Strain Fitness in Variovorax sp. SCN45 around GFF3596

Experiment: M9 with calcium pantothenate 10 mg/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9 with calcium pantothenate 10 mg/mL
107,976	+				+1.6
108,158	+		GFF3595	0.20	-0.3
108,158	+		GFF3595	0.20	-1.0
108,158	+		GFF3595	0.20	-0.4
108,159	-		GFF3595	0.21	-0.3
108,159	-		GFF3595	0.21	+0.5
108,204	+		GFF3595	0.27	-0.3
108,204	+		GFF3595	0.27	+0.3
108,204	+		GFF3595	0.27	-1.1
108,204	+		GFF3595	0.27	-0.9
108,204	+		GFF3595	0.27	-1.9
108,205	-		GFF3595	0.27	-0.8
108,205	-		GFF3595	0.27	+0.3
108,205	-		GFF3595	0.27	-0.3
108,219	-		GFF3595	0.29	-1.6
108,219	-		GFF3595	0.29	-1.3
108,219	-		GFF3595	0.29	+0.3
108,219	-		GFF3595	0.29	-1.6
108,262	+		GFF3595	0.35	-0.1
108,262	+		GFF3595	0.35	-0.4
108,262	+		GFF3595	0.35	-0.7
108,262	+		GFF3595	0.35	+0.0
108,263	-		GFF3595	0.35	-0.3
108,263	-		GFF3595	0.35	-0.1
108,263	-		GFF3595	0.35	+0.3
108,263	-		GFF3595	0.35	-0.4
108,314	+		GFF3595	0.43	-0.4
108,314	+		GFF3595	0.43	-0.2
108,314	+		GFF3595	0.43	-1.2
108,314	+		GFF3595	0.43	-0.3
108,314	+		GFF3595	0.43	+0.8
108,314	+		GFF3595	0.43	-0.5
108,314	+		GFF3595	0.43	+0.5
108,314	+		GFF3595	0.43	-0.7
108,314	+		GFF3595	0.43	-1.4
108,314	+		GFF3595	0.43	+0.0
108,314	+		GFF3595	0.43	-0.3
108,314	+		GFF3595	0.43	-0.0
108,314	+		GFF3595	0.43	+0.3
108,314	+		GFF3595	0.43	+0.1
108,315	-		GFF3595	0.43	-0.3
108,315	-		GFF3595	0.43	+0.4
108,315	-		GFF3595	0.43	-0.7
108,315	-		GFF3595	0.43	-0.1
108,315	-		GFF3595	0.43	-0.5
108,315	-		GFF3595	0.43	+0.6
108,315	-		GFF3595	0.43	+0.9
108,315	-		GFF3595	0.43	+0.6
108,315	-		GFF3595	0.43	+0.3
108,315	-		GFF3595	0.43	-0.9
108,315	-		GFF3595	0.43	-0.6
108,315	-		GFF3595	0.43	-0.2
108,331	-		GFF3595	0.45	+0.6
108,334	+		GFF3595	0.45	+0.1
108,334	+		GFF3595	0.45	-0.1
108,334	+		GFF3595	0.45	-0.4
108,334	+		GFF3595	0.45	+0.2
108,334	+		GFF3595	0.45	-1.7
108,334	+		GFF3595	0.45	+0.4
108,334	+		GFF3595	0.45	+0.1
108,334	+		GFF3595	0.45	-0.5
108,334	+		GFF3595	0.45	-0.3
108,334	+		GFF3595	0.45	-0.1
108,334	+		GFF3595	0.45	-1.6
108,334	+		GFF3595	0.45	-0.0
108,335	-		GFF3595	0.45	-0.1
108,335	-		GFF3595	0.45	+0.0
108,335	-		GFF3595	0.45	-0.3
108,335	-		GFF3595	0.45	-0.3
108,335	-		GFF3595	0.45	-1.6
108,373	+		GFF3595	0.51	-0.8
108,373	+		GFF3595	0.51	+0.6
108,373	+		GFF3595	0.51	-0.6
108,373	+		GFF3595	0.51	+0.4
108,373	+		GFF3595	0.51	-0.9
108,373	+		GFF3595	0.51	+0.5
108,373	+		GFF3595	0.51	-1.2
108,373	+		GFF3595	0.51	-2.2
108,373	+		GFF3595	0.51	-0.2
108,374	-		GFF3595	0.51	-0.3
108,374	-		GFF3595	0.51	+0.9
108,374	-		GFF3595	0.51	-0.0
108,374	-		GFF3595	0.51	+0.4
108,374	-		GFF3595	0.51	+0.9
108,374	-		GFF3595	0.51	-0.6
108,374	-		GFF3595	0.51	-0.4
108,472	+		GFF3595	0.65	+1.0
108,473	-		GFF3595	0.65	+0.2
108,540	-		GFF3595	0.74	+0.8
108,540	-		GFF3595	0.74	-0.5
108,560	-		GFF3595	0.77	-0.1
108,596	+		GFF3595	0.82	+0.1
108,609	-		GFF3595	0.84	-0.5
108,609	-		GFF3595	0.84	+0.2
108,638	-		GFF3595	0.88	+0.3
108,736	+				+0.3
108,736	+				+0.3
108,777	+				+0.9
108,777	+				+0.6
108,778	-				+1.3
108,778	-				-0.9
108,784	+				-0.6
108,784	+				-2.2
108,785	-				-2.2
108,785	-				-0.1
108,820	+				-1.2
108,820	+				+0.7
108,820	+				-0.1
108,821	-				-0.3
108,822	+				-0.1
108,823	-				+0.3
108,823	-				+0.4
108,880	+				-0.1
108,880	+				-0.4
108,880	+				-0.6
108,880	+				-0.7
108,881	-				+0.2
108,881	-				+0.7
108,881	-				-0.4
108,881	-				-0.0
108,881	-				-1.2
108,881	-				-1.5
108,908	-				-0.9
108,934	+				-0.3
108,934	+				-0.0
108,934	+				+0.3
108,934	+				-2.1
108,934	+				-0.4
108,934	+				-0.2
108,935	-				-2.4
108,935	-				+0.0
108,940	+				-0.3
108,940	+				-0.9
108,940	+				-0.8
108,940	+				-0.1
108,940	+				+0.7
108,940	+				+0.6
108,940	+				-0.2
108,941	-				-0.9
108,941	-				-1.1
108,982	+				-0.4
108,982	+				-0.2
108,982	+				+0.1
108,982	+				+0.2
108,982	+				+0.3
108,982	+				-0.5
108,982	+				+0.1
108,982	+				-0.9
108,982	+				-0.2
108,982	+				-0.4
108,982	+				+1.1
108,982	+				-0.2
108,982	+				+1.2
108,982	+				-0.3
108,982	+				+0.4
108,982	+				-1.1
108,982	+				+0.6
108,982	+				-0.5
108,982	+				+2.9
108,982	+				-0.9
108,982	+				-0.7
108,982	+				+0.3
108,982	+				+0.0
108,982	+				+0.5
108,982	+				+0.9
108,982	+				+0.9
108,982	+				-0.4
108,982	+				+0.1
108,982	+				-0.1
108,982	+				-1.5
108,982	+				+0.3
108,982	+				+0.7
108,982	+				-0.2
108,982	+				+0.2
108,983	-				+0.3
108,983	-				-1.3
108,983	-				-0.2
108,983	-				+0.3
108,983	-				-1.3
108,983	-				+0.6
108,983	-				-0.5
108,983	-				-0.7
108,983	-				-0.0
108,983	-				+1.5
108,983	-				+0.3
108,983	-				-1.0
108,983	-				+1.0
108,983	-				-1.9
108,983	-				-0.7
108,983	-				-0.0
108,983	-				-0.5
108,983	-				-1.3
108,983	-				+0.0
108,983	-				+2.5
108,983	-				-0.3
108,983	-				-0.9
108,983	-				-1.1
108,983	-				+1.5
108,983	-				-0.6
108,983	-				-0.9
109,081	+				-0.1
109,081	+				+0.4
109,081	+				-1.3
109,081	+				+0.0
109,081	+				-0.2
109,081	+				-0.2
109,081	+				-1.5
109,081	+				+0.4
109,081	+				-0.1
109,082	-				+1.6
109,082	-				-1.1
109,082	-				+1.2
109,082	-				-0.2
109,082	-				-1.8
109,082	-				-0.8
109,082	-				+1.2
109,082	-				-0.2
109,082	-				+0.3
109,082	-				-1.2
109,082	-				-0.4
109,624	+		GFF3596	0.37	+0.9
109,624	+		GFF3596	0.37	-0.2
109,624	+		GFF3596	0.37	+1.1
109,624	+		GFF3596	0.37	-1.1
109,624	+		GFF3596	0.37	-0.1
109,624	+		GFF3596	0.37	+0.2
109,624	+		GFF3596	0.37	-0.1
109,624	+		GFF3596	0.37	-0.2
109,624	+		GFF3596	0.37	+0.0
109,624	+		GFF3596	0.37	-0.7
109,624	+		GFF3596	0.37	+1.1
109,625	-		GFF3596	0.37	-0.3
109,625	-		GFF3596	0.37	-0.8
109,625	-		GFF3596	0.37	-1.0
109,625	-		GFF3596	0.37	-1.1
109,625	-		GFF3596	0.37	+0.2
109,625	-		GFF3596	0.37	+0.4
109,625	-		GFF3596	0.37	+0.4
109,625	-		GFF3596	0.37	+0.9
109,625	-		GFF3596	0.37	-1.8
109,625	-		GFF3596	0.37	+0.2
109,625	-		GFF3596	0.37	+0.2
109,874	-		GFF3596	0.50	+0.2
109,909	+		GFF3596	0.52	-0.4
109,909	+		GFF3596	0.52	-1.6
109,909	+		GFF3596	0.52	+0.7
109,909	+		GFF3596	0.52	+0.8
109,909	+		GFF3596	0.52	+0.5
109,909	+		GFF3596	0.52	+0.5
109,909	+		GFF3596	0.52	+0.7
109,910	-		GFF3596	0.52	-0.5
109,910	-		GFF3596	0.52	+0.1
109,910	-		GFF3596	0.52	-2.0
109,910	-		GFF3596	0.52	+0.2
109,910	-		GFF3596	0.52	+0.1
110,146	+		GFF3596	0.64	-0.1
110,146	+		GFF3596	0.64	-1.3
110,146	+		GFF3596	0.64	-0.2
110,146	+		GFF3596	0.64	-0.6
110,146	+		GFF3596	0.64	+0.8
110,146	+		GFF3596	0.64	-0.2
110,146	+		GFF3596	0.64	+0.7
110,146	+		GFF3596	0.64	-0.3
110,146	+		GFF3596	0.64	+1.9
110,147	-		GFF3596	0.64	+0.3
110,147	-		GFF3596	0.64	+1.2
110,147	-		GFF3596	0.64	+0.4
110,147	-		GFF3596	0.64	+0.2
110,147	-		GFF3596	0.64	+0.7
110,155	+		GFF3596	0.65	+0.9
110,155	+		GFF3596	0.65	-0.2
110,155	+		GFF3596	0.65	+0.7
110,155	+		GFF3596	0.65	+1.0
110,156	-		GFF3596	0.65	-0.4
110,156	-		GFF3596	0.65	-1.1
110,156	-		GFF3596	0.65	+0.0
110,197	+		GFF3596	0.67	-0.1
110,197	+		GFF3596	0.67	+0.3
110,197	+		GFF3596	0.67	-0.5
110,197	+		GFF3596	0.67	-0.3
110,198	-		GFF3596	0.67	+0.0
110,198	-		GFF3596	0.67	+0.1
110,198	-		GFF3596	0.67	-0.4
110,198	-		GFF3596	0.67	+2.7
110,198	-		GFF3596	0.67	+0.1
110,234	-		GFF3596	0.69	+0.9
110,317	+		GFF3596	0.73	+0.8
110,317	+		GFF3596	0.73	+2.2
110,318	-		GFF3596	0.73	-0.3
110,510	-		GFF3596	0.84	-0.0
110,510	-		GFF3596	0.84	-1.7
110,510	-		GFF3596	0.84	+1.2
110,614	+		GFF3596	0.89	+0.5
111,036	+		GFF3597	0.35	-0.5
111,036	+		GFF3597	0.35	-0.1
111,036	+		GFF3597	0.35	+0.3
111,036	+		GFF3597	0.35	-2.4
111,036	+		GFF3597	0.35	+0.0
111,036	+		GFF3597	0.35	+1.1
111,037	-		GFF3597	0.35	-0.3
111,037	-		GFF3597	0.35	-0.8
111,037	-		GFF3597	0.35	-0.0
111,037	-		GFF3597	0.35	-1.2
111,037	-		GFF3597	0.35	+0.4
111,048	+		GFF3597	0.37	-0.9
111,048	+		GFF3597	0.37	-0.2
111,049	-		GFF3597	0.37	+0.2
111,049	-		GFF3597	0.37	+0.3
111,049	-		GFF3597	0.37	-0.8
111,108	+		GFF3597	0.46	-0.2
111,108	+		GFF3597	0.46	+0.3
111,109	-		GFF3597	0.47	-1.7
111,109	-		GFF3597	0.47	-0.0
111,109	-		GFF3597	0.47	+0.1
111,162	+		GFF3597	0.55	-0.3
111,162	+		GFF3597	0.55	+0.1
111,162	+		GFF3597	0.55	-0.0
111,162	+		GFF3597	0.55	-0.1
111,162	+		GFF3597	0.55	-0.1
111,162	+		GFF3597	0.55	+1.2
111,162	+		GFF3597	0.55	-0.1
111,162	+		GFF3597	0.55	-1.1
111,163	-		GFF3597	0.55	-0.3
111,163	-		GFF3597	0.55	+0.5
111,163	-		GFF3597	0.55	+1.3
111,163	-		GFF3597	0.55	+0.7
111,163	-		GFF3597	0.55	+1.0
111,163	-		GFF3597	0.55	+0.1
111,163	-		GFF3597	0.55	-1.2
111,163	-		GFF3597	0.55	-1.6
111,163	-		GFF3597	0.55	-0.4
111,163	-		GFF3597	0.55	+1.1
111,210	+		GFF3597	0.63	+0.1
111,211	-		GFF3597	0.63	+0.6
111,253	-		GFF3597	0.69	-0.7
111,253	-		GFF3597	0.69	-0.4
111,253	-		GFF3597	0.69	-1.6
111,282	+		GFF3597	0.74	-0.3
111,283	-		GFF3597	0.74	-0.5
111,334	-		GFF3597	0.82	-1.4
111,566	+				-2.3
111,566	+				+0.2
111,566	+				+0.2
111,575	+				-0.4
111,575	+				-1.0
111,575	+				+0.1
111,575	+				+0.3
111,575	+				+0.2
111,575	+				-0.1
111,575	+				-0.4
111,575	+				+0.3
111,575	+				+0.4
111,575	+				+0.6
111,576	-				-0.5
111,576	-				+0.4
111,599	+				+1.6
111,746	+		GFF3598	0.19	-0.8
111,746	+		GFF3598	0.19	-1.6
111,746	+		GFF3598	0.19	-1.1
111,747	-		GFF3598	0.19	-0.8
111,747	-		GFF3598	0.19	-0.1
111,779	+		GFF3598	0.22	+0.9
111,779	+		GFF3598	0.22	-0.3
111,779	+		GFF3598	0.22	-0.9
111,779	+		GFF3598	0.22	-0.5
111,779	+		GFF3598	0.22	+0.8
111,779	+		GFF3598	0.22	+0.5
111,779	+		GFF3598	0.22	-1.1
111,779	+		GFF3598	0.22	-0.5
111,779	+		GFF3598	0.22	-0.3
111,780	-		GFF3598	0.22	-0.0
111,780	-		GFF3598	0.22	-0.5
111,780	-		GFF3598	0.22	-0.1