Strain Fitness in Variovorax sp. SCN45 around GFF2762

Experiment: M9 with calcium pantothenate 10 mg/mL

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGFF2760 and GFF2761 overlap by 4 nucleotidesGFF2761 and GFF2762 are separated by 22 nucleotidesGFF2762 and GFF2763 are separated by 236 nucleotides GFF2760 - Glutamine ABC transporter, ATP-binding protein GlnQ, at 192,072 to 192,800 GFF2760 GFF2761 - Glutamine ABC transporter, permease protein GlnP, at 192,797 to 193,453 GFF2761 GFF2762 - Glutamine ABC transporter, substrate-binding protein GlnH, at 193,476 to 194,225 GFF2762 GFF2763 - 33 kDa chaperonin HslO, at 194,462 to 195,460 GFF2763 Position (kb) 193 194 195Strain fitness (log2 ratio) -2 -1 0 1 2at 192.864 kb on + strand, within GFF2761at 192.864 kb on + strand, within GFF2761at 192.864 kb on + strand, within GFF2761at 192.864 kb on + strand, within GFF2761at 192.864 kb on + strand, within GFF2761at 192.864 kb on + strand, within GFF2761at 192.864 kb on + strand, within GFF2761at 192.864 kb on + strand, within GFF2761at 192.865 kb on - strand, within GFF2761at 192.865 kb on - strand, within GFF2761at 192.865 kb on - strand, within GFF2761at 192.865 kb on - strand, within GFF2761at 192.865 kb on - strand, within GFF2761at 192.865 kb on - strand, within GFF2761at 192.887 kb on + strand, within GFF2761at 192.887 kb on + strand, within GFF2761at 192.887 kb on + strand, within GFF2761at 192.887 kb on + strand, within GFF2761at 192.887 kb on + strand, within GFF2761at 192.887 kb on + strand, within GFF2761at 192.888 kb on - strand, within GFF2761at 192.888 kb on - strand, within GFF2761at 192.888 kb on - strand, within GFF2761at 192.888 kb on - strand, within GFF2761at 193.146 kb on + strand, within GFF2761at 193.146 kb on + strand, within GFF2761at 193.146 kb on + strand, within GFF2761at 193.146 kb on + strand, within GFF2761at 193.146 kb on + strand, within GFF2761at 193.146 kb on + strand, within GFF2761at 193.146 kb on + strand, within GFF2761at 193.146 kb on + strand, within GFF2761at 193.147 kb on - strand, within GFF2761at 193.147 kb on - strand, within GFF2761at 193.147 kb on - strand, within GFF2761at 193.230 kb on + strand, within GFF2761at 193.230 kb on + strand, within GFF2761at 193.230 kb on + strand, within GFF2761at 193.230 kb on + strand, within GFF2761at 193.230 kb on + strand, within GFF2761at 193.231 kb on - strand, within GFF2761at 193.231 kb on - strand, within GFF2761at 193.231 kb on - strand, within GFF2761at 193.231 kb on - strand, within GFF2761at 193.231 kb on - strand, within GFF2761at 193.231 kb on - strand, within GFF2761at 193.231 kb on - strand, within GFF2761at 193.281 kb on + strand, within GFF2761at 193.282 kb on - strand, within GFF2761at 193.282 kb on - strand, within GFF2761at 193.282 kb on - strand, within GFF2761at 193.282 kb on - strand, within GFF2761at 193.282 kb on - strand, within GFF2761at 193.282 kb on - strand, within GFF2761at 193.317 kb on + strand, within GFF2761at 193.318 kb on - strand, within GFF2761at 193.381 kb on + strand, within GFF2761at 193.513 kb on + strandat 193.513 kb on + strandat 193.513 kb on + strandat 193.513 kb on + strandat 193.514 kb on - strandat 193.514 kb on - strandat 193.514 kb on - strandat 193.514 kb on - strandat 193.607 kb on - strand, within GFF2762at 193.669 kb on + strand, within GFF2762at 193.669 kb on + strand, within GFF2762at 193.669 kb on + strand, within GFF2762at 193.669 kb on + strand, within GFF2762at 193.669 kb on + strand, within GFF2762at 193.669 kb on + strand, within GFF2762at 193.669 kb on + strand, within GFF2762at 193.669 kb on + strand, within GFF2762at 193.669 kb on + strand, within GFF2762at 193.669 kb on + strand, within GFF2762at 193.669 kb on + strand, within GFF2762at 193.670 kb on - strand, within GFF2762at 193.670 kb on - strand, within GFF2762at 193.670 kb on - strand, within GFF2762at 193.670 kb on - strand, within GFF2762at 193.670 kb on - strand, within GFF2762at 193.670 kb on - strand, within GFF2762at 193.670 kb on - strand, within GFF2762at 193.670 kb on - strand, within GFF2762at 193.670 kb on - strand, within GFF2762at 193.670 kb on - strand, within GFF2762at 193.670 kb on - strand, within GFF2762at 193.672 kb on + strand, within GFF2762at 193.672 kb on + strand, within GFF2762at 193.672 kb on + strand, within GFF2762at 193.672 kb on + strand, within GFF2762at 193.672 kb on + strand, within GFF2762at 193.672 kb on + strand, within GFF2762at 193.672 kb on + strand, within GFF2762at 193.673 kb on - strand, within GFF2762at 193.673 kb on - strand, within GFF2762at 193.673 kb on - strand, within GFF2762at 193.732 kb on + strand, within GFF2762at 193.733 kb on - strand, within GFF2762at 193.733 kb on - strand, within GFF2762at 193.792 kb on + strand, within GFF2762at 193.900 kb on + strand, within GFF2762at 193.901 kb on - strand, within GFF2762at 193.901 kb on - strand, within GFF2762at 193.903 kb on + strand, within GFF2762at 193.903 kb on + strand, within GFF2762at 193.903 kb on + strand, within GFF2762at 193.904 kb on - strand, within GFF2762at 193.904 kb on - strand, within GFF2762at 194.029 kb on + strand, within GFF2762at 194.029 kb on + strand, within GFF2762at 194.029 kb on + strand, within GFF2762at 194.029 kb on + strand, within GFF2762at 194.029 kb on + strand, within GFF2762at 194.030 kb on - strand, within GFF2762at 194.030 kb on - strand, within GFF2762at 194.030 kb on - strand, within GFF2762at 194.086 kb on + strand, within GFF2762at 194.086 kb on + strand, within GFF2762at 194.086 kb on + strand, within GFF2762at 194.086 kb on + strand, within GFF2762at 194.086 kb on + strand, within GFF2762at 194.086 kb on + strand, within GFF2762at 194.087 kb on - strand, within GFF2762at 194.087 kb on - strand, within GFF2762at 194.087 kb on - strand, within GFF2762at 194.087 kb on - strand, within GFF2762at 194.087 kb on - strand, within GFF2762at 194.087 kb on - strand, within GFF2762at 194.087 kb on - strand, within GFF2762at 194.087 kb on - strand, within GFF2762at 194.087 kb on - strand, within GFF2762at 194.087 kb on - strand, within GFF2762at 194.087 kb on - strand, within GFF2762at 194.087 kb on - strand, within GFF2762at 194.087 kb on - strand, within GFF2762at 194.087 kb on - strand, within GFF2762at 194.087 kb on - strand, within GFF2762at 194.243 kb on - strandat 194.243 kb on - strandat 194.243 kb on - strandat 194.463 kb on + strandat 194.463 kb on + strandat 194.463 kb on + strandat 194.463 kb on + strandat 194.463 kb on + strandat 194.464 kb on - strandat 194.471 kb on + strandat 194.471 kb on + strandat 194.542 kb on - strandat 194.808 kb on + strand, within GFF2763at 194.808 kb on + strand, within GFF2763at 194.808 kb on + strand, within GFF2763at 194.808 kb on + strand, within GFF2763at 194.808 kb on + strand, within GFF2763at 194.808 kb on + strand, within GFF2763at 194.808 kb on + strand, within GFF2763at 194.808 kb on + strand, within GFF2763at 194.808 kb on + strand, within GFF2763at 194.808 kb on + strand, within GFF2763at 194.808 kb on + strand, within GFF2763at 194.808 kb on + strand, within GFF2763at 194.809 kb on - strand, within GFF2763at 194.809 kb on - strand, within GFF2763at 194.809 kb on - strand, within GFF2763at 194.809 kb on - strand, within GFF2763at 194.809 kb on - strand, within GFF2763at 194.809 kb on - strand, within GFF2763at 194.809 kb on - strand, within GFF2763at 194.982 kb on + strand, within GFF2763at 194.982 kb on + strand, within GFF2763at 194.982 kb on + strand, within GFF2763at 194.982 kb on + strand, within GFF2763at 194.982 kb on + strand, within GFF2763at 194.982 kb on + strand, within GFF2763at 194.982 kb on + strand, within GFF2763at 194.982 kb on + strand, within GFF2763at 194.982 kb on + strand, within GFF2763at 194.982 kb on + strand, within GFF2763at 194.982 kb on + strand, within GFF2763at 194.982 kb on + strand, within GFF2763at 194.982 kb on + strand, within GFF2763at 194.982 kb on + strand, within GFF2763at 194.983 kb on - strand, within GFF2763at 194.983 kb on - strand, within GFF2763at 194.983 kb on - strand, within GFF2763at 194.983 kb on - strand, within GFF2763at 194.983 kb on - strand, within GFF2763at 194.983 kb on - strand, within GFF2763at 194.983 kb on - strand, within GFF2763at 194.983 kb on - strand, within GFF2763at 194.983 kb on - strand, within GFF2763at 194.983 kb on - strand, within GFF2763at 194.983 kb on - strand, within GFF2763at 194.983 kb on - strand, within GFF2763at 194.983 kb on - strand, within GFF2763at 194.983 kb on - strand, within GFF2763at 194.983 kb on - strand, within GFF2763at 194.983 kb on - strand, within GFF2763at 194.983 kb on - strand, within GFF2763at 194.983 kb on - strand, within GFF2763at 194.983 kb on - strand, within GFF2763at 195.055 kb on - strand, within GFF2763at 195.055 kb on - strand, within GFF2763

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL
remove
192,864 + GFF2761 0.10 -0.1
192,864 + GFF2761 0.10 -0.0
192,864 + GFF2761 0.10 -0.8
192,864 + GFF2761 0.10 +0.7
192,864 + GFF2761 0.10 -0.7
192,864 + GFF2761 0.10 -0.2
192,864 + GFF2761 0.10 +0.3
192,864 + GFF2761 0.10 -0.3
192,865 - GFF2761 0.10 -1.9
192,865 - GFF2761 0.10 +0.6
192,865 - GFF2761 0.10 -1.5
192,865 - GFF2761 0.10 +2.0
192,865 - GFF2761 0.10 -0.3
192,865 - GFF2761 0.10 +1.6
192,887 + GFF2761 0.14 -0.3
192,887 + GFF2761 0.14 -1.0
192,887 + GFF2761 0.14 -2.4
192,887 + GFF2761 0.14 -2.1
192,887 + GFF2761 0.14 +1.2
192,887 + GFF2761 0.14 +0.5
192,888 - GFF2761 0.14 -0.4
192,888 - GFF2761 0.14 +0.1
192,888 - GFF2761 0.14 +0.3
192,888 - GFF2761 0.14 +0.1
193,146 + GFF2761 0.53 -0.2
193,146 + GFF2761 0.53 +0.7
193,146 + GFF2761 0.53 -1.2
193,146 + GFF2761 0.53 -0.4
193,146 + GFF2761 0.53 -0.2
193,146 + GFF2761 0.53 -0.1
193,146 + GFF2761 0.53 +0.4
193,146 + GFF2761 0.53 +0.9
193,147 - GFF2761 0.53 +1.7
193,147 - GFF2761 0.53 -0.4
193,147 - GFF2761 0.53 -0.2
193,230 + GFF2761 0.66 -0.6
193,230 + GFF2761 0.66 -1.4
193,230 + GFF2761 0.66 -0.4
193,230 + GFF2761 0.66 -0.0
193,230 + GFF2761 0.66 -1.3
193,231 - GFF2761 0.66 -1.1
193,231 - GFF2761 0.66 -0.4
193,231 - GFF2761 0.66 +0.1
193,231 - GFF2761 0.66 -0.2
193,231 - GFF2761 0.66 -0.2
193,231 - GFF2761 0.66 -0.1
193,231 - GFF2761 0.66 -0.6
193,281 + GFF2761 0.74 -0.1
193,282 - GFF2761 0.74 -0.1
193,282 - GFF2761 0.74 -0.3
193,282 - GFF2761 0.74 +0.7
193,282 - GFF2761 0.74 -1.0
193,282 - GFF2761 0.74 +0.6
193,282 - GFF2761 0.74 -0.3
193,317 + GFF2761 0.79 -0.2
193,318 - GFF2761 0.79 -1.9
193,381 + GFF2761 0.89 -1.0
193,513 + -0.0
193,513 + +2.2
193,513 + +0.0
193,513 + +1.6
193,514 - +0.1
193,514 - +2.3
193,514 - +0.5
193,514 - -0.3
193,607 - GFF2762 0.17 -0.3
193,669 + GFF2762 0.26 -0.4
193,669 + GFF2762 0.26 -1.0
193,669 + GFF2762 0.26 +0.5
193,669 + GFF2762 0.26 +0.3
193,669 + GFF2762 0.26 -0.0
193,669 + GFF2762 0.26 -1.2
193,669 + GFF2762 0.26 +0.2
193,669 + GFF2762 0.26 -0.4
193,669 + GFF2762 0.26 +0.4
193,669 + GFF2762 0.26 +0.6
193,669 + GFF2762 0.26 +0.6
193,670 - GFF2762 0.26 +0.0
193,670 - GFF2762 0.26 -1.0
193,670 - GFF2762 0.26 -0.7
193,670 - GFF2762 0.26 -2.3
193,670 - GFF2762 0.26 +0.5
193,670 - GFF2762 0.26 -0.5
193,670 - GFF2762 0.26 +0.3
193,670 - GFF2762 0.26 -0.7
193,670 - GFF2762 0.26 +1.2
193,670 - GFF2762 0.26 -0.5
193,670 - GFF2762 0.26 -0.4
193,672 + GFF2762 0.26 -0.4
193,672 + GFF2762 0.26 -0.6
193,672 + GFF2762 0.26 +0.1
193,672 + GFF2762 0.26 -0.7
193,672 + GFF2762 0.26 -0.3
193,672 + GFF2762 0.26 -0.6
193,672 + GFF2762 0.26 -0.5
193,673 - GFF2762 0.26 +0.0
193,673 - GFF2762 0.26 -0.5
193,673 - GFF2762 0.26 -0.1
193,732 + GFF2762 0.34 +0.2
193,733 - GFF2762 0.34 -0.5
193,733 - GFF2762 0.34 +1.1
193,792 + GFF2762 0.42 +0.2
193,900 + GFF2762 0.57 -1.7
193,901 - GFF2762 0.57 -0.0
193,901 - GFF2762 0.57 -1.7
193,903 + GFF2762 0.57 -0.9
193,903 + GFF2762 0.57 +0.6
193,903 + GFF2762 0.57 -2.7
193,904 - GFF2762 0.57 +0.1
193,904 - GFF2762 0.57 -0.0
194,029 + GFF2762 0.74 -0.7
194,029 + GFF2762 0.74 -0.5
194,029 + GFF2762 0.74 +0.7
194,029 + GFF2762 0.74 -0.6
194,029 + GFF2762 0.74 -0.2
194,030 - GFF2762 0.74 +2.0
194,030 - GFF2762 0.74 -1.0
194,030 - GFF2762 0.74 -0.5
194,086 + GFF2762 0.81 -0.0
194,086 + GFF2762 0.81 -0.9
194,086 + GFF2762 0.81 -0.3
194,086 + GFF2762 0.81 -1.2
194,086 + GFF2762 0.81 +0.2
194,086 + GFF2762 0.81 -0.4
194,087 - GFF2762 0.81 -0.5
194,087 - GFF2762 0.81 +1.0
194,087 - GFF2762 0.81 -0.0
194,087 - GFF2762 0.81 +0.5
194,087 - GFF2762 0.81 +0.3
194,087 - GFF2762 0.81 +0.6
194,087 - GFF2762 0.81 -0.2
194,087 - GFF2762 0.81 -0.4
194,087 - GFF2762 0.81 -1.6
194,087 - GFF2762 0.81 +0.8
194,087 - GFF2762 0.81 -0.2
194,087 - GFF2762 0.81 -0.0
194,087 - GFF2762 0.81 +0.0
194,087 - GFF2762 0.81 -0.0
194,087 - GFF2762 0.81 -0.4
194,243 - -0.5
194,243 - -0.8
194,243 - -0.4
194,463 + +0.1
194,463 + -2.3
194,463 + -0.5
194,463 + -2.5
194,463 + +0.6
194,464 - +0.9
194,471 + -2.0
194,471 + +0.2
194,542 - -1.2
194,808 + GFF2763 0.35 +0.1
194,808 + GFF2763 0.35 +0.2
194,808 + GFF2763 0.35 +0.1
194,808 + GFF2763 0.35 -0.3
194,808 + GFF2763 0.35 -0.0
194,808 + GFF2763 0.35 +0.5
194,808 + GFF2763 0.35 -0.2
194,808 + GFF2763 0.35 -1.4
194,808 + GFF2763 0.35 +0.4
194,808 + GFF2763 0.35 +0.2
194,808 + GFF2763 0.35 -1.1
194,808 + GFF2763 0.35 -0.0
194,809 - GFF2763 0.35 -0.6
194,809 - GFF2763 0.35 -1.1
194,809 - GFF2763 0.35 -0.3
194,809 - GFF2763 0.35 -0.2
194,809 - GFF2763 0.35 -0.5
194,809 - GFF2763 0.35 -0.7
194,809 - GFF2763 0.35 -0.1
194,982 + GFF2763 0.52 -1.6
194,982 + GFF2763 0.52 -0.4
194,982 + GFF2763 0.52 +0.8
194,982 + GFF2763 0.52 +0.6
194,982 + GFF2763 0.52 -0.6
194,982 + GFF2763 0.52 +0.7
194,982 + GFF2763 0.52 -0.7
194,982 + GFF2763 0.52 -0.4
194,982 + GFF2763 0.52 +0.6
194,982 + GFF2763 0.52 +0.3
194,982 + GFF2763 0.52 +0.2
194,982 + GFF2763 0.52 -0.7
194,982 + GFF2763 0.52 +0.4
194,982 + GFF2763 0.52 -1.6
194,983 - GFF2763 0.52 -0.0
194,983 - GFF2763 0.52 +0.6
194,983 - GFF2763 0.52 -1.6
194,983 - GFF2763 0.52 -0.5
194,983 - GFF2763 0.52 -0.9
194,983 - GFF2763 0.52 +0.3
194,983 - GFF2763 0.52 -1.6
194,983 - GFF2763 0.52 +0.4
194,983 - GFF2763 0.52 +0.3
194,983 - GFF2763 0.52 -0.6
194,983 - GFF2763 0.52 +2.0
194,983 - GFF2763 0.52 -0.2
194,983 - GFF2763 0.52 +0.4
194,983 - GFF2763 0.52 -0.3
194,983 - GFF2763 0.52 +0.3
194,983 - GFF2763 0.52 +1.6
194,983 - GFF2763 0.52 +0.1
194,983 - GFF2763 0.52 -0.3
194,983 - GFF2763 0.52 -0.2
195,055 - GFF2763 0.59 -1.1
195,055 - GFF2763 0.59 -0.9

Or see this region's nucleotide sequence