Strain Fitness in Variovorax sp. SCN45 around GFF3767

Experiment: M9 with calcium pantothenate 10 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3765 and GFF3766 overlap by 11 nucleotidesGFF3766 and GFF3767 overlap by 14 nucleotidesGFF3767 and GFF3768 overlap by 4 nucleotides GFF3765 - no description, at 256,750 to 257,751 GFF3765 GFF3766 - hypothetical protein, at 257,741 to 258,472 GFF3766 GFF3767 - 5'-nucleotidase/2',3'-cyclic phosphodiesterase and related esterases, at 258,459 to 259,235 GFF3767 GFF3768 - no description, at 259,232 to 260,482 GFF3768 Position (kb) 258 259 260Strain fitness (log2 ratio) -2 -1 0 1 2at 257.476 kb on + strand, within GFF3765at 257.554 kb on + strand, within GFF3765at 257.555 kb on - strand, within GFF3765at 257.555 kb on - strand, within GFF3765at 257.592 kb on - strand, within GFF3765at 257.638 kb on + strand, within GFF3765at 257.639 kb on - strand, within GFF3765at 257.677 kb on + strandat 257.678 kb on - strandat 257.678 kb on - strandat 257.678 kb on - strandat 257.678 kb on - strandat 257.678 kb on - strandat 257.678 kb on - strandat 257.678 kb on - strandat 257.861 kb on + strand, within GFF3766at 257.861 kb on + strand, within GFF3766at 257.861 kb on + strand, within GFF3766at 257.861 kb on + strand, within GFF3766at 257.861 kb on + strand, within GFF3766at 257.861 kb on + strand, within GFF3766at 257.861 kb on + strand, within GFF3766at 257.862 kb on - strand, within GFF3766at 257.862 kb on - strand, within GFF3766at 257.862 kb on - strand, within GFF3766at 257.862 kb on - strand, within GFF3766at 257.862 kb on - strand, within GFF3766at 257.862 kb on - strand, within GFF3766at 257.862 kb on - strand, within GFF3766at 258.218 kb on + strand, within GFF3766at 258.347 kb on + strand, within GFF3766at 258.348 kb on - strand, within GFF3766at 258.348 kb on - strand, within GFF3766at 258.348 kb on - strand, within GFF3766at 258.348 kb on - strand, within GFF3766at 258.380 kb on + strand, within GFF3766at 258.381 kb on - strand, within GFF3766at 258.381 kb on - strand, within GFF3766at 258.404 kb on + strandat 258.404 kb on + strandat 258.404 kb on + strandat 258.404 kb on + strandat 258.404 kb on + strandat 258.404 kb on + strandat 258.404 kb on + strandat 258.404 kb on + strandat 258.405 kb on - strandat 258.405 kb on - strandat 258.405 kb on - strandat 258.405 kb on - strandat 258.405 kb on - strandat 258.964 kb on - strand, within GFF3767at 259.119 kb on + strand, within GFF3767at 259.119 kb on + strand, within GFF3767at 259.367 kb on + strand, within GFF3768at 259.367 kb on + strand, within GFF3768at 259.367 kb on + strand, within GFF3768at 259.367 kb on + strand, within GFF3768at 259.367 kb on + strand, within GFF3768at 259.367 kb on + strand, within GFF3768at 259.367 kb on + strand, within GFF3768at 259.367 kb on + strand, within GFF3768at 259.367 kb on + strand, within GFF3768at 259.367 kb on + strand, within GFF3768at 259.367 kb on + strand, within GFF3768at 259.367 kb on + strand, within GFF3768at 259.367 kb on + strand, within GFF3768at 259.368 kb on - strand, within GFF3768at 259.368 kb on - strand, within GFF3768at 259.368 kb on - strand, within GFF3768at 259.368 kb on - strand, within GFF3768at 259.368 kb on - strand, within GFF3768at 259.368 kb on - strand, within GFF3768at 259.368 kb on - strand, within GFF3768at 259.368 kb on - strand, within GFF3768at 259.368 kb on - strand, within GFF3768at 259.472 kb on + strand, within GFF3768at 259.473 kb on - strand, within GFF3768at 259.473 kb on - strand, within GFF3768at 259.473 kb on - strand, within GFF3768at 259.550 kb on + strand, within GFF3768at 259.550 kb on + strand, within GFF3768at 259.550 kb on + strand, within GFF3768at 259.550 kb on + strand, within GFF3768at 259.551 kb on - strand, within GFF3768at 259.765 kb on + strand, within GFF3768at 259.765 kb on + strand, within GFF3768at 259.765 kb on + strand, within GFF3768at 259.765 kb on + strand, within GFF3768at 259.766 kb on - strand, within GFF3768at 259.766 kb on - strand, within GFF3768at 259.766 kb on - strand, within GFF3768at 259.766 kb on - strand, within GFF3768

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL
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257,476 + GFF3765 0.72 +1.4
257,554 + GFF3765 0.80 +0.7
257,555 - GFF3765 0.80 -0.5
257,555 - GFF3765 0.80 -1.1
257,592 - GFF3765 0.84 +1.6
257,638 + GFF3765 0.89 -1.6
257,639 - GFF3765 0.89 +1.9
257,677 + +0.1
257,678 - +0.8
257,678 - +0.2
257,678 - +0.1
257,678 - -0.4
257,678 - -0.2
257,678 - -0.5
257,678 - -0.1
257,861 + GFF3766 0.16 +0.6
257,861 + GFF3766 0.16 -0.4
257,861 + GFF3766 0.16 -0.3
257,861 + GFF3766 0.16 -0.6
257,861 + GFF3766 0.16 -1.1
257,861 + GFF3766 0.16 -0.4
257,861 + GFF3766 0.16 -0.2
257,862 - GFF3766 0.17 -2.6
257,862 - GFF3766 0.17 -0.9
257,862 - GFF3766 0.17 +0.1
257,862 - GFF3766 0.17 -0.3
257,862 - GFF3766 0.17 -0.4
257,862 - GFF3766 0.17 -0.1
257,862 - GFF3766 0.17 +0.3
258,218 + GFF3766 0.65 +0.0
258,347 + GFF3766 0.83 +0.3
258,348 - GFF3766 0.83 -0.4
258,348 - GFF3766 0.83 -0.5
258,348 - GFF3766 0.83 +0.2
258,348 - GFF3766 0.83 -0.6
258,380 + GFF3766 0.87 -0.0
258,381 - GFF3766 0.87 +0.7
258,381 - GFF3766 0.87 -0.2
258,404 + +0.9
258,404 + -0.5
258,404 + -1.1
258,404 + -0.3
258,404 + +1.7
258,404 + -1.1
258,404 + -0.2
258,404 + -0.3
258,405 - -1.0
258,405 - -0.8
258,405 - +0.3
258,405 - -0.7
258,405 - +0.2
258,964 - GFF3767 0.65 -0.7
259,119 + GFF3767 0.85 -0.0
259,119 + GFF3767 0.85 -1.4
259,367 + GFF3768 0.11 -1.1
259,367 + GFF3768 0.11 +0.4
259,367 + GFF3768 0.11 +0.3
259,367 + GFF3768 0.11 -0.4
259,367 + GFF3768 0.11 -0.1
259,367 + GFF3768 0.11 +0.0
259,367 + GFF3768 0.11 +0.3
259,367 + GFF3768 0.11 +2.3
259,367 + GFF3768 0.11 +0.3
259,367 + GFF3768 0.11 +0.6
259,367 + GFF3768 0.11 -1.5
259,367 + GFF3768 0.11 +0.1
259,367 + GFF3768 0.11 +0.2
259,368 - GFF3768 0.11 -0.6
259,368 - GFF3768 0.11 -0.4
259,368 - GFF3768 0.11 +0.5
259,368 - GFF3768 0.11 +1.2
259,368 - GFF3768 0.11 +0.1
259,368 - GFF3768 0.11 -1.1
259,368 - GFF3768 0.11 +0.6
259,368 - GFF3768 0.11 -0.6
259,368 - GFF3768 0.11 +0.1
259,472 + GFF3768 0.19 -0.8
259,473 - GFF3768 0.19 -0.0
259,473 - GFF3768 0.19 -0.0
259,473 - GFF3768 0.19 +0.2
259,550 + GFF3768 0.25 -1.1
259,550 + GFF3768 0.25 +0.8
259,550 + GFF3768 0.25 +0.5
259,550 + GFF3768 0.25 +0.6
259,551 - GFF3768 0.25 -0.8
259,765 + GFF3768 0.43 -0.1
259,765 + GFF3768 0.43 -1.4
259,765 + GFF3768 0.43 +0.2
259,765 + GFF3768 0.43 -0.6
259,766 - GFF3768 0.43 +0.6
259,766 - GFF3768 0.43 +0.4
259,766 - GFF3768 0.43 -0.1
259,766 - GFF3768 0.43 -0.2

Or see this region's nucleotide sequence