13.436 kb on - strand, within GFF4383 at 13.436 kb on - strand, within GFF4383 at 13.436 kb on - strand, within GFF4383 at 13.436 kb on - strand, within GFF4383 at 13.436 kb on - strand, within GFF4383 at 13.460 kb on - strand, within GFF4383 at 13.460 kb on - strand, within GFF4383 at 13.460 kb on - strand, within GFF4383 at 13.483 kb on + strand at 13.483 kb on + strand at 13.483 kb on + strand at 13.741 kb on + strand, within GFF4384 at 13.742 kb on - strand, within GFF4384 at 13.822 kb on + strand, within GFF4384 at 13.822 kb on + strand, within GFF4384 at 13.837 kb on - strand, within GFF4384 at 13.881 kb on + strand, within GFF4384 at 13.881 kb on + strand, within GFF4384 at 13.881 kb on + strand, within GFF4384 at 13.882 kb on - strand, within GFF4384 at 13.882 kb on - strand, within GFF4384 at 13.882 kb on - strand, within GFF4384 at 13.882 kb on - strand, within GFF4384 at 14.056 kb on - strand, within GFF4384 at 14.056 kb on - strand, within GFF4384 at 14.056 kb on - strand, within GFF4384 at 14.056 kb on - strand, within GFF4384 at 14.056 kb on - strand, within GFF4384 at 14.056 kb on - strand, within GFF4384 at 14.056 kb on - strand, within GFF4384 at 14.056 kb on - strand, within GFF4384 at 14.056 kb on - strand, within GFF4384 at 14.056 kb on - strand, within GFF4384 at 14.056 kb on - strand, within GFF4384 at 14.056 kb on - strand, within GFF4384 at 14.056 kb on - strand, within GFF4384 at 14.103 kb on + strand, within GFF4384 at 14.103 kb on + strand, within GFF4384 at 14.104 kb on - strand, within GFF4384 at 14.139 kb on + strand, within GFF4384 at 14.139 kb on + strand, within GFF4384 at 14.139 kb on + strand, within GFF4384 at 14.139 kb on + strand, within GFF4384 at 14.139 kb on + strand, within GFF4384 at 14.248 kb on - strand, within GFF4384 at 14.289 kb on + strand at 14.290 kb on - strand at 14.290 kb on - strand at 14.290 kb on - strand at 14.290 kb on - strand at 14.370 kb on + strand at 14.370 kb on + strand at 14.370 kb on + strand at 14.370 kb on + strand at 14.371 kb on - strand at 14.404 kb on - strand at 14.404 kb on - strand at 14.404 kb on - strand at 14.437 kb on - strand at 14.437 kb on - strand at 14.437 kb on - strand at 14.437 kb on - strand at 14.437 kb on - strand at 14.442 kb on + strand at 14.442 kb on + strand at 14.442 kb on + strand at 14.443 kb on - strand at 14.443 kb on - strand at 14.443 kb on - strand at 14.443 kb on - strand at 14.450 kb on + strand at 14.450 kb on + strand at 14.450 kb on + strand at 14.451 kb on - strand at 14.451 kb on - strand at 14.451 kb on - strand at 14.451 kb on - strand at 14.460 kb on - strand at 14.463 kb on - strand at 14.482 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL remove 12,233 + -2.2 12,233 + +0.4 12,233 + -0.9 12,234 - -0.5 12,234 - +0.3 12,240 + +0.5 12,240 + -0.0 12,240 + -0.4 12,241 - +0.6 12,276 + +0.2 12,276 + -2.2 12,276 + -0.3 12,276 + -0.4 12,276 + +0.1 12,276 + +0.5 12,276 + -1.2 12,277 - +1.8 12,361 - -0.7 12,375 + +0.2 12,375 + -0.3 12,375 + +0.9 12,375 + -0.2 12,375 + +0.0 12,375 + -1.1 12,375 + +0.6 12,375 + +0.8 12,376 - -0.1 12,376 - +0.6 12,376 - +0.2 12,376 - -0.8 12,376 - -1.2 12,376 - -0.4 12,376 - -0.2 12,376 - -0.3 12,376 - -1.2 12,381 + -0.2 12,381 + -0.4 12,381 + +0.1 12,381 + +0.4 12,381 + -2.1 12,381 + +0.2 12,381 + -0.6 12,382 - -1.0 12,382 - -0.5 12,382 - +0.4 12,382 - -0.5 12,382 - +0.1 12,382 - +0.1 12,382 - +0.7 12,382 - -1.7 12,382 - -0.6 12,420 + GFF4382 0.11 -1.8 12,420 + GFF4382 0.11 -0.5 12,420 + GFF4382 0.11 -1.9 12,420 + GFF4382 0.11 -0.9 12,420 + GFF4382 0.11 +0.2 12,421 - GFF4382 0.11 -0.2 12,421 - GFF4382 0.11 +0.3 12,421 - GFF4382 0.11 +0.6 12,421 - GFF4382 0.11 -0.3 12,421 - GFF4382 0.11 -0.3 12,421 - GFF4382 0.11 -0.3 12,676 + GFF4382 0.44 -0.9 12,676 + GFF4382 0.44 -0.9 12,676 + GFF4382 0.44 +0.0 12,676 + GFF4382 0.44 -0.3 12,676 + GFF4382 0.44 -0.3 12,676 + GFF4382 0.44 -1.0 12,676 + GFF4382 0.44 -1.0 12,676 + GFF4382 0.44 +0.2 12,677 - GFF4382 0.45 -0.2 12,677 - GFF4382 0.45 -0.5 12,677 - GFF4382 0.45 +0.4 12,747 + GFF4382 0.54 -0.2 12,747 + GFF4382 0.54 +0.6 12,747 + GFF4382 0.54 -0.1 12,747 + GFF4382 0.54 +1.5 12,747 + GFF4382 0.54 +0.4 12,747 + GFF4382 0.54 -0.4 12,747 + GFF4382 0.54 +0.8 12,747 + GFF4382 0.54 +1.0 12,748 - GFF4382 0.54 +1.7 12,748 - GFF4382 0.54 -1.0 12,748 - GFF4382 0.54 +0.2 12,748 - GFF4382 0.54 +1.4 12,748 - GFF4382 0.54 -0.3 12,748 - GFF4382 0.54 -0.3 12,748 - GFF4382 0.54 -0.7 12,753 + GFF4382 0.54 +0.1 12,753 + GFF4382 0.54 +0.2 12,753 + GFF4382 0.54 -0.3 12,753 + GFF4382 0.54 -1.5 12,753 + GFF4382 0.54 -0.6 12,753 + GFF4382 0.54 +0.2 12,754 - GFF4382 0.55 +0.1 12,754 - GFF4382 0.55 -0.4 12,754 - GFF4382 0.55 +0.3 12,754 - GFF4382 0.55 -0.3 12,754 - GFF4382 0.55 +2.5 12,789 + GFF4382 0.59 -0.0 12,896 + GFF4382 0.73 -1.8 12,896 + GFF4382 0.73 +0.9 12,896 + GFF4382 0.73 -0.6 12,896 + GFF4382 0.73 -0.9 12,896 + GFF4382 0.73 +0.6 12,896 + GFF4382 0.73 -0.9 12,896 + GFF4382 0.73 -0.2 12,896 + GFF4382 0.73 -1.3 12,896 + GFF4382 0.73 -0.7 12,896 + GFF4382 0.73 +0.5 12,896 + GFF4382 0.73 +0.7 12,896 + GFF4382 0.73 -0.5 12,896 + GFF4382 0.73 +0.1 12,897 - GFF4382 0.73 +0.1 12,897 - GFF4382 0.73 -0.5 12,897 - GFF4382 0.73 -1.0 12,897 - GFF4382 0.73 +0.4 12,897 - GFF4382 0.73 -0.5 12,897 - GFF4382 0.73 -0.5 12,897 - GFF4382 0.73 -0.3 12,897 - GFF4382 0.73 +0.7 13,062 + +0.4 13,062 + +0.9 13,101 + +0.5 13,173 - -0.5 13,279 + GFF4383 0.22 +0.1 13,279 + GFF4383 0.22 -0.4 13,279 + GFF4383 0.22 +0.2 13,279 + GFF4383 0.22 +0.3 13,279 + GFF4383 0.22 -0.3 13,280 - GFF4383 0.22 +1.2 13,280 - GFF4383 0.22 +0.1 13,306 + GFF4383 0.32 -0.8 13,306 + GFF4383 0.32 -0.3 13,307 - GFF4383 0.32 +1.1 13,307 - GFF4383 0.32 +0.2 13,307 - GFF4383 0.32 +0.4 13,393 + GFF4383 0.62 +0.6 13,393 + GFF4383 0.62 +0.2 13,393 + GFF4383 0.62 -0.2 13,393 + GFF4383 0.62 +0.8 13,393 + GFF4383 0.62 +0.1 13,393 + GFF4383 0.62 +0.1 13,393 + GFF4383 0.62 -1.3 13,393 + GFF4383 0.62 +0.5 13,393 + GFF4383 0.62 -0.1 13,393 + GFF4383 0.62 +0.9 13,393 + GFF4383 0.62 -0.5 13,393 + GFF4383 0.62 -0.7 13,393 + GFF4383 0.62 +0.3 13,393 + GFF4383 0.62 +0.1 13,393 + GFF4383 0.62 -1.7 13,394 - GFF4383 0.62 +0.9 13,394 - GFF4383 0.62 -0.0 13,394 - GFF4383 0.62 -0.7 13,394 - GFF4383 0.62 +1.2 13,394 - GFF4383 0.62 -0.5 13,394 - GFF4383 0.62 -0.5 13,394 - GFF4383 0.62 +0.5 13,394 - GFF4383 0.62 +1.1 13,394 - GFF4383 0.62 -1.2 13,394 - GFF4383 0.62 +1.3 13,394 - GFF4383 0.62 +0.8 13,394 - GFF4383 0.62 -1.4 13,394 - GFF4383 0.62 -0.0 13,394 - GFF4383 0.62 -0.4 13,394 - GFF4383 0.62 +0.2 13,394 - GFF4383 0.62 -0.3 13,394 - GFF4383 0.62 +2.5 13,394 - GFF4383 0.62 -0.8 13,394 - GFF4383 0.62 +0.0 13,394 - GFF4383 0.62 +0.5 13,394 - GFF4383 0.62 +0.1 13,435 + GFF4383 0.77 +0.0 13,435 + GFF4383 0.77 +0.7 13,435 + GFF4383 0.77 -0.5 13,435 + GFF4383 0.77 +0.8 13,435 + GFF4383 0.77 +0.1 13,436 - GFF4383 0.77 +1.2 13,436 - GFF4383 0.77 +0.9 13,436 - GFF4383 0.77 -0.5 13,436 - GFF4383 0.77 +1.0 13,436 - GFF4383 0.77 -0.3 13,436 - GFF4383 0.77 -1.0 13,436 - GFF4383 0.77 +0.5 13,460 - GFF4383 0.86 -0.4 13,460 - GFF4383 0.86 +1.1 13,460 - GFF4383 0.86 +0.3 13,483 + -0.9 13,483 + +1.3 13,483 + -0.2 13,741 + GFF4384 0.26 -0.6 13,742 - GFF4384 0.26 -0.8 13,822 + GFF4384 0.36 -0.1 13,822 + GFF4384 0.36 -0.5 13,837 - GFF4384 0.38 +0.8 13,881 + GFF4384 0.43 +0.2 13,881 + GFF4384 0.43 -0.1 13,881 + GFF4384 0.43 +0.4 13,882 - GFF4384 0.43 -0.0 13,882 - GFF4384 0.43 +0.5 13,882 - GFF4384 0.43 -1.7 13,882 - GFF4384 0.43 +0.1 14,056 - GFF4384 0.63 -1.5 14,056 - GFF4384 0.63 -0.4 14,056 - GFF4384 0.63 -0.3 14,056 - GFF4384 0.63 +0.1 14,056 - GFF4384 0.63 -1.4 14,056 - GFF4384 0.63 +0.0 14,056 - GFF4384 0.63 -0.5 14,056 - GFF4384 0.63 +0.7 14,056 - GFF4384 0.63 -0.0 14,056 - GFF4384 0.63 +0.1 14,056 - GFF4384 0.63 +1.8 14,056 - GFF4384 0.63 +0.1 14,056 - GFF4384 0.63 +0.8 14,103 + GFF4384 0.69 +0.1 14,103 + GFF4384 0.69 -0.2 14,104 - GFF4384 0.69 -0.4 14,139 + GFF4384 0.73 +0.8 14,139 + GFF4384 0.73 +0.8 14,139 + GFF4384 0.73 +0.6 14,139 + GFF4384 0.73 -0.1 14,139 + GFF4384 0.73 +0.6 14,248 - GFF4384 0.85 +0.0 14,289 + +0.4 14,290 - -0.4 14,290 - -0.2 14,290 - +2.0 14,290 - -2.7 14,370 + +0.2 14,370 + -0.7 14,370 + +1.8 14,370 + +1.2 14,371 - -0.1 14,404 - -0.1 14,404 - -3.2 14,404 - +2.2 14,437 - +0.6 14,437 - -0.2 14,437 - +0.8 14,437 - +1.1 14,437 - +0.7 14,442 + +0.5 14,442 + +0.5 14,442 + -0.1 14,443 - -0.4 14,443 - -0.8 14,443 - -0.3 14,443 - +1.4 14,450 + -0.3 14,450 + +0.5 14,450 + +0.7 14,451 - +0.3 14,451 - +0.4 14,451 - +0.3 14,451 - -0.4 14,460 - +0.1 14,463 - +0.1 14,482 - -1.2
Or see this region's nucleotide sequence