Strain Fitness in Variovorax sp. SCN45 around GFF4172

Experiment: M9 with calcium pantothenate 10 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF4171 and GFF4172 are separated by 131 nucleotidesGFF4172 and GFF4173 are separated by 97 nucleotides GFF4171 - hypothetical protein, at 76,489 to 77,337 GFF4171 GFF4172 - no description, at 77,469 to 78,149 GFF4172 GFF4173 - 5-methyltetrahydropteroyltriglutamate--homocystei ne methyltransferase (EC 2.1.1.14), at 78,247 to 79,272 GFF4173 Position (kb) 77 78 79Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 77.063 kb on + strand, within GFF4171at 77.063 kb on + strand, within GFF4171at 77.063 kb on + strand, within GFF4171at 77.063 kb on + strand, within GFF4171at 77.063 kb on + strand, within GFF4171at 77.064 kb on - strand, within GFF4171at 77.064 kb on - strand, within GFF4171at 77.064 kb on - strand, within GFF4171at 77.064 kb on - strand, within GFF4171at 77.064 kb on - strand, within GFF4171at 77.064 kb on - strand, within GFF4171at 77.069 kb on + strand, within GFF4171at 77.069 kb on + strand, within GFF4171at 77.069 kb on + strand, within GFF4171at 77.069 kb on + strand, within GFF4171at 77.069 kb on + strand, within GFF4171at 77.069 kb on + strand, within GFF4171at 77.070 kb on - strand, within GFF4171at 77.070 kb on - strand, within GFF4171at 77.070 kb on - strand, within GFF4171at 77.070 kb on - strand, within GFF4171at 77.126 kb on - strand, within GFF4171at 77.252 kb on + strand, within GFF4171at 77.252 kb on + strand, within GFF4171at 77.252 kb on + strand, within GFF4171at 77.252 kb on + strand, within GFF4171at 77.252 kb on + strand, within GFF4171at 77.252 kb on + strand, within GFF4171at 77.252 kb on + strand, within GFF4171at 77.252 kb on + strand, within GFF4171at 77.252 kb on + strand, within GFF4171at 77.252 kb on + strand, within GFF4171at 77.252 kb on + strand, within GFF4171at 77.253 kb on - strandat 77.253 kb on - strandat 77.253 kb on - strandat 77.253 kb on - strandat 77.253 kb on - strandat 77.261 kb on + strandat 77.261 kb on + strandat 77.261 kb on + strandat 77.261 kb on + strandat 77.262 kb on - strandat 77.262 kb on - strandat 77.262 kb on - strandat 77.262 kb on - strandat 77.262 kb on - strandat 77.291 kb on + strandat 77.291 kb on + strandat 77.291 kb on + strandat 77.291 kb on + strandat 77.291 kb on + strandat 77.292 kb on - strandat 77.292 kb on - strandat 77.292 kb on - strandat 77.292 kb on - strandat 77.292 kb on - strandat 77.292 kb on - strandat 77.386 kb on + strandat 77.392 kb on + strandat 77.392 kb on + strandat 77.451 kb on + strandat 77.451 kb on + strandat 77.514 kb on - strandat 77.514 kb on - strandat 77.643 kb on + strand, within GFF4172at 77.728 kb on - strand, within GFF4172at 77.728 kb on - strand, within GFF4172at 77.728 kb on - strand, within GFF4172at 77.730 kb on + strand, within GFF4172at 77.730 kb on + strand, within GFF4172at 77.730 kb on + strand, within GFF4172at 77.730 kb on + strand, within GFF4172at 77.730 kb on + strand, within GFF4172at 77.730 kb on + strand, within GFF4172at 77.730 kb on + strand, within GFF4172at 77.730 kb on + strand, within GFF4172at 77.730 kb on + strand, within GFF4172at 77.730 kb on + strand, within GFF4172at 77.730 kb on + strand, within GFF4172at 77.730 kb on + strand, within GFF4172at 77.730 kb on - strand, within GFF4172at 77.731 kb on - strand, within GFF4172at 77.731 kb on - strand, within GFF4172at 77.731 kb on - strand, within GFF4172at 77.731 kb on - strand, within GFF4172at 77.731 kb on - strand, within GFF4172at 77.731 kb on - strand, within GFF4172at 78.125 kb on + strandat 78.128 kb on + strandat 78.192 kb on + strandat 78.192 kb on + strandat 78.193 kb on - strandat 78.193 kb on - strandat 78.376 kb on + strand, within GFF4173at 78.376 kb on + strand, within GFF4173at 78.576 kb on - strand, within GFF4173at 78.576 kb on - strand, within GFF4173at 78.576 kb on - strand, within GFF4173at 78.639 kb on - strand, within GFF4173at 78.725 kb on + strand, within GFF4173at 78.725 kb on + strand, within GFF4173at 78.725 kb on + strand, within GFF4173at 78.726 kb on - strand, within GFF4173at 78.726 kb on - strand, within GFF4173at 78.726 kb on - strand, within GFF4173at 78.842 kb on + strand, within GFF4173at 78.843 kb on - strand, within GFF4173at 78.998 kb on + strand, within GFF4173at 78.998 kb on + strand, within GFF4173

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL
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77,063 + GFF4171 0.68 -0.2
77,063 + GFF4171 0.68 -0.6
77,063 + GFF4171 0.68 +0.2
77,063 + GFF4171 0.68 +0.6
77,063 + GFF4171 0.68 -0.1
77,064 - GFF4171 0.68 -0.4
77,064 - GFF4171 0.68 +0.2
77,064 - GFF4171 0.68 -0.1
77,064 - GFF4171 0.68 -0.1
77,064 - GFF4171 0.68 -1.0
77,064 - GFF4171 0.68 +0.1
77,069 + GFF4171 0.68 +0.3
77,069 + GFF4171 0.68 +2.7
77,069 + GFF4171 0.68 -1.1
77,069 + GFF4171 0.68 -1.8
77,069 + GFF4171 0.68 -1.0
77,069 + GFF4171 0.68 -1.4
77,070 - GFF4171 0.68 -0.5
77,070 - GFF4171 0.68 -0.9
77,070 - GFF4171 0.68 -0.4
77,070 - GFF4171 0.68 +0.7
77,126 - GFF4171 0.75 +0.1
77,252 + GFF4171 0.90 +1.3
77,252 + GFF4171 0.90 +0.1
77,252 + GFF4171 0.90 +0.2
77,252 + GFF4171 0.90 +0.3
77,252 + GFF4171 0.90 +0.1
77,252 + GFF4171 0.90 -0.2
77,252 + GFF4171 0.90 -0.2
77,252 + GFF4171 0.90 +0.3
77,252 + GFF4171 0.90 -0.0
77,252 + GFF4171 0.90 -0.6
77,252 + GFF4171 0.90 +0.4
77,253 - -0.1
77,253 - +0.0
77,253 - -0.2
77,253 - +2.5
77,253 - +1.0
77,261 + +0.3
77,261 + +1.2
77,261 + +0.5
77,261 + -0.2
77,262 - -1.0
77,262 - -0.1
77,262 - -1.2
77,262 - -0.4
77,262 - -0.3
77,291 + -0.3
77,291 + -0.1
77,291 + +0.1
77,291 + -0.2
77,291 + -0.8
77,292 - +0.3
77,292 - -0.5
77,292 - -0.5
77,292 - -1.6
77,292 - -0.9
77,292 - -0.3
77,386 + -0.5
77,392 + -0.7
77,392 + -0.9
77,451 + +0.5
77,451 + +0.7
77,514 - -0.3
77,514 - -0.5
77,643 + GFF4172 0.26 +0.2
77,728 - GFF4172 0.38 -1.4
77,728 - GFF4172 0.38 -1.6
77,728 - GFF4172 0.38 +0.2
77,730 + GFF4172 0.38 +2.2
77,730 + GFF4172 0.38 +0.3
77,730 + GFF4172 0.38 -0.9
77,730 + GFF4172 0.38 -0.5
77,730 + GFF4172 0.38 +0.5
77,730 + GFF4172 0.38 -0.9
77,730 + GFF4172 0.38 +0.4
77,730 + GFF4172 0.38 -0.1
77,730 + GFF4172 0.38 -0.1
77,730 + GFF4172 0.38 -1.6
77,730 + GFF4172 0.38 -0.2
77,730 + GFF4172 0.38 -0.4
77,730 - GFF4172 0.38 -0.2
77,731 - GFF4172 0.38 -0.4
77,731 - GFF4172 0.38 +1.2
77,731 - GFF4172 0.38 +0.1
77,731 - GFF4172 0.38 -0.7
77,731 - GFF4172 0.38 -0.2
77,731 - GFF4172 0.38 -0.9
78,125 + +0.7
78,128 + +0.3
78,192 + -0.9
78,192 + +0.4
78,193 - -1.7
78,193 - -0.6
78,376 + GFF4173 0.13 -0.4
78,376 + GFF4173 0.13 +1.1
78,576 - GFF4173 0.32 +0.7
78,576 - GFF4173 0.32 -0.0
78,576 - GFF4173 0.32 -1.7
78,639 - GFF4173 0.38 -0.2
78,725 + GFF4173 0.47 -0.4
78,725 + GFF4173 0.47 -0.0
78,725 + GFF4173 0.47 +0.9
78,726 - GFF4173 0.47 -2.9
78,726 - GFF4173 0.47 -0.7
78,726 - GFF4173 0.47 -1.5
78,842 + GFF4173 0.58 -0.1
78,843 - GFF4173 0.58 +0.3
78,998 + GFF4173 0.73 -1.2
78,998 + GFF4173 0.73 -1.0

Or see this region's nucleotide sequence