Experiment: M9 with calcium pantothenate 10 mg/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4255 and GFF4256 are separated by 112 nucleotides GFF4256 and GFF4257 are separated by 16 nucleotides
GFF4255 - no description, at 170,359 to 171,402
GFF4255
GFF4256 - Vanillate O-demethylase oxygenase subunit (EC 1.14.13.82), at 171,515 to 172,588
GFF4256
GFF4257 - ABC transporter, substrate-binding protein (cluster 4, leucine/isoleucine/valine/benzoate), at 172,605 to 173,741
GFF4257
Position (kb) 171
172
173 Strain fitness (log2 ratio) -2
-1
0
1 at 170.870 kb on + strand, within GFF4255 at 170.870 kb on + strand, within GFF4255 at 170.870 kb on + strand, within GFF4255 at 170.870 kb on + strand, within GFF4255 at 170.871 kb on - strand, within GFF4255 at 170.871 kb on - strand, within GFF4255 at 170.871 kb on - strand, within GFF4255 at 170.882 kb on + strand, within GFF4255 at 170.882 kb on + strand, within GFF4255 at 170.882 kb on + strand, within GFF4255 at 170.882 kb on + strand, within GFF4255 at 170.927 kb on + strand, within GFF4255 at 170.944 kb on + strand, within GFF4255 at 170.945 kb on - strand, within GFF4255 at 171.406 kb on + strand at 171.406 kb on + strand at 171.448 kb on + strand at 171.453 kb on - strand at 171.536 kb on + strand at 171.615 kb on - strand at 171.720 kb on - strand, within GFF4256 at 171.917 kb on + strand, within GFF4256 at 171.917 kb on + strand, within GFF4256 at 171.995 kb on + strand, within GFF4256 at 171.995 kb on + strand, within GFF4256 at 171.995 kb on + strand, within GFF4256 at 171.996 kb on - strand, within GFF4256 at 171.996 kb on - strand, within GFF4256 at 171.996 kb on - strand, within GFF4256 at 172.092 kb on + strand, within GFF4256 at 172.304 kb on + strand, within GFF4256 at 172.304 kb on + strand, within GFF4256 at 172.364 kb on + strand, within GFF4256 at 172.365 kb on - strand, within GFF4256 at 173.310 kb on + strand, within GFF4257 at 173.310 kb on + strand, within GFF4257 at 173.311 kb on - strand, within GFF4257 at 173.319 kb on + strand, within GFF4257 at 173.320 kb on - strand, within GFF4257 at 173.320 kb on - strand, within GFF4257 at 173.453 kb on - strand, within GFF4257 at 173.490 kb on + strand, within GFF4257 at 173.490 kb on + strand, within GFF4257 at 173.491 kb on - strand, within GFF4257
Per-strain Table
Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL remove 170,870 + GFF4255 0.49 +1.2 170,870 + GFF4255 0.49 -0.9 170,870 + GFF4255 0.49 -2.0 170,870 + GFF4255 0.49 -2.0 170,871 - GFF4255 0.49 -0.7 170,871 - GFF4255 0.49 -0.2 170,871 - GFF4255 0.49 -0.1 170,882 + GFF4255 0.50 +1.3 170,882 + GFF4255 0.50 +1.7 170,882 + GFF4255 0.50 -0.5 170,882 + GFF4255 0.50 -0.1 170,927 + GFF4255 0.54 -0.8 170,944 + GFF4255 0.56 -1.8 170,945 - GFF4255 0.56 -0.0 171,406 + -0.9 171,406 + -0.6 171,448 + -0.7 171,453 - -0.2 171,536 + +0.0 171,615 - -0.3 171,720 - GFF4256 0.19 -0.7 171,917 + GFF4256 0.37 -0.0 171,917 + GFF4256 0.37 -0.6 171,995 + GFF4256 0.45 -0.1 171,995 + GFF4256 0.45 +0.4 171,995 + GFF4256 0.45 -0.0 171,996 - GFF4256 0.45 +0.5 171,996 - GFF4256 0.45 -0.1 171,996 - GFF4256 0.45 +0.2 172,092 + GFF4256 0.54 -0.2 172,304 + GFF4256 0.73 -0.5 172,304 + GFF4256 0.73 +1.7 172,364 + GFF4256 0.79 +0.1 172,365 - GFF4256 0.79 -0.0 173,310 + GFF4257 0.62 +0.4 173,310 + GFF4257 0.62 +0.0 173,311 - GFF4257 0.62 -0.5 173,319 + GFF4257 0.63 -0.5 173,320 - GFF4257 0.63 -1.2 173,320 - GFF4257 0.63 -0.7 173,453 - GFF4257 0.75 -0.5 173,490 + GFF4257 0.78 +0.7 173,490 + GFF4257 0.78 -0.2 173,491 - GFF4257 0.78 +0.3
Or see this region's nucleotide sequence